Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016402.1 Corchorus olitorius cultivar O-4 contig16435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47567

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
821--846
1
26.0
1
100
0
52
0
0
0
100
0.00
8367--8412
19
2.6
18
86
10
67
26
19
10
43
1.84
8377--8416
19
2.1
19
100
0
80
25
22
10
42
1.84
13454--13550
31
3.3
29
67
18
83
39
16
16
27
1.90
13482--13581
28
3.5
28
68
12
76
35
18
18
29
1.94
13510--13609
31
3.3
30
68
13
80
37
18
18
27
1.93
13454--13609
59
2.7
59
90
1
242
36
17
17
28
1.93
42328--42353
8
3.2
8
100
0
52
26
23
0
50
1.50
43491--44267
319
2.4
319
81
6
870
34
15
15
33
1.90
45224--46034
323
2.5
326
83
6
916
34
15
15
34
1.89
42915--47565
888
5.3
884
91
2
7205
33
14
15
35
1.89

Tables:   1

The End!