Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016403.1 Corchorus olitorius cultivar O-4 contig16436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 146608
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:729 original size:326 final size:324
Alignment explanation
Indices: 128--929 Score: 934
Period size: 325 Copynumber: 2.4 Consensus size: 324
118 ACGTAAATAA
* * ** * * * * *
128 TCCTTGAAATATATATATAAATCAAACAAAATCCCAGCCACGTTCGATTTAAGTATTTGTTTTTA
1 TCCTTTAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGATTTAAGGATTTGTTTTTA
* * * * * * * *
193 CGAGTATCTTAATCTTTTTTCAATTTTATTAAAAATTAATTCCGAAAATAAATGGAAAAACGATA
66 CGAGCATCTGAATATTGTTTCAATTTAATTAAAAATTAATTCGGAAAAAAAATGGAAAAATGATA
* * * *
258 TTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATTTATTTTTTCTGAGTATTGTG
131 TTAAAAGCGTGAAAAGACCATCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTG
* * *
323 GCAAAAAATTGAGAAAAAAAAACTTTTCCGATCAGTTTTTAGCCGAAATCTTGTACTAACCATCA
196 GCAAAAAATTCAGAAAAAAAAA--TTTCCGATCAGATTTTAGCCGAAATCGTGTACTAACCATCA
* * * * *
388 CGGTTTTTCCTAAAAACGCG-TTCACGAGCTCCGACTCAATTTTGCATGATTTTTGGCACAGAGA
259 CGATTTTTACTAAAAACGCGTTTCACGAGCCCCGACTCAATTTTGCATAATTTTTGGCACAAAGA
452 C
324 C
* * * *
453 TCCTTTAAATATCTATATTCATCAAACCAAATGTCAGCCACATTGGATATAAGGAATTGTTTTTA
1 TCCTTTAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGATTTAAGGATTTGTTTTTA
* *
518 CGAGCATCTGAATATTGTTTAAATTTAATTACAAATTAATTCGGAAAAAAAATTGGAAAAATGAT
66 CGAGCATCTGAATATTGTTTCAATTTAATTAAAAATTAATTCGGAAAAAAAA-TGGAAAAATGAT
**
583 ATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGT
130 ATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGT
* *
648 GGCAAAAAATTCTG-AAAAAAAA-TTCCGGGTCAGATTTTAGCCGAAAATCGTGTACTAACCATC
195 GGCAAAAAATTCAGAAAAAAAAATTTCC-GATCAGATTTTAGCCG-AAATCGTGTACTAACCATC
* * * * * * *
711 ATGATTTTTGGACTAAAAACGCGTTTCAGGGGCCCCGGCTCAGTTTTGTATAATTTTTGGCAGAA
258 ACGATTTTT--ACTAAAAACGCGTTTCACGAGCCCCGACTCAATTTTGCATAATTTTTGGCACAA
776 AGAC
321 AGAC
* *
780 TCCTTGT-AATATCTAGATTCATCTAACCAATCTCAGGCTCTCAGCCACATTAGATTTAAGGATT
1 TCCTT-TAAATATCTATATTCATCAAACCAA----A---TCTCAGCCACATTAGATTTAAGGATT
* * *
844 TG-TTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAA-TAGATTCGG-AAAAAAATAGA
58 TGTTTTTACGAGCATCTGAATATTGTTTCAATTTAATTAAAAATTA-ATTCGGAAAAAAAATGGA
* *
906 AAAATGATATTTAAAGCGAGAAAA
122 AAAATGATATTAAAAGCGTGAAAA
930 TATTTCAATT
Statistics
Matches: 405, Mismatches: 57, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
322 4 0.01
323 14 0.03
324 25 0.06
325 104 0.26
326 93 0.23
327 62 0.15
328 1 0.00
331 26 0.06
332 9 0.02
333 43 0.11
334 24 0.06
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Consensus pattern (324 bp):
TCCTTTAAATATCTATATTCATCAAACCAAATCTCAGCCACATTAGATTTAAGGATTTGTTTTTA
CGAGCATCTGAATATTGTTTCAATTTAATTAAAAATTAATTCGGAAAAAAAATGGAAAAATGATA
TTAAAAGCGTGAAAAGACCATCAATCTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTG
GCAAAAAATTCAGAAAAAAAAATTTCCGATCAGATTTTAGCCGAAATCGTGTACTAACCATCACG
ATTTTTACTAAAAACGCGTTTCACGAGCCCCGACTCAATTTTGCATAATTTTTGGCACAAAGAC
Found at i:1484 original size:316 final size:317
Alignment explanation
Indices: 988--2187 Score: 1300
Period size: 316 Copynumber: 3.7 Consensus size: 317
978 ATTTTTTTGT
* * * *
988 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATC-AAACAAAATC-CAGC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAATC-AAATCTCAGC
* * * * * * * * *
1051 CACGTTCGAGT-TCAGTATTTGTTTTTACGAGCATCTTAATCTTTTTTCAATTTTATTAAAAATT
65 CACATTGGA-TATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
* * *
1115 AATTCGGAAAATAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGTT
129 AATTC--AGAA-AAATAGAAAAACAATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGTT
1180 GAATTATATATTTTTTTCTGAGTATTGTGGCAAAAAAATTGAGAAAAACTTCTCCGATCAGTTTT
191 GAATTATATA-TTTTTTCTGAGTATTGTGGC-AAAAAATTGAGAAAAACTT-T-CGATCAGTTTT
*
1245 TAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCA
252 TAGCCGAAATAGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCA
1310 A
317 A
* *
1311 TTTTGCATGATTTTTGGCGCAAA-ACTCCTTGAAATATCTATTTTCATCGAGTCAAATCTCAGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAATCAAATCTCAGCC
* * * *
1375 ATATTGGATATAAGGATTTGTATTTT-CGAGCATCTCAATCTTGTTTCGATTTAATTGGAAACTA
66 ACATTGGATATAAGGATTTGT-TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
* *
1439 ATTC-G-GAAA-A-AAAAACAATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGTTGATT
130 ATTCAGAAAAATAGAAAAACAATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGTTGAAT
* * * *
1500 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGATAAAAATTTTTGGGTCGGTTTTTAGCC
195 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG--AAAAA-CTTTCGATCAGTTTTTAGCC
* * * * **
1565 AAAATTGTGTACTAACCATCACGGTTATTGGCTAAAAACGCGTTTCGGAGCCCCGATTCAA
257 GAAATAGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAA
* * ** * *
1626 TTTTGCATTATTTTTGGCGCAAAGACTCATTGATTTATCTATATTCATCGAACCAAATGTCAGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAATCAAATCTCAGCC
* *
1691 ACATTGGATATGAGGATTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAA
66 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
* * *
1756 TTCAGAAAAAAAAAATGAAAAAACAATATTAGAAGCGTGAAAAACCCGTTAATCTTTTTGG-GTT
131 TTCAG---AAAAATA-G-AAAAACAATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCG-T
* * *
1820 TGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAACTTTCGAGTTAGTTTTCA
190 TGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAACTTTCGA-TCAGTTTTTA
** * *** * * * *
1885 GCCGAAA-AG-G-AAAAACCCTTCAATCTTTTTGACTAAAAACGTC-TTCCGGGGTCACGGCTCA
254 GCCGAAATAGTGTACTAA-CCATCACGGTTTTTGGCTAAAAACG-CGTTCCGGAGCCCCGGCTCA
*
1946 GT
317 -A
* ** ** * * *
1948 TTTTGCATGGTTTTTGGTTCTGAGACTCGTTGAAATATCTTTATT-AGTCTAATCAAATCT-AGG
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCA-TCGAATCAAATCTCA-G
* * *
2011 CCACATTGGATTTAAGGATTTGTTTTTACGTGCATCAGAATCTTGTTTCGATTTAATTAGAAATT
64 CCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
* * *
2076 AATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCC-TCTAATCTTTTTGGCGTT
129 AATTCAG-AAAAATA-GAAAAACAATATTAGAAGCGTGAAAAGCCCGTC-AATCTTTTTGGCGTT
* * * * *
2140 GAATTATATATATTTTTATGAGTGTTTTTGCCAAAAATTGAGGAAAAA
191 GAATTATATAT-TTTTTCTGAGTATTGTGGCAAAAAATTGA-GAAAAA
2188 TCATTTTGGT
Statistics
Matches: 744, Mismatches: 104, Indels: 60
0.82 0.11 0.07
Matches are distributed among these distances:
314 11 0.01
315 114 0.15
316 152 0.20
317 3 0.00
318 4 0.01
319 49 0.07
320 37 0.05
321 42 0.06
322 150 0.20
323 94 0.13
324 5 0.01
325 83 0.11
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (317 bp):
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAATCAAATCTCAGCC
ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
TTCAGAAAAATAGAAAAACAATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCGTTGAATT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAACTTTCGATCAGTTTTTAGCCGAAA
TAGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAA
Found at i:14653 original size:65 final size:66
Alignment explanation
Indices: 14549--14683 Score: 218
Period size: 65 Copynumber: 2.1 Consensus size: 66
14539 CCAAACGTCT
* * *
14549 CTTAAGACTCCATTTTAAAAGTTTTCGTACTCATTTGAGCCTCTTAAATGCTATGC-TTTGAACA
1 CTTAAGACTCCAATTTAAAAGTCTTCGTACTCATTTGAGCCTCTTAAATGCTATGCTTTTAAACA
14613 G
66 G
* *
14614 CTTAAGGCTCCAATTTAACAGTCTTCGTACTCATTTGAGCCTCTTAAATGCTATGCTTTTAAACA
1 CTTAAGACTCCAATTTAAAAGTCTTCGTACTCATTTGAGCCTCTTAAATGCTATGCTTTTAAACA
14679 G
66 G
14680 CTTA
1 CTTA
14684 CCAAAAGGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
65 52 0.81
66 12 0.19
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.38
Consensus pattern (66 bp):
CTTAAGACTCCAATTTAAAAGTCTTCGTACTCATTTGAGCCTCTTAAATGCTATGCTTTTAAACA
G
Found at i:15436 original size:63 final size:61
Alignment explanation
Indices: 15335--15471 Score: 172
Period size: 63 Copynumber: 2.2 Consensus size: 61
15325 AAAGCTAATT
* * *
15335 GCTCAAATAAGGGCATAACGTCTGTCAAAATGTTCAAATAAGGATCTGATCTTTTAATTTG
1 GCTCAAATAAGGGCATAACGTCTATCAAAATGTTCAAATAAGGACCCGATCTTTTAATTTG
* *
15396 GACGTCAAATAAGGGTC-TAACGT-TATCGAAAATTTTCAAATAAGGGCCCGATCTTTTAATTTG
1 G-C-TCAAATAAGGG-CATAACGTCTATC-AAAATGTTCAAATAAGGACCCGATCTTTTAATTTG
15459 GC-CAAATAAGGGC
1 GCTCAAATAAGGGC
15472 CCGATCTTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
59 1 0.01
60 10 0.15
61 1 0.01
62 5 0.07
63 49 0.73
64 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (61 bp):
GCTCAAATAAGGGCATAACGTCTATCAAAATGTTCAAATAAGGACCCGATCTTTTAATTTG
Found at i:15471 original size:29 final size:29
Alignment explanation
Indices: 15432--15501 Score: 140
Period size: 29 Copynumber: 2.4 Consensus size: 29
15422 CGAAAATTTT
15432 CAAATAAGGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCCGATCTTTTAATTTGGC
15461 CAAATAAGGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCCGATCTTTTAATTTGGC
15490 CAAATAAGGGCC
1 CAAATAAGGGCC
15502 TAACGTTATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (29 bp):
CAAATAAGGGCCCGATCTTTTAATTTGGC
Found at i:15683 original size:61 final size:60
Alignment explanation
Indices: 15577--15734 Score: 212
Period size: 61 Copynumber: 2.6 Consensus size: 60
15567 TGCCAGATCC
* * *
15577 TTATTTGAGCATTTTCG-ATACGTTAAGCCCTTATTTAGCCAAATTAAAAGATCAGGCCA
1 TTATTTGAGCATTTTGGAAAACGTTAGGCCCTTATTTAGCCAAATTAAAAGATCAGGCCA
* * * * *
15636 TTATTTGAGCATTTTGGCAAATGTTTAGGCTCTTATTT-GACCAAATTAAAAGATCATGCCC
1 TTATTTGAGCATTTTGGAAAACG-TTAGGCCCTTATTTAG-CCAAATTAAAAGATCAGGCCA
15697 TTATTTGAGCATTTTGGAAAACGTTAGGCCCTTATTTA
1 TTATTTGAGCATTTTGGAAAACGTTAGGCCCTTATTTA
15735 AGCAATTAGC
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
59 16 0.19
60 17 0.20
61 52 0.61
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (60 bp):
TTATTTGAGCATTTTGGAAAACGTTAGGCCCTTATTTAGCCAAATTAAAAGATCAGGCCA
Found at i:31368 original size:3 final size:3
Alignment explanation
Indices: 31360--31387 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
31350 ATGTTTCCAA
31360 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
31388 TATTATATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32690 original size:20 final size:20
Alignment explanation
Indices: 32665--32704 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32655 TTTCGGTTAC
32665 CTGTAACTTATAGTAATAAA
1 CTGTAACTTATAGTAATAAA
32685 CTGTAACTTATAGTAATAAA
1 CTGTAACTTATAGTAATAAA
32705 GAAACATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
CTGTAACTTATAGTAATAAA
Found at i:39684 original size:38 final size:38
Alignment explanation
Indices: 39633--39716 Score: 168
Period size: 38 Copynumber: 2.2 Consensus size: 38
39623 GCACTCCTTG
39633 CTGCACAAGGAGGCAAAAAAGAGGCTCACACACATAAT
1 CTGCACAAGGAGGCAAAAAAGAGGCTCACACACATAAT
39671 CTGCACAAGGAGGCAAAAAAGAGGCTCACACACATAAT
1 CTGCACAAGGAGGCAAAAAAGAGGCTCACACACATAAT
39709 CTGCACAA
1 CTGCACAA
39717 AACTAAAACC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.44, C:0.25, G:0.20, T:0.11
Consensus pattern (38 bp):
CTGCACAAGGAGGCAAAAAAGAGGCTCACACACATAAT
Found at i:53693 original size:26 final size:27
Alignment explanation
Indices: 53661--53713 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
53651 ATGAAATGTA
53661 TATATAA-TTTAATGCCAAAAAGATAT
1 TATATAATTTTAATGCCAAAAAGATAT
53687 TATATAATTTTTAATGCCAAAAAGATA
1 TATATAA-TTTTAATGCCAAAAAGATA
53714 ATTTAATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 7 0.28
28 18 0.72
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (27 bp):
TATATAATTTTAATGCCAAAAAGATAT
Found at i:53765 original size:11 final size:11
Alignment explanation
Indices: 53749--53774 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
53739 ATATATAATT
53749 TAATGTATATA
1 TAATGTATATA
53760 TAATGTATATA
1 TAATGTATATA
53771 TAAT
1 TAAT
53775 TTTTTATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (11 bp):
TAATGTATATA
Found at i:54358 original size:314 final size:312
Alignment explanation
Indices: 53948--55030 Score: 1076
Period size: 314 Copynumber: 3.4 Consensus size: 312
53938 CCCTAGAACA
* *
53948 CGTTTTTAGCCAAAAACCGTGTTGATTATTACACGATTTCGGCTAAAATTTTGCAAAAATTGACT
1 CGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGCTAAAATTTTACAAAAATTGACT
* *
54013 CGAAAGATATTTCCTCAATTTTTAGCCACAATACTCA-AAAAGAATATATAATTCAACGCCAAAA
66 CGAAAGATATTTCCTCAATTTTTTGCCAAAATACTCATAAAA-AATATATAATTCAACGCCAAAA
*
54077 AGATTGAAGGGCCTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTCCAAGTTAATTTCTAATT
130 AGATTGAAGGGCCTTTTACGCTTCTAATATCG-TTTTCCTATTTTTTCCAA-TTAATTT-TAATT
* * * *
54142 AAATCGAAACATGATTCAGATGCTTATAATAACAA-TGACTGAGATTTGGTTAGATGAATATAGC
192 AAATCGAAATAAGATTCAGATGCTTATAATAACAATTGACTGAGATTTGATTAGATGAATATAGA
* * *
54206 TATTTCAAGGAGTCTCAACACCAAAATCATGCAAAACTCAAG-CGGACCCCGGAACG
257 TATTTCAAGGAGTCTCGACACCAAAATCATGCAAAACT-GAGCCGGACCCCGAAACG
** *
54262 CGTTTTTAGCCAAAAATTGTGATGATTATTACACGGTTTCGGCTAAAATTTTACAAAAATTGAC-
1 CGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGCTAAAATTTTACAAAAATTGACT
* * *
54326 CTGAAAGATATTTCATCAATTTTTTGCCACAATACTAATAAAAAATATATAATTCAACGCCAAAA
66 C-GAAAGATATTTCCTCAATTTTTTGCCAAAATACTCATAAAAAATATATAATTCAACGCCAAAA
* ** * * *
54391 GGATTGAAGGGCCTTTTATACTTCTATTATCGTTTT--T-TTTTCT-AAATTAATTTTAATTAAA
130 AGATTGAAGGGCCTTTTACGCTTCTAATATCGTTTTCCTATTTTTTCCAATTAATTTTAATTAAA
* * * * *
54452 TCGAAATAAGATTTAGATACTCGTAAAAACAAATCCTTAAATGCAATGTGACTAAGATTTTATTA
195 TCGAAATAAGATTCAGATGCT--T----A-TAA----T-AA--CAAT-TGACTGAGATTTGATTA
* *
54517 GATGAATATAGATATTTCAAGGAGTCTCGACGTA-AAAAATCATGTAAAACTGAGCCGGAGCCCC
245 GATGAATATAGATATTTCAAGGAGTCTCGAC--ACCAAAATCATGCAAAACTGAGCCGGA-CCCC
54581 GAAACG
307 GAAACG
* * * * * * * * * *
54587 CGTTTTTAGTCAAAAATCATGATGGTTAGTATACAATTTTGGCTAAAATTTTGCAAAAAAATGAC
1 CGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGCTAAAATTTTAC-AAAAATTGAC
* * * * ** * *
54652 TCGAGAA-TTTTTTTCTCAATTTTTGGATAAAATACTCATAAAATATATAAATAATTTAACGCC-
65 TCGA-AAGATATTTCCTCAATTTTTTGCCAAAATACTCATAAAA-A-ATATATAATTCAACGCCA
* * * * * * *
54715 AAAATATTGGAGGACTTTTTACGCTTTTAATATCATTTTCC-ATATTTTTCTGAATTAACTTTTA
127 AAAAGATTGAAGGGCCTTTTACGCTTCTAATATCGTTTTCCTAT-TTTTTC-CAATTAA-TTTTA
* ** * * *
54779 ATTAAATCGAAATAAGATTCAAATGCTCGTAAAAACAAATTTTAGTTGAGATTTGATTAGATGAA
189 ATTAAATCGAAATAAGATTCAGATGCTTATAATAAC-AA-TTGA-CTGAGATTTGATTAGATGAA
* * * * * *
54844 TATGGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCCGAAACG
251 TATAGATATTTCAAGGAGTCTCGACACC-AAAATCATGCAAAACTGAGCCGGACCCCGAAACG
* * * *
54907 CTTTTTTAGCCAAAAACTGTGATAATTATTACACGATTTCGGCTAAAATTTTATAAAAATTGACT
1 CGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGCTAAAATTTTACAAAAATTGACT
* * *
54972 CGAAAAATATTTCCTCAATTTTTT-CCTAAAATCCTCATAAAAAATATATATTTCAACGC
66 CGAAAGATATTTCCTCAATTTTTTGCC-AAAATACTCATAAAAAATATATAATTCAACGC
55031 GAGATAATCA
Statistics
Matches: 622, Mismatches: 106, Indels: 79
0.77 0.13 0.10
Matches are distributed among these distances:
307 25 0.04
308 7 0.01
309 3 0.00
310 5 0.01
311 1 0.00
313 6 0.01
314 143 0.23
315 4 0.01
317 13 0.02
318 4 0.01
319 44 0.07
320 55 0.09
321 66 0.11
323 45 0.07
324 19 0.03
325 54 0.09
326 40 0.06
327 33 0.05
328 15 0.02
329 1 0.00
330 4 0.01
332 6 0.01
333 29 0.05
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (312 bp):
CGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGCTAAAATTTTACAAAAATTGACT
CGAAAGATATTTCCTCAATTTTTTGCCAAAATACTCATAAAAAATATATAATTCAACGCCAAAAA
GATTGAAGGGCCTTTTACGCTTCTAATATCGTTTTCCTATTTTTTCCAATTAATTTTAATTAAAT
CGAAATAAGATTCAGATGCTTATAATAACAATTGACTGAGATTTGATTAGATGAATATAGATATT
TCAAGGAGTCTCGACACCAAAATCATGCAAAACTGAGCCGGACCCCGAAACG
Found at i:69238 original size:313 final size:313
Alignment explanation
Indices: 68670--69287 Score: 1218
Period size: 313 Copynumber: 2.0 Consensus size: 313
68660 GTAAAAGACT
68670 CATAACTAATAAAATAAAAACAGAAATTGTCAATTGGTTTTTGCTACCCAACCATGGTAGATGGG
1 CATAACTAATAAAATAAAAACAGAAATTGTCAATTGGTTTTTGCTACCCAACCATGGTAGATGGG
68735 GGTGCCCTCCTTTAGCCTAAAGCTGGGCGGCTGGCTGACGTTGCTCGCTTCACCTCAGCAAATGC
66 GGTGCCCTCCTTTAGCCTAAAGCTGGGCGGCTGGCTGACGTTGCTCGCTTCACCTCAGCAAATGC
68800 TTTAGACTAGGTGGGCAATAAAATAAACTCAACAAGGTACAAAACTTCTAACAAATCCAAAAGAG
131 TTTAGACTAGGTGGGCAATAAAATAAACTCAACAAGGTACAAAACTTCTAACAAATCCAAAAGAG
68865 AAAAACCTCAACAATGCATTATGCATACAATGAAACAATTAAAGGTTGCTTTATGGACCAAACCA
196 AAAAACCTCAACAATGCATTATGCATACAATGAAACAATTAAAGGTTGCTTTATGGACCAAACCA
68930 ACCAAAGAAGGTAAAGAACTAGTGGGGACGGAGAGAATTATCTCTAACAAATC
261 ACCAAAGAAGGTAAAGAACTAGTGGGGACGGAGAGAATTATCTCTAACAAATC
*
68983 CATAACTAATAAAATAAAAACAGAAATTGTCAATTGGTTTTTGCTACCCAACCATGGTGGATGGG
1 CATAACTAATAAAATAAAAACAGAAATTGTCAATTGGTTTTTGCTACCCAACCATGGTAGATGGG
*
69048 GGTGCCCTCCTTTAGCCTAAAGCTGGGCGGCTGGCTGACGTTGCTCGCTTCGCCTCAGCAAATGC
66 GGTGCCCTCCTTTAGCCTAAAGCTGGGCGGCTGGCTGACGTTGCTCGCTTCACCTCAGCAAATGC
69113 TTTAGACTAGGTGGGCAATAAAATAAACTCAACAAGGTACAAAACTTCTAACAAATCCAAAAGAG
131 TTTAGACTAGGTGGGCAATAAAATAAACTCAACAAGGTACAAAACTTCTAACAAATCCAAAAGAG
69178 AAAAACCTCAACAATGCATTATGCATACAATGAAACAATTAAAGGTTGCTTTATGGACCAAACCA
196 AAAAACCTCAACAATGCATTATGCATACAATGAAACAATTAAAGGTTGCTTTATGGACCAAACCA
69243 ACCAAAGAAGGTAAAGAACTAGTGGGGACGGAGAGAATTATCTCT
261 ACCAAAGAAGGTAAAGAACTAGTGGGGACGGAGAGAATTATCTCT
69288 CAGGTCTCAA
Statistics
Matches: 303, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
313 303 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (313 bp):
CATAACTAATAAAATAAAAACAGAAATTGTCAATTGGTTTTTGCTACCCAACCATGGTAGATGGG
GGTGCCCTCCTTTAGCCTAAAGCTGGGCGGCTGGCTGACGTTGCTCGCTTCACCTCAGCAAATGC
TTTAGACTAGGTGGGCAATAAAATAAACTCAACAAGGTACAAAACTTCTAACAAATCCAAAAGAG
AAAAACCTCAACAATGCATTATGCATACAATGAAACAATTAAAGGTTGCTTTATGGACCAAACCA
ACCAAAGAAGGTAAAGAACTAGTGGGGACGGAGAGAATTATCTCTAACAAATC
Found at i:78839 original size:6 final size:6
Alignment explanation
Indices: 78828--78859 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
78818 TAACCACAGC
78828 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT
78860 GCTTTACTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:85716 original size:11 final size:11
Alignment explanation
Indices: 85700--85730 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
85690 TGGCCCAAGG
85700 AAAAAAAGAAA
1 AAAAAAAGAAA
85711 AAAAAAAGAAA
1 AAAAAAAGAAA
*
85722 AAGAAAAGA
1 AAAAAAAGA
85731 TAGCTTAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:88272 original size:331 final size:329
Alignment explanation
Indices: 87815--91945 Score: 3735
Period size: 331 Copynumber: 12.5 Consensus size: 329
87805 CCCAAAATTT
* * * * *
87815 TTTTTGGCAAAAATACTCATAAAATATATATAATTCTACGACAAAAAGATTGGAGAACTTTTCAC
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* * *
87880 GCTTTTAATATCATTTTTCATA-TTTTCTTAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
66 GCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* * ** * * * *
87944 TGCACGTAAAAGCAAATCCTTAAAT-CTAATAAGGCTAAGGTTTGATTAGATTAATAAAGATATT
131 TGCTCGTAAAAACAAATCCTTAAATGC-AATGTGGCTGAGATTTGATTAGATGAATATAGATATT
* * * * ** * *
88008 TCTAGGAGTCTCGGCACCAAAAATCATGCAATACAT-AGTCGTAGCCCCAAAACACATTTGTAGC
195 TCAAGGAGTCTCGGCACCAAAAATCATGCAAAAC-TGAGCCG-GGCCCCGGAACGC-TTTTTAGC
** *
88072 CAAAAACCGTGATGGTTAGTACACGATTTCAACTAAAATTTTG-AAAAATTAACCCGAAAGATAT
257 CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATAT
88136 TTCCTCAA
322 TTCCTCAA
* * * * * * * *
88144 TTTTTGGATAAAATACTCATAAAAAATATATAATTCGATGTCAAAAAGATCGAAGGGCTTTTAAC
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* ** * * *
88209 GCTTCTAAAATTATTTTTCCTAATTTTTCCGAATTAATTTTTAATTAAATCGAAACAAGATTCAG
66 GCTTCTAATATCGTTTTTCAT-ATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
* * * *
88274 ATGCTCGTAAAAACAAATCCTTAAAT-CAAATGTGACTGGGATTTGGTTAGATGAATATAGATTT
130 ATGCTCGTAAAAACAAATCCTTAAATGC-AATGTGGCTGAGATTTGATTAGATGAATATAGATAT
* * * * *
88338 TTGAAGGATTCTTGGCACCAAAAATCATGCAAAACTGAGCCGAGCTCC-GAACGCGTTTTTAGCC
194 TTCAAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGC-TTTTTAGCC
* * * * *
88402 GAAAACCGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATTGACTCGGAAGATTTT
258 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATT
88467 TCCTCAA
323 TCCTCAA
* * * * *
88474 -TTTCGAGCGAAAATACTCATAAAAAATATATAATTCAACGCCAAAAA-ATTTGAAAGCCTTTTT
1 TTTTTG-GCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGA-TTGGAGGAC-TTTT
* ** * * *
88537 CA--CTTCTAATACCGTTTTTCCTAGCTATTTTATTTCCAAATTAATTTCTGATTAAATTGAAAT
63 CACGCTTCTAATATCGTTTTT-C-A--TA--TT-TTTCTGAATTAATTTCTAATTAAATCGAAAC
* * * * * * *
88600 AAGATTTAGATACTCATAAAAACAAATCCTCAAATACAATGTGGCTGAGATTTGGTTAGAAGAAT
121 AAGATTCAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAAT
* * * * * *
88665 ATGGATATATTTTATGGATTCTTC-GCGCCAAAAATTATGCAAAACTG-GCCCAGGGCCCCGGAA
186 AT--AGATATTTCAAGGAGTC-TCGGCACCAAAAATCATGCAAAACTGAG-CC-GGGCCCCGGAA
* * * * *
88728 CGCGTTTTTAGGCAAAAAACCGTGATGATTATTACACGATTTCGGCTAAATTTTTGTAAAAAATG
246 CGC-TTTTTA-GCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG-CAAAAAT-
* **
88793 TGTTCATGAAAG-TAATTTCCTCAAA
307 TG-ACCCGAAAGAT-ATTTCCTC-AA
* * * * * * * *
88818 TTTTTAGCCATAATACTCATAAAAATTATATAATTCAATGCCAAAAAGATTGAAGGATTTTTCAT
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* ** *
88883 GCTTCTAATATCATTTTTCTTATTATTTTTC-GAATTAATTTCTAATTAAATTAAAACATGATTC
66 GCTTCTAATATCGTTTTTC--A-TATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTC
* * *** * * * * *
88947 ATATGCTTGT-TTTACAAATCCTCAAATCCAATGTGGCATGAGATTTCG-CTAAATGGATATAGA
128 AGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC-TGAGATTT-GATTAGATGAATATAGA
* * * *
89010 TATTTCAAGGAGTCTCGGCTGCCAAAAACCATGCAACACTGAACC-GG----GG--C-C------
191 TATTTCAAGGAGTCTCGGC-ACCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGCTTTTTA
* * * * * *** *
89061 -CC-AGAACGCGT--T-TTTAGTACAAGATTTCGGCTAATATTTTGAAAAAATTGACTAAAAATA
255 GCCAAAAAC-CGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGA
*
89121 TTTTTCCTCAA
319 TATTTCCTCAA
* * * * * *
89132 TTTTTGTCTAAAAAACACATAAAATATATATAATTCAACTCTAAAAAGATTGGAGGACTTTTCAC
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* * * * * *
89197 GGTTTTAATATCGTTTTTCATATTTTTATTAATTAATTTCTAATTAAATCGAAACACGATTCAAA
66 GCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* * * *
89262 CGCTCGCAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATGGATATCT
131 TGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTT
** * *
89327 CAAGGAGTC-CTGG--CGTAAAATCATGCAAAAATG-GCCCTGGGCCCTGGAACGCTTTTTAGCC
196 CAAGGAGTCTC-GGCACCAAAAATCATGCAAAACTGAG-CC-GGGCCCCGGAACGCTTTTTAGCC
* * * * * *
89388 AAAAATCGTGATGATTATTACACGATTTCGGCTAAAATTTTTCAAAAAATTAATCCGAAAGATAT
258 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC-AAAAATTGACCCGAAAGATAT
89453 TTCCTCAA
322 TTCCTCAA
* * * * *
89461 TTTTTTGCTAAAATACTCATAAAAAA-ATATAATTCAAAGCCAAAAAAATTGGAGGACCTTTCAA
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* *
89525 G-TTCTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACACGGTTCAG
66 GCTTC-TAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
* * * * * *
89589 ATCCTCGTAAAAACTAATCCTTAAATGCAATGTGGTTGACATTTTATTAGAT-AGTTATAGATA-
130 ATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGA-ATATAGATAT
* * *
89652 TTCTAAGGAGTCTCGACACCAAAAATCATGCAAAACTGAACCGGG-CCCGAAACGCATTTTTTAG
194 TTC-AAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGC--TTTTTAG
* * * * **
89716 CAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGAACCGAAATTTT
256 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAA-GAT
* *
89781 TTTTACTCAA
320 ATTTCCTCAA
* * * * * *
89791 CTTTTT-GTTAAAATACTCA-AGAAATAGATATAATTTAACACCAAAAAGATTTGAGGACTTTTC
1 -TTTTTGGCTAAAATACTCATA-AAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTC
* * *
89854 ACGCTTTTCATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCA
64 ACGCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * * *
89919 TATGCTCGTAAAAACAAATCCTTAACTACAATGTGGCTGAGATTTGATTAGATGAATATGGATAT
129 GATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGATAT
* ** * **
89984 CTCAAGGAGTC-CTGGCATGAAAAATCATGCAAAACTGACCCTGGGCCCTAGAACGCTTTTTAGC
194 TTCAAGGAGTCTC-GGCACCAAAAATCATGCAAAACTGAGCC-GGGCCCCGGAACGCTTTTTAGC
* * * * * *
90048 CAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGATCGGAAAGATAT
257 CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATAT
90113 TTCCTCAA
322 TTCCTCAA
** * * * * *
90121 TTTTTTACTAAAATACTCAT--AAAA-ATATAATTCAACACCAAAAATATTGAAGGACCTTTCAA
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* * * *
90183 G-TTCTTATATCGCTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACACGGTTCAGA
66 GCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* * * *
90247 TCCTCGTAAAAACAAATCCTTAAATGCAATATAGCTGAGATTTGATTAGATGGATATAGATA-TT
131 TGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTT
* ** * *
90311 CTAAGGAGTCTCGACGTCAAAAATCATGCAAAACTGAACCGGG-CCCGAAACGCGTTTTTTAGCA
196 C-AAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGC--TTTTTAGC-
* * * * *
90375 AAAAAAAAAAAATCGTGATGGTTACTACACGATTTCGGGTAAAATTTTGC-AAAATATGAACCGA
257 ------CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAT-TGACCCGA
* *
90439 AA-ATTTTTTTACTCAA
315 AAGA--TATTTCCTCAA
* * * * * *
90455 TTTTTTGGTTAAAAAACTCAT-AGAAATAGGTAATAATTTAACACCAAAAAGATTTGAGGACTTT
1 -TTTTTGGCTAAAATACTCATAAAAAATA--T-ATAATTCAACGCCAAAAAGATTGGAGGACTTT
* * *
90519 TCACGCTTTTCATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATT
62 TCACGCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATT
* * *
90584 CATATGCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGGATATAGAT
127 CAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGAT
* * *
90649 ATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCAGGGCCCCGAAACGCGTTTTTA
192 ATTTCAAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAGCC-GGGCCCCGGAACGC-TTTTTA
* * * * * * *
90714 GCAAAAAACCGT-A-----ACGTACATGATTTCGACTCAAATTTTACAAAAAATGACCCGAAAAA
255 GCCAAAAACCGTGATGGTTA-GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGA
90773 GT-TTTCCTCAA
319 -TATTTCCTCAA
** * * * * *
90784 TTTTTAACTAAAATACTCATGAAAGAGATATAATTTAAAGCCAAAAAGATTGGAGGACTTTTCAC
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* *
90849 GCCTT-TCATACCGTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCA
66 G-CTTCTAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * * * * *
90913 GATGCTCGTAAAATCAAATTCTTTAATGCAATGTGGCCGAAATTTGATTAGATGAATATGGATAT
129 GATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGATAT
* * ** * * * *
90978 CTCAAGGAGTCTTGGCATGAAATATCATGCAAAACTAACCCAGGGCCCTGGAACGCTTTTTAGCC
194 TTCAAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAGCC-GGGCCCCGGAACGCTTTTTAGCC
* * * * ** * * *
91043 AAAAACCGTGATGATTATTAGACGATTTTGGCTAAAATTTTGCAAAAAAAAAGACTC-AAAAAAA
258 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC--AAAAATTGACCCGAAAGATA
91107 TTTTCCTCAA
321 -TTTCCTCAA
* * * * * *
91117 TTTTTGGATAAAATACTTATAAAATATATATAATTTAACGCCAAAAAAATTGGAGGACTTTTCAT
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* * *
91182 GCTTTTAATAACATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
66 GCTTCTAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
* * * * * * *
91247 ATACTCGCAAAAACAAAAT-TTTAAATCCAATGTAGCTTG-GATTTGCTTAGATGAATATGGATA
130 ATGCTCGTAAAAAC-AAATCCTTAAATGCAATGTGGC-TGAGATTTGATTAGATGAATATAGATA
* * * ** * * **
91310 TATCAAGGAGTCTTGACGGCAAAAATCATG-TAAACTGAGTCGGGGCCCCTAAACGCTTTTTTAG
193 TTTCAAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAG-CCGGGCCCCGGAACGC-TTTTTAG
* * * * * * *
91374 CCAAAAACTGTGATGGTTATTACACGATTTTGGCTAAAATTATGTAAAAGTTGACCCGAAAGATT
256 CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATA
91439 TTTCCTCAA
321 TTTCCTCAA
* * * *
91448 CTTTTTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACTCCAAAAAGATTGAAGGGCTTT
1 ----TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTT
* * * ** *
91513 TGACGCTTCTAATATCGTTTTTCCTATATTTCCAAATTAATTTCTAATTAAATCGAAACAAGATA
62 TCACGCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATT
* * * * * *
91578 CAGATGCTCATAAAAACATATCCATAAATCCAATGCGTCTGAGATTTGATTAGATGAATATAGAT
127 CAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGAT
* * * * * *
91643 ATTTCAAGTAGTTTCGG-AGCCAAAAATCATGCAAAATTGAGCTGGGTCCCCGGAACGGGTTATT
192 ATTTCAAGGAGTCTCGGCA-CCAAAAATCATGCAAAACTGAGCCGGG-CCCCGGAAC-GCTTTTT
* * **
91707 AGCCAAAAACCGTGATGGTTAGTTAGTACACGATTTCTGATAAAATTTTGCAAAAATTGACATGA
254 AGCCAAAAACCGTGAT-G---GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGA
91772 AAGAT-TTCTCCTCAA
315 AAGATATT-TCCTCAA
* * * * *
91787 ATTTTGGCTAAATTACTCAT-AAAAATATATAATTCAATGCCAAAAAGATTGGAGG-CCTTTCAT
1 TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
* * * * * * * *
91850 GCTTTTAATATCGTATTTCTTATTTTTTCTAAATTAATTTCTAAATAAATCAAAACAAGTTTCAT
66 GCTTCTAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
* *
91915 ATGCTCGTAAAAACAAATTCTTAAATCCAAT
130 ATGCTCGTAAAAACAAATCCTTAAATGCAAT
91946 TAATGTTGTT
Statistics
Matches: 3115, Mismatches: 539, Indels: 291
0.79 0.14 0.07
Matches are distributed among these distances:
309 17 0.01
311 11 0.00
312 70 0.02
313 22 0.01
314 69 0.02
315 13 0.00
316 3 0.00
317 8 0.00
318 25 0.01
319 1 0.00
320 4 0.00
321 4 0.00
324 7 0.00
325 10 0.00
326 221 0.07
327 186 0.06
328 200 0.06
329 218 0.07
330 217 0.07
331 404 0.13
332 45 0.01
333 336 0.11
334 219 0.07
335 234 0.08
336 7 0.00
337 41 0.01
338 23 0.01
339 104 0.03
340 119 0.04
341 161 0.05
342 19 0.01
343 28 0.01
344 48 0.02
345 21 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (329 bp):
TTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCAC
GCTTCTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
TGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTT
CAAGGAGTCTCGGCACCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGCTTTTTAGCCAAA
AACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTCC
TCAA
Found at i:90676 original size:667 final size:662
Alignment explanation
Indices: 87815--91945 Score: 3736
Period size: 668 Copynumber: 6.2 Consensus size: 662
87805 CCCAAAATTT
** *
87815 TTTTTGGCAAAAATACTCATAAAATATATATAATTCT-ACGA-CAAAAAGATTGGAGAACTTTTC
1 TTTTTGGTTAAAATACTCATAAAATATA-ATAATT-TAAC-ACCAAAAAGATTGGAGGACTTTTC
* *
87878 ACGCTTTTAATATCATTTTTCATA-TTTTCTTAATTAATTTCTAATTAAATCGAAACAAGATTCA
63 ACGCTTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * * ** * * * **
87942 GATGCACGTAAAAGCAAATCCTTAAAT-CTAATAAGGCTAAGGTTTGATTAGATTAATAAAGATA
128 TATGCTCGTAAAAACAAATCCTTAAATAC-AATGTGGCTGAGATTTGATTAGATGAATATGGATA
* * * * * ** * * * * * *
88006 TTTCTAGGAGTCTCGGCACCAAAAATCATGCAATACAT-AGTC-GTAGCCCCAAAACACATTTGT
192 TCTCAAGGAGTCTCGACGCCAAAAATCATGCAAAAC-TGACCCTG-GGCCCTAGAACGCGTTTTT
* * * * *
88069 AGCCAAAAACCGTGATGGTTAGTACACGATTTCAACTAAAATTTTG-AAAAATTAACCCGAAAGA
255 AGCCAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGA
* * * * * *
88133 TATTTCCTCAATTTTTGGA-TAAAATACTCATAAAAAATATATAATTCGATGTCAAAAAGATCGA
320 TATTTCCTCAATTTTT-TACTAAAATACTCAT-AAAAAGATATAATTCAAAGCCAAAAAGATTGA
* * * * ** * * *
88197 AGG-GCTTTTAACGCTTCTAAAATTATTTTTCCTAATTTTTCCGAATTAATTTTTAATTAAATCG
383 AGGACCTTTCAA-GCTTCTTATATCGTTTTTCAT-ATTTTTCTGAATTAATTTCTAATTAAATCG
* * * *
88261 AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT-CAAATGTGACTGGGATTTGGTTAGA
446 AAACAAGATTCAGATCCTCGTAAAAACAAATCCTTAAATGC-AATGTGGCTGAGATTTGATTAGA
* * * * * * *
88325 TGAATATAGAT-TTTTGAAGGATTCTTGGCACCAAAAATCATGCAAAACTGAGCCGAGCTCCG-A
510 TGAATATAGATATTCTCAAGGAGTCTCGACACCAAAAATCATGCAAAACTGAACCGGGC-CCGAA
** ** * *
88388 ACGCG-TTTTTAGCCGAAAACCGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAAATT
574 ACGCGTTTTTTAGCAAAAAAATGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAAT
* * *
88452 G-ACTCG-GAAGATTTTTCCTCAA
639 GAACACGAAAATATTTTTCCTCAA
* ** * * * * * *
88474 -TTTCGAGCGAAAATACTCATAAAAAATATATAATTCAACGCCAAAAA-ATTTGAAAGCCTTTTT
1 TTTTTG-GTTAAAATACTCATAAAATATA-ATAATTTAACACCAAAAAGA-TTGGAGGAC-TTTT
* * * * * *
88537 CA--CTTCTAATACCGTTTTTCCTAGCTATTTTATTTCCAAATTAATTTCTGATTAAATTGAAAT
62 CACGCTTTTAATATCGTTTTT-C-A--TA--TT-TTTCTAAATTAATTTCTAATTAAATCGAAAC
* * * * * * *
88600 AAGATTTAGATACTCATAAAAACAAATCCTCAAATACAATGTGGCTGAGATTTGGTTAGAAGAAT
120 AAGATTCATATGCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGAAT
* * * * * * * **
88665 ATGGATATATTTTATGGATTCTTCG-CGCCAAAAATTATGCAAAACTGGCCCAGGGCCCCGGAAC
185 ATGG--ATATCTCAAGGAGTC-TCGACGCCAAAAATCATGCAAAACTGACCCTGGGCCCTAGAAC
* * * * *
88729 GCGTTTTTAGGCAAAAAACCGTGATGATTATTACACGATTTCGGCTAAATTTTTGTAAAAAATGT
247 GCGTTTTTA-GCCAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTG-CAAAAAT-T
* ** * * * * *
88794 GTTCATGAAAG-TAATTTCCTCAAATTTTTAGCCATAATACTCATAAAAATTATATAATTCAATG
309 G-ACCCGAAAGAT-ATTTCCTCAATTTTTTA-CTAAAATACTCATAAAAA-GATATAATTCAAAG
** * * *
88858 CCAAAAAGATTGAAGGATTTTTCATGCTTCTAATATCATTTTTCTTATTATTTTTC-GAATTAAT
370 CCAAAAAGATTGAAGGACCTTTCAAGCTTCTTATATCGTTTTTC--A-TATTTTTCTGAATTAAT
** * * * * *** * *
88922 TTCTAATTAAATTAAAACATGATTCATATGCTTGT-TTTACAAATCCTCAAATCCAATGTGGCAT
432 TTCTAATTAAATCGAAACAAGATTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATGTGGC-T
* * * * * * *
88986 GAGATTTCG-CTAAATGGATATAGATATT-TCAAGGAGTCTCGGCTGCCAAAAACCATGCAACAC
496 GAGATTT-GATTAGATGAATATAGATATTCTCAAGGAGTCTCGAC-ACCAAAAATCATGCAAAAC
* *
89049 TGAACCGGGGCCCCAGAACGC--------G--------T-T--T--TTAGTACAAGATTTCGGCT
559 TGAACC-GGGCCCGA-AACGCGTTTTTTAGCAAAAAAATGTGATGGTTAGTACACGATTTCGGCT
*
89093 AATATTTTG-AAAAAATTG-ACTA--AAAATATTTTTCCTCAA
622 AAAATTTTGCAAAAAA-TGAAC-ACGAAAATATTTTTCCTCAA
* * * * *
89132 TTTTT-GTCTAAAAAACACATAAAATATATATAATTCAACTCTAAAAAGATTGGAGGACTTTTCA
1 TTTTTGGT-TAAAATACTCATAAAATATA-ATAATTTAACACCAAAAAGATTGGAGGACTTTTCA
* * * * *
89196 CGGTTTTAATATCGTTTTTCATATTTTTATTAATTAATTTCTAATTAAATCGAAACACGATTCAA
64 CGCTTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAT
* * *
89261 ACGCTCGCAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATGGATATC
129 ATGCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGAATATGGATATC
** * * *
89326 TCAAGGAGTC-CTG--GCGTAAAATCATGCAAAAATGGCCCTGGGCCCTGGAACGC-TTTTTAGC
194 TCAAGGAGTCTC-GACGCCAAAAATCATGCAAAACTGACCCTGGGCCCTAGAACGCGTTTTTAGC
* * * *
89387 CAAAAATCGTGATGATTATTACACGATTTCGGCTAAAATTTTTCAAAAAATTAATCCGAAAGATA
258 CAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGC-AAAAATTGACCCGAAAGATA
* * * *
89452 TTTCCTCAATTTTTTGCTAAAATACTCATAAAAAAATATAATTCAAAGCCAAAAAAATTGGAGGA
322 TTTCCTCAATTTTTTACTAAAATACTCATAAAAAGATATAATTCAAAGCCAAAAAGATTGAAGGA
89517 CCTTTCAAG-TTCTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACA
387 CCTTTCAAGCTTCTT-ATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACA
* * * * * * *
89581 CGGTTCAGATCCTCGTAAAAACTAATCCTTAAATGCAATGTGGTTGACATTTTATTAGAT-AGTT
451 AGATTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGA-AT
*
89645 ATAGATATTCT-AAGGAGTCTCGACACCAAAAATCATGCAAAACTGAACCGGGCCCGAAACGCAT
515 ATAGATATTCTCAAGGAGTCTCGACACCAAAAATCATGCAAAACTGAACCGGGCCCGAAACGCGT
*
89709 TTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGAAC-C
580 TTTTTAGCAAAAAAATGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGAACAC
* * *
89773 GAAATTTTTTTTACTCAA
645 GAAAATATTTTTCCTCAA
* *
89791 CTTTTT-GTTAAAATACTCA-AGAAATAGATATAATTTAACACCAAAAAGATTTGAGGACTTTTC
1 -TTTTTGGTTAAAATACTCATA-AAATATA-ATAATTTAACACCAAAAAGATTGGAGGACTTTTC
*
89854 ACGCTTTTCATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCA
63 ACGCTTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCA
*
89919 TATGCTCGTAAAAACAAATCCTTAACTACAATGTGGCTGAGATTTGATTAGATGAATATGGATAT
128 TATGCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGAATATGGATAT
* *
89984 CTCAAGGAGTCCTGGCATG--AAAAATCATGCAAAACTGACCCTGGGCCCTAGAACGC-TTTTTA
193 CTCAAGGAGT-CTCG-ACGCCAAAAATCATGCAAAACTGACCCTGGGCCCTAGAACGCGTTTTTA
* *
90046 GCCAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGATCGGAAAGAT
256 GCCAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGAT
*
90111 ATTTCCTCAATTTTTTACTAAAATACTCAT-AAAA-ATATAATTCAACA-CCAAAAATATTGAAG
321 ATTTCCTCAATTTTTTACTAAAATACTCATAAAAAGATATAATTCAA-AGCCAAAAAGATTGAAG
*
90173 GACCTTTCAAG-TTCTTATATCGCTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAAC
385 GACCTTTCAAGCTTCTTATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAAC
* * * * *
90237 ACGGTTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATATAGCTGAGATTTGATTAGATGGAT
450 AAGATTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAAT
**
90302 ATAGATATTCT-AAGGAGTCTCGACGTCAAAAATCATGCAAAACTGAACCGGGCCCGAAACGCGT
515 ATAGATATTCTCAAGGAGTCTCGACACCAAAAATCATGCAAAACTGAACCGGGCCCGAAACGCGT
* * *
90366 TTTTTAGCAAAAAAAAAAAAATCGTGATGGTTACTACACGATTTCGGGTAAAATTTTGCAAAATA
580 TTTTTAGC------AAAAAAAT-GTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAA
* *
90431 TGAAC-CGAAAATTTTTTTACTCAA
638 TGAACACGAAAATATTTTTCCTCAA
* *
90455 TTTTTTGGTTAAAAAACTCATAGAAATAGGTAATAATTTAACACCAAAAAGATTTGAGGACTTTT
1 -TTTTTGGTTAAAATACTCATA-AAATA--TAATAATTTAACACCAAAAAGATTGGAGGACTTTT
*
90520 CACGCTTTTCATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTC
62 CACGCTTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTC
* *
90585 ATATGCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGGATATAGATA
127 ATATGCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGAATATGGATA
* * * *
90650 TTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCAGGGCCC-CGAAACGCGTTTTTA
192 TCTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGACCCTGGGCCCTAG-AACGCGTTTTTA
* * ** * * * * *
90714 GCAAAAAACCGT-A--A--CGTACATGATTTCGACTCAAATTTTACAAAAAATGACCCGAAAAAG
256 GCCAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGA-
* * * *
90774 T-TTTCCTCAATTTTTAACTAAAATACTCATGAAAGAGATATAATTTAAAGCCAAAAAGATTGGA
320 TATTTCCTCAATTTTTTACTAAAATACTCAT-AAAAAGATATAATTCAAAGCCAAAAAGATTGAA
* * * *
90838 GGACTTTTCACGCCTT-TCATACCGTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGA
384 GGACCTTTCAAG-CTTCTTATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGA
* * * * * *
90902 AACAAGATTCAGATGCTCGTAAAATCAAATTCTTTAATGCAATGTGGCCGAAATTTGATTAGATG
447 AACAAGATTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATG
* * * ** * *
90967 AATATGGATA-TCTCAAGGAGTCTTGGCATGAAATATCATGCAAAACT-AACCCAGGGCCCTGGA
512 AATATAGATATTCTCAAGGAGTCTCGACACCAAAAATCATGCAAAACTGAA-CC-GGGCCC-GAA
* ** * * * *
91030 ACGC--TTTTTAGCCAAAAACCGTGATGATTATTAGACGATTTTGGCTAAAATTTTGCAAAAAA-
574 ACGCGTTTTTTAGCAAAAAAATGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAAT
* * * * *
91092 AAAGACTCAAAAAAATTTTCCTCAA
639 GAACAC-GAAAATATTTTTCCTCAA
* * * * *
91117 TTTTTGGATAAAATACTTATAAAATATATATAATTTAACGCCAAAAAAATTGGAGGACTTTTCAT
1 TTTTTGGTTAAAATACTCATAAAATATA-ATAATTTAACACCAAAAAGATTGGAGGACTTTTCAC
* * * *
91182 GCTTTTAATAACATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
65 GCTTTTAATATCGTTTTTCATA-TTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAT
* * * * * *
91247 ATACTCGCAAAAACAAAAT-TTTAAATCCAATGTAGCTTG-GATTTGCTTAGATGAATATGGATA
129 ATGCTCGTAAAAAC-AAATCCTTAAATACAATGTGGC-TGAGATTTGATTAGATGAATATGGATA
* * * * ** * *
91310 TATCAAGGAGTCTTGACGGCAAAAATCATG-TAAACTGAGTCGGGGCCCCTA-AACGCTTTTTTA
192 TCTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGACCCTGGG-CCCTAGAACGCGTTTTTA
* * * * * *
91373 GCCAAAAA-CTGTGATGGTTATTACACGATTTTGGCTAAAATTATGTAAAAGTTGACCCGAAAGA
256 GCCAAAAATC-GTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGA
* * * * **
91437 TTTTTCCTCAACTTTTTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACTCCAAAAAGAT
320 TATTTCCTCAA---TTTTTT-ACTAAAATACTCAT-AAAAAGATATAATTCAAAGCCAAAAAGAT
* * * * * * * **
91502 TGAAGGGCTTTTGACGCTTCTAATATCGTTTTTCCTATATTTCCAAATTAATTTCTAATTAAATC
380 TGAAGGACCTTTCAAGCTTCTTATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATC
* * * * * * * *
91567 GAAACAAGATACAGATGCTCATAAAAACATATCCATAAATCCAATGCGTCTGAGATTTGATTAGA
445 GAAACAAGATTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGA
* * * * * *
91632 TGAATATAGATATT-TCAAGTAGTTTCGGA-GCCAAAAATCATGCAAAATTGAGCTGGGTCCCCG
510 TGAATATAGATATTCTCAAGGAGTCTC-GACACCAAAAATCATGCAAAACTGAACCGGG--CCCG
* * * * ** * *
91695 GAACG-GGTTATTAGCCAAAAACCGTGATGGTTAGTTAGTACACGATTTCTGATAAAATTTTGCA
572 AAACGCGTTTTTTAGCAAAAAAATGTGAT-G---GTTAGTACACGATTTCGGCTAAAATTTTGCA
* * * *
91759 AAAATTG-ACATG-AAAGATTTCTCCTCAA
633 AAAAATGAACACGAAAATATTTTTCCTCAA
* * * * ** * *
91787 ATTTTGGCTAAATTACTCATAAAA-ATATATAATTCAATGCCAAAAAGATTGGAGG-CCTTTCAT
1 TTTTTGGTTAAAATACTCATAAAATATA-ATAATTTAACACCAAAAAGATTGGAGGACTTTTCAC
* * * * *
91850 GCTTTTAATATCGTATTTCTTATTTTTTCTAAATTAATTTCTAAATAAATCAAAACAAGTTTCAT
65 GCTTTTAATATCGTTTTTCATA-TTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAT
* *
91915 ATGCTCGTAAAAACAAATTCTTAAATCCAAT
129 ATGCTCGTAAAAACAAATCCTTAAATACAAT
91946 TAATGTTGTT
Statistics
Matches: 2893, Mismatches: 428, Indels: 293
0.80 0.12 0.08
Matches are distributed among these distances:
637 5 0.00
638 7 0.00
639 30 0.01
640 70 0.02
641 25 0.01
642 44 0.02
643 16 0.01
644 20 0.01
645 3 0.00
646 47 0.02
647 6 0.00
648 35 0.01
649 1 0.00
650 11 0.00
652 83 0.03
653 3 0.00
654 1 0.00
655 2 0.00
656 1 0.00
657 185 0.06
658 174 0.06
659 345 0.12
660 188 0.06
661 144 0.05
662 21 0.01
663 73 0.03
664 110 0.04
665 20 0.01
666 124 0.04
667 356 0.12
668 370 0.13
669 78 0.03
670 39 0.01
671 7 0.00
672 34 0.01
673 25 0.01
674 74 0.03
675 74 0.03
676 33 0.01
677 4 0.00
678 5 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (662 bp):
TTTTTGGTTAAAATACTCATAAAATATAATAATTTAACACCAAAAAGATTGGAGGACTTTTCACG
CTTTTAATATCGTTTTTCATATTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCATAT
GCTCGTAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTC
AAGGAGTCTCGACGCCAAAAATCATGCAAAACTGACCCTGGGCCCTAGAACGCGTTTTTAGCCAA
AAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGACCCGAAAGATATTTC
CTCAATTTTTTACTAAAATACTCATAAAAAGATATAATTCAAAGCCAAAAAGATTGAAGGACCTT
TCAAGCTTCTTATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATT
CAGATCCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGATGAATATAGAT
ATTCTCAAGGAGTCTCGACACCAAAAATCATGCAAAACTGAACCGGGCCCGAAACGCGTTTTTTA
GCAAAAAAATGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGAACACGAAAAT
ATTTTTCCTCAA
Found at i:91389 original size:994 final size:991
Alignment explanation
Indices: 87815--91945 Score: 3937
Period size: 994 Copynumber: 4.2 Consensus size: 991
87805 CCCAAAATTT
* * * * *
87815 TTTTTGGCAAAAATACTCATAAAATATATATAATTCT-ACGACAAAAAGATTGGAGAACTTTTCA
1 TTTTTAGCTAAAATACTCATAAAA-ATATATAATT-TAAAGCCAAAAAGATTGGAGGACTTTTCA
* *
87879 CGCTTTTAATATCATTTTTCATA--TTTTCTTAATTAATTTCTAATTAAATCGAAACAAGATTCA
64 CGCTTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * * * * ** * * * *
87942 GATGCACGTAAAAGCAAATCCTTAAATCTAATAAGG-CTAAGGTTTGATTAGATTAATAAAGATA
129 TATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCCGAA-ATTTGATTAGATGAATATAGATA
* * ** * ** * * * *
88006 TTTCTAGGAGTCTCGGCACCAAAAATCATGCAATAC-ATAGTCGTAGCCCCAAAACACATTTGTA
193 TCTCAAGGAGTCTCGGCATGAAAAATCATGCAAAACTA-ACCCG-GGCCCCAGAACGC-TTTTTA
* * * * ** *
88070 GCCAAAAACCGTGATGGTTAGTACACGATTTCAACTAAAATTTTGAAAAATTA-AC-CCGAAAGA
255 GCCAAAAACCGTGATGATTATTACACGATTTCGACTAAAATTTTGAAAAAATAGACTCAAAAAAA
* * * * *
88133 TATTTCCTCAATTTTTGGATAAAATACTCATAAAAAATATATAATTCGATGTCAAAAAGATCGAA
320 TATTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAATTCAACGCCAAAAAGATTGAA
* * * * * * * *
88198 GGGCTTTTAACGCTTCTAA-AATTATTTTTCCTAATTTTTCCGAATTAATTTTTAATTAAATCGA
385 GGACTTTTCACGCTTTTAATAA-CATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGA
* * * *
88262 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCAAATGT-GACTGGGATTTGGTTAGAT
449 AACAAGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCAATGTAG-CTGAGATTTGATTAGAT
* * * * ** * *
88326 GAATATAGATTTTTGAAGGATTCTTGGCACCAAAAATCATGCAAAACTGAGCCGAGCTCC-GAAC
513 GAATATAGA-TATTCAAGGAGTCTTGACGGCAAAAATCATGCAAAACTGAGCCGGGC-CCTAAAC
* * * *
88390 GCGTTTTTAGCCGAAAAC-CGTGATGGTTAGTATACGATTTCGGCTAAAATTTTGCAAAA-ATTG
576 GCTTTTTTAGCCAAAAACTCGTGATGGTTATTACACGATTTCGGCTAAAATTTTGCAAAATA-TG
* * * *
88453 -ACTCGGAAGATTTTTCCTCAA--TTTCGAGCGAAAATACTCATAAAAAATATATAATTCAACGC
640 AAC-CGAAAGATTTTTCCTCAATTTTTTG-GCTAAAATACTCATAAAAAATATATAATTCAACAC
* * *
88515 CAAAAA-ATTTGAAAGCCTTTTTCA--CTTCTAATACCGTTTTTCCTAGCTATTTTATTTCCAAA
703 CAAAAAGATTTGAAGGAC-TTTTCACGCTTCTAATATCGTTTTT-C-A--TA--TT-TTTCCAAA
* * * * * *
88577 TTAATTTCTGATTAAATTGAAATAAGATTTAGATACTCATAAAAACAAATCCTCAAATACAATGT
760 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATACAATGT
* * * * * * *
88642 GGCTGAGATTTGGTTAGAAGAATATGGATATATTTTATGGATTCTTCG-CGCCAAAAATTATGCA
825 GGCTGAGATTTGATTAGATGAATAT--AGATATTTCAAGGAGTC-TCGACGCCAAAAATCATGCA
* *
88706 AAACTG-GCCCAGGGCCCCGGAACGCGTTTTTAGGCAAAAAACCGTGATGATTATTACACGATTT
887 AAACTGAG-CCAGGGCCCCGAAACGCGTTTTTA-GCAAAAAACCGTGAT-A-TAGTACACGATTT
* * * *** *
88770 CGGCTAAATTTTTGTAAAAAATGTGTTC-ATGAAAGTAATTTCCTCAAA
948 CGACTAAAATTTTGCAAAAAATG-ACCCGA-AAAAGT--TTTCCTC-AA
* * * * * * *
88818 TTTTTAGCCATAATACTCATAAAAATTATATAATTCAATGCCAAAAAGATTGAAGGATTTTTCAT
1 TTTTTAGCTAAAATACTCATAAAAA-TATATAATTTAAAGCCAAAAAGATTGGAGGACTTTTCAC
* * * * ** *
88883 GCTTCTAATATCATTTTTCTTATTATTTT-TCGAATTAATTTCTAATTAAATTAAAACATGATTC
65 GCTTTTAATATCGTTTTTCATATT-TTTTCT-AAATTAATTTCTAATTAAATCGAAACAAGATTC
* *** * * * * * * *
88947 ATATGCTTGT-TTTACAAATCCTCAAATCCAATGTGGCATGAGATTTCG-CTAAATGGATATAGA
128 ATATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGC-CGAAATTT-GATTAGATGAATATAGA
* * * * *
89010 TATTTCAAGGAGTCTCGGC-TGCCAAAAACCATGCAACACTGAACCGGGGCCCCAGAACGCGTTT
191 TATCTCAAGGAGTCTCGGCATG--AAAAATCATGCAAAACT-AACCCGGGCCCCAGAACGCTTTT
* * * *
89074 T------------T-A-G-----TACAAGATTTCGGCTAATATTTTGAAAAAATTGACT-AAAAA
253 TAGCCAAAAACCGTGATGATTATTACACGATTTCGACTAAAATTTTGAAAAAATAGACTCAAAAA
* * ** * * * *
89119 TATTTTTCCTCAATTTTTGTCTAAAAAACACATAAAATATATATAATTCAACTCTAAAAAGATTG
318 AATATTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAATTCAACGCCAAAAAGATTG
* * * *
89184 GAGGACTTTTCACGGTTTTAATATCGTTTTTCATATTTTTAT-T-AATTAATTTCTAATTAAATC
383 AAGGACTTTTCACGCTTTTAATAACATTTTTCATATTTTT-TCTGAATTAATTTCTAATTAAATC
* * * * *
89247 GAAACACGATTCAAACGCTCGCAAAAACAAATCCTTAAATGCAATGTGGCTGAGATTTGATTAGA
447 GAAACAAGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCAATGTAGCTGAGATTTGATTAGA
* * * * * *
89312 TGAATATGGATATCTCAAGGAGTCCTGGC-G-TAAAATCATGCAAAAATG-GCCCTGGGCCCTGG
512 TGAATATAGATAT-TCAAGGAGTCTTGACGGCAAAAATCATGCAAAACTGAG-CC-GGGCCCT-A
* * *
89374 AACGC-TTTTTAGCCAAAAA-TCGTGATGATTATTACACGATTTCGGCTAAAATTTTTCAAAAAA
573 AACGCTTTTTTAGCCAAAAACTCGTGATGGTTATTACACGATTTCGGCTAAAATTTTGCAAAATA
* *
89437 TTAATCCGAAAGATATTTCCTCAATTTTTT-GCTAAAATACTCATAAAAAA-ATATAATTCAA-A
638 TGAA-CCGAAAGATTTTTCCTCAATTTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACA
* * * * **
89499 GCCAAAAA-AATTGGAGGACCTTTCAAG-TTCTTAATATCGTTTTTCATATTTTTCTGAATTAAT
702 -CCAAAAAGATTTGAAGGACTTTTCACGCTTC-TAATATCGTTTTTCATATTTTTCCAAATTAAT
* * * * * * *
89562 TTCTAATTAAATCGAAACACGGTTCAGATCCTCGTAAAAACTAATCCTTAAATGCAATGTGGTTG
765 TTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATACAATGTGGCTG
* * * *
89627 ACATTTTATTAGAT-AGTTATAGATA-TTCTAAGGAGTCTCGACACCAAAAATCATGCAAAACTG
830 AGATTTGATTAGATGA-ATATAGATATTTC-AAGGAGTCTCGACGCCAAAAATCATGCAAAACTG
* * * * *
89690 AACC-GGG-CCCGAAACGCATTTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTTCGGCTAA
893 AGCCAGGGCCCCGAAACGC-GTTTTTAGCAAAAAACCGTGAT--ATAGTACACGATTTCGACTAA
* *** *
89753 AATTTTGCAAAAAATGAACCGAAATTTTTTTTACTCAA
955 AATTTTGCAAAAAATGACCCGAAA-AAGTTTTCCTCAA
* * *
89791 CTTTTT-GTTAAAATACTCA-AGAAATAGATATAATTTAACA-CCAAAAAGATTTGAGGACTTTT
1 -TTTTTAGCTAAAATACTCATA-AAA-ATATATAATTTAA-AGCCAAAAAGATTGGAGGACTTTT
*
89853 CACGCTTTTCATATCGTTTTTCATA-TTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATT
62 CACGCTTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATT
* * * * * *
89917 CATATGCTCGTAAAAACAAATCCTTAACTACAATGTGGCTGAGATTTGATTAGATGAATATGGAT
127 CATATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCCGAAATTTGATTAGATGAATATAGAT
* *
89982 ATCTCAAGGAGTC-CTGGCATGAAAAATCATGCAAAACTGACCCTGGGCCCTAGAACGCTTTTTA
192 ATCTCAAGGAGTCTC-GGCATGAAAAATCATGCAAAACTAACCC-GGGCCCCAGAACGCTTTTTA
* * * ** *
90046 GCCAAAAATCGTGATGATTATTACACGATTTCGACTAAAATTTTGCAAAAATTGA-TCGGAAAGA
255 GCCAAAAACCGTGATGATTATTACACGATTTCGACTAAAATTTTGAAAAAATAGACTCAAAAAAA
* * *
90110 TATTTCCTCAATTTTT-TACTAAAATACTCAT-AAA-A-ATATAATTCAACACCAAAAATATTGA
320 TATTTCCTCAATTTTTGGA-TAAAATACTCATAAAATATATATAATTCAACGCCAAAAAGATTGA
* * * **
90171 AGGACCTTTCAAG-TTCTT-ATATCGCTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCG
384 AGGACTTTTCACGCTT-TTAATAACATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCG
* * * * * *
90233 AAACACGGTTCAGATCCTCGTAAAAACAAATCCTTAAATGCAATATAGCTGAGATTTGATTAGAT
448 AAACAAGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCAATGTAGCTGAGATTTGATTAGAT
* * * * *
90298 GGATATAGATATTCTAAGGAGTCTCGACGTCAAAAATCATGCAAAACTGAACCGGGCCCGAAACG
513 GAATATAGATATTC-AAGGAGTCTTGACGGCAAAAATCATGCAAAACTGAGCCGGGCCCTAAACG
* * * *
90363 CGTTTTTTAGCAAAAAAAAAAAAATCGTGATGGTTACTACACGATTTCGGGTAAAATTTTGCAAA
577 C-TTTTTTAGC------CAAAAACTCGTGATGGTTATTACACGATTTCGGCTAAAATTTTGCAAA
* * * *
90428 ATATGAACCGAAA-ATTTTTTTACTCAATTTTTTGGTTAAAAAACTCAT-AGAAATAGGTAATAA
635 ATATGAACCGAAAGA--TTTTTCCTCAATTTTTTGGCTAAAATACTCATAAAAAATA--T-ATAA
* * * *
90491 TTTAACACCAAAAAGATTTG-AGGACTTTTCACGCTTTTCATATCGTTTTTCATATTTTTCTAAA
695 TTCAACACCAAAAAGATTTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCATATTTTTCCAAA
* *
90555 TTAATTTCTAATTAAATCGAAACAAGATTCATATGCTCGTAAAAACAAATCCTTAAATACAATGT
760 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATACAATGT
*
90620 GGCTGAGATTTGATTAGATGGATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAA
825 GGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAA
* * *
90685 CTGAGCCAGGGCCCCGAAACGCGTTTTTAGCAAAAAACCGT-A-A-CGTACATGATTTCGACTCA
890 CTGAGCCAGGGCCCCGAAACGCGTTTTTAGCAAAAAACCGTGATATAGTACACGATTTCGACTAA
*
90747 AATTTTACAAAAAATGACCCGAAAAAGTTTTCCTCAA
955 AATTTTGCAAAAAATGACCCGAAAAAGTTTTCCTCAA
* * *
90784 TTTTTAACTAAAATACTCATGAAAGAGATATAATTTAAAGCCAAAAAGATTGGAGGACTTTTCAC
1 TTTTTAGCTAAAATACTCAT-AAAAATATATAATTTAAAGCCAAAAAGATTGGAGGACTTTTCAC
* * * * *
90849 GCCTTTCATACCGTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAG
65 GCTTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCAT
* * * *
90914 ATGCTCGTAAAATCAAATTCTTTAATGCAATGTGGCCGAAATTTGATTAGATGAATATGGATATC
130 ATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCCGAAATTTGATTAGATGAATATAGATATC
* * **
90979 TCAAGGAGTCTTGGCATGAAATATCATGCAAAACTAACCCAGGGCCCTGGAACGCTTTTTAGCCA
195 TCAAGGAGTCTCGGCATGAAAAATCATGCAAAACTAACCC-GGGCCCCAGAACGCTTTTTAGCCA
* * * *
91044 AAAACCGTGATGATTATTAGACGATTTTGGCTAAAATTTTGCAAAAAAAAAGACTCAAAAAAAT-
259 AAAACCGTGATGATTATTACACGATTTCGACTAAAATTTTG--AAAAAATAGACTCAAAAAAATA
* * * *
91108 TTTCCTCAATTTTTGGATAAAATACTTATAAAATATATATAATTTAACGCCAAAAAAATTGGAGG
322 TTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAATTCAACGCCAAAAAGATTGAAGG
*
91173 ACTTTTCATGCTTTTAATAACATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAAC
387 ACTTTTCACGCTTTTAATAACATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAAC
* * *
91238 AAGATTCAGATACTCGCAAAAACAAAAT-TTTAAATCCAATGTAGCTTG-GATTTGCTTAGATGA
452 AAGATTCAGATGCTCGCAAAAAC-AAATCCTTAAATCCAATGTAGC-TGAGATTTGATTAGATGA
* * *
91301 ATATGGATATATCAAGGAGTCTTGACGGCAAAAATCATG-TAAACTGAGTCGGGGCCCCTAAACG
515 ATATAGATAT-TCAAGGAGTCTTGACGGCAAAAATCATGCAAAACTGAG-CCGGG-CCCTAAACG
* * *
91365 CTTTTTTAGCCAAAAACT-GTGATGGTTATTACACGATTTTGGCTAAAATTATGTAAAAGT-TGA
577 CTTTTTTAGCCAAAAACTCGTGATGGTTATTACACGATTTCGGCTAAAATTTTGCAAAA-TATGA
* * *
91428 CCCGAAAGATTTTTCCTCAACTTTTTTTTGGCTAAAATACTCATAAAAAATATATAATTTAACTC
641 ACCGAAAGATTTTTCCTCAA---TTTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACAC
* * * *
91493 CAAAAAGA-TTGAAGGGCTTTTGACGCTTCTAATATCGTTTTTCCTATATTTCCAAATTAATTTC
703 CAAAAAGATTTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCATATTTTTCCAAATTAATTTC
* * * * * *
91557 TAATTAAATCGAAACAAGATACAGATGCTCATAAAAACATATCCATAAATCCAATGCGTCTGAGA
768 TAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATACAATGTGGCTGAGA
* * *
91622 TTTGATTAGATGAATATAGATATTTCAAGTAGTTTCGGA-GCCAAAAATCATGCAAAATTGAG-C
833 TTTGATTAGATGAATATAGATATTTCAAGGAGTCTC-GACGCCAAAAATCATGCAAAACTGAGCC
* * * * *
91685 TGGGTCCCCGGAACGGGTTATTAGCCAAAAACCGTGATGGTTAGTTAGTACACGATTTCTGA-TA
897 AGGG-CCCCGAAACGCGTTTTTAGCAAAAAACCGTGA----TA--TAGTACACGATTTC-GACTA
* ** *
91749 AAATTTTGCAAAAATTGACATGAAAGA-TTTCTCCTCAA
954 AAATTTTGCAAAAAATGACCCGAAAAAGTTT-TCCTCAA
* * * * * * *
91787 ATTTTGGCTAAATTACTCATAAAAATATATAATTCAATGCCAAAAAGATTGGAGG-CCTTTCATG
1 TTTTTAGCTAAAATACTCATAAAAATATATAATTTAAAGCCAAAAAGATTGGAGGACTTTTCACG
* * * * *
91851 CTTTTAATATCGTATTTCTTATTTTTTCTAAATTAATTTCTAAATAAATCAAAACAAGTTTCATA
66 CTTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCATA
91916 TGCTCGTAAAAACAAATTCTTAAATCCAAT
131 TGCTCGTAAAAACAAATTCTTAAATCCAAT
91946 TAATGTTGTT
Statistics
Matches: 2586, Mismatches: 399, Indels: 288
0.79 0.12 0.09
Matches are distributed among these distances:
969 3 0.00
970 34 0.01
971 77 0.03
972 26 0.01
973 64 0.02
974 12 0.00
975 2 0.00
976 58 0.02
977 15 0.01
978 32 0.01
979 1 0.00
980 77 0.03
981 2 0.00
982 1 0.00
983 4 0.00
984 9 0.00
985 146 0.06
986 126 0.05
987 203 0.08
988 92 0.04
989 64 0.02
992 8 0.00
993 106 0.04
994 541 0.21
995 26 0.01
996 51 0.02
997 18 0.01
998 172 0.07
999 65 0.03
1000 32 0.01
1001 214 0.08
1002 52 0.02
1003 129 0.05
1004 2 0.00
1005 19 0.01
1006 74 0.03
1007 26 0.01
1008 2 0.00
1009 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (991 bp):
TTTTTAGCTAAAATACTCATAAAAATATATAATTTAAAGCCAAAAAGATTGGAGGACTTTTCACG
CTTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATCGAAACAAGATTCATA
TGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCCGAAATTTGATTAGATGAATATAGATATCT
CAAGGAGTCTCGGCATGAAAAATCATGCAAAACTAACCCGGGCCCCAGAACGCTTTTTAGCCAAA
AACCGTGATGATTATTACACGATTTCGACTAAAATTTTGAAAAAATAGACTCAAAAAAATATTTC
CTCAATTTTTGGATAAAATACTCATAAAATATATATAATTCAACGCCAAAAAGATTGAAGGACTT
TTCACGCTTTTAATAACATTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
TTCAGATGCTCGCAAAAACAAATCCTTAAATCCAATGTAGCTGAGATTTGATTAGATGAATATAG
ATATTCAAGGAGTCTTGACGGCAAAAATCATGCAAAACTGAGCCGGGCCCTAAACGCTTTTTTAG
CCAAAAACTCGTGATGGTTATTACACGATTTCGGCTAAAATTTTGCAAAATATGAACCGAAAGAT
TTTTCCTCAATTTTTTGGCTAAAATACTCATAAAAAATATATAATTCAACACCAAAAAGATTTGA
AGGACTTTTCACGCTTCTAATATCGTTTTTCATATTTTTCCAAATTAATTTCTAATTAAATCGAA
ACAAGATTCAGATGCTCATAAAAACAAATCCTTAAATACAATGTGGCTGAGATTTGATTAGATGA
ATATAGATATTTCAAGGAGTCTCGACGCCAAAAATCATGCAAAACTGAGCCAGGGCCCCGAAACG
CGTTTTTAGCAAAAAACCGTGATATAGTACACGATTTCGACTAAAATTTTGCAAAAAATGACCCG
AAAAAGTTTTCCTCAA
Found at i:92353 original size:15 final size:16
Alignment explanation
Indices: 92335--92364 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
92325 ATAAATAATA
92335 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
92350 ATATTATAATCTAAA
1 ATATTATAATCTAAA
92365 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:96765 original size:23 final size:22
Alignment explanation
Indices: 96750--96878 Score: 73
Period size: 22 Copynumber: 5.8 Consensus size: 22
96740 TAAATACTTT
*
96750 TATGAAATTTTGATAACTACCC
1 TATGAAATTTTGATAAATACCC
* ** **
96772 TATTAAATTTTGATAACCATGC
1 TATGAAATTTTGATAAATACCC
*
96794 TATGAAAATTTTTGATAATTA-CC
1 TATG-AAA-TTTTGATAAATACCC
* * * *
96817 TATGAAATTGTGATATATTCCA
1 TATGAAATTTTGATAAATACCC
* * *
96839 TATGAAAACTTTGATAACCTA-AC
1 TATG-AAATTTTGATAA-ATACCC
*
96862 TATGAAATTTTAATAAA
1 TATGAAATTTTGATAAA
96879 CCTTCTTATG
Statistics
Matches: 79, Mismatches: 23, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
21 8 0.10
22 39 0.49
23 21 0.27
24 11 0.14
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAAATACCC
Found at i:96916 original size:22 final size:21
Alignment explanation
Indices: 96750--96919 Score: 71
Period size: 22 Copynumber: 7.6 Consensus size: 21
96740 TAAATACTTT
*
96750 TATGAAATTTTGATAA-CTACCC
1 TATGAAATTTTG-TAACCT-TCC
* * *
96772 TATTAAATTTTGATAACCATGC
1 TATGAAATTTTG-TAACCTTCC
96794 TATGAAAATTTTTGATAA--TTACC
1 TATG-AAA-TTTTG-TAACCTT-CC
*
96817 TATGAAATTGTGATATA--TTCC
1 TATGAAATTTTG-TA-ACCTTCC
* **
96838 ATATGAAAACTTTGATAACCTAAC
1 -TATG-AAATTTTG-TAACCTTCC
* *
96862 TATGAAATTTTAATAAACCTTCT
1 TATGAAATTTT-GT-AACCTTCC
96885 TATGAAATTTTGTAACCTTCCC
1 TATGAAATTTTGTAACCTT-CC
*
96907 TATGAGATTTTGT
1 TATGAAATTTTGT
96920 TAATCTCCCT
Statistics
Matches: 116, Mismatches: 20, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
21 15 0.13
22 52 0.45
23 38 0.33
24 11 0.09
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.41
Consensus pattern (21 bp):
TATGAAATTTTGTAACCTTCC
Found at i:97634 original size:21 final size:22
Alignment explanation
Indices: 97595--97645 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
97585 AATAATTTGG
97595 ATATAGTAGTTGGAAATATATAT
1 ATATA-TAGTTGGAAATATATAT
* *
97618 A-ATATAGTTTGATATATATAT
1 ATATATAGTTGGAAATATATAT
97639 ATATATA
1 ATATATA
97646 TAACATTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 16 0.64
22 8 0.32
23 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (22 bp):
ATATATAGTTGGAAATATATAT
Found at i:105372 original size:326 final size:326
Alignment explanation
Indices: 104477--105548 Score: 1242
Period size: 321 Copynumber: 3.3 Consensus size: 326
104467 GAGTAAAATT
* * * *
104477 TTGAATTATATATTTTTTCTGAGTTTTGTGGCCAAAAATTGAGGAAAAATTTTTCGGGTCAGTTT
1 TTGAATTATATATTTTTTCTGAGTATTGTAGCAAAAAATTGAAGAAAAATTTTTCGGGTCAGTTT
* * *
104542 TTGCAAAATTTTAGCCGATATCGTGTACTAACTCTCACGGTTTTTGGCTAAAAATGCGTTTCGAG
66 TTGCAAAATTTTAGCCGAAATC-TGTACTAA---TCACGGTTTTTGGCTAAAAACGCGTTTCGGG
* * * * *
104607 GCCTCGACTCGGTTTTGCATGGTTTTTTGCATAAAGACTCCTTGGAATATCTACATTCATCTAAC
127 GCCTCGACTCAGTTTTGCATGGTTTTTGGAATAAAGACTCCTTGAAATATCTATATTCATCTAAC
* * * * *
104672 CAAATATCAGCCACAATGGATTTAAGGATTTGTTTTTACAAGCATCTGAATTTTGTTTCGATTTA
192 CAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTA
** * * *
104737 ATTAGAAATAAATTCAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCAATCTTT
257 ATTAGAAATAAATTCGGAAAAAATGGAAAAACGATATTAGAAACGT-GAAAACCCTTCAATTTTT
* *
104802 CTGGAG
321 TTGGCG
* * *
104808 TTGAATTATATATATTTTCTGAGTATTGTAGCAAAAAAATGGAGGAAAAATTTTTCGGGTCAG--
1 TTGAATTATATATTTTTTCTGAGTATTGTAGC-AAAAAATTGAAGAAAAATTTTTCGGGTCAGTT
* *
104871 --T------TTTTAGCCGAAATCGTGTATTACATCACGGTTTTTGGGCTAAAAACGCGTTCCGGG
65 TTTGCAAAATTTTAGCCGAAATC-TGTACTA-ATCACGGTTTTT-GGCTAAAAACGCGTTTCGGG
* * * * * * *
104928 ACCACGACTCAGTTTTGCATGATTTTTGGAAGATAGACTCCTTGAAATATCAATATTCATCAAAC
127 GCCTCGACTCAGTTTTGCATGGTTTTTGGAATAAAGACTCCTTGAAATATCTATATTCATCTAAC
** * ** *
104993 CAAATCTCAGCCACATTGGAGATAAGGATTTGTTTTTATGAAAATCCGAATCTTGTTTAGATTTA
192 CAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTA
* * *
105058 ATTAGAAATGAATTCGGAAAAAATGGAAAAACAATATTAGAAACGTGAAAAGCCCATCAATTATT
257 ATTAGAAATAAATTCGGAAAAAATGGAAAAACGATATTAGAAACGTGAAAA-CCCTTCAATT-TT
105123 TTTGGCG
320 TTTGGCG
* * *
105130 TTGAA-TATATATTTTTTCTGAGTATTGT-GTCAAATATTTGAAGAAAAACTTTTCGGGTCAGTT
1 TTGAATTATATATTTTTTCTGAGTATTGTAG-CAAAAAATTGAAGAAAAATTTTTCGGGTCAGTT
* * * *
105193 TTTGCAAAATTTTAGACGAAAAT-TGT-GTAATCACGGTTTTTTGCTAAAAACGCGTTTCGGGGT
65 TTTGCAAAATTTTAGCCG-AAATCTGTACTAATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGC
* * * *
105256 CTCGACTCATTTTTGAATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATAGTCATCTAACCA
129 CTCGACTCAGTTTTGCATGGTTTTTGGAATAAAGACTCCTTGAAATATCTATATTCATCTAACCA
* * ** * *
105321 AATCTCAGTCC-TATTTGATTTAAGGATTTCCTTTTACGAGCATCTGAATCTTGTTTTGTTTTAA
194 AATCTCAG-CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAA
* *
105385 TTACAAATAAATTCGGAAAAAAATGGAAAAACGATATTA-AAAGCGTGAAAAACCGTTCAATTTT
258 TTAGAAATAAATTCGG-AAAAAATGGAAAAACGATATTAGAAA-CGTG-AAAACCCTTCAATTTT
*
105449 TTTGGCA
320 TTTGGCG
* ** *
105456 TTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG-AGGGAAATGTTTCGGGTCAGTTT
1 TTGAATTATATATTTTTTCTGAGTATTGTAGCAAAAAATTGAAGAAAAATTTTTCGGGTCAGTTT
105520 TTGCAAAATTTTAGCCGAAATCGTGTACT
66 TTGCAAAATTTTAGCCGAAATC-TGTACT
105549 CATGTCTATT
Statistics
Matches: 624, Mismatches: 91, Indels: 55
0.81 0.12 0.07
Matches are distributed among these distances:
320 42 0.07
321 195 0.31
322 32 0.05
323 1 0.00
324 1 0.00
325 4 0.01
326 187 0.30
327 81 0.13
328 9 0.01
329 3 0.00
330 8 0.01
331 33 0.05
332 28 0.04
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (326 bp):
TTGAATTATATATTTTTTCTGAGTATTGTAGCAAAAAATTGAAGAAAAATTTTTCGGGTCAGTTT
TTGCAAAATTTTAGCCGAAATCTGTACTAATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCT
CGACTCAGTTTTGCATGGTTTTTGGAATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAA
TCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTA
GAAATAAATTCGGAAAAAATGGAAAAACGATATTAGAAACGTGAAAACCCTTCAATTTTTTTGGC
G
Found at i:106454 original size:329 final size:332
Alignment explanation
Indices: 105974--107712 Score: 1998
Period size: 329 Copynumber: 5.3 Consensus size: 332
105964 TCGGGTCAGT
* * * *
105974 TTTTAG-CGAAAATCGTGTACAAACCATTACTGTTTTTGGGCTAAAAACGCGTTCCGG-GACCAC
1 TTTTAGCCG-AAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGGAG-CCTC
* * * * * *
106037 GGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCAAACTAAAT
64 GACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCAAACCAAAT
* * * *
106102 CTCAGCCACATTGGAGATAAGGATTT-TTTTTATGAACATCCGAATCTTGTTTAGATTTAATTAG
129 CTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAG
* * *
106166 AAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCATCAATTTTTTTCGG
194 AAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTT-GG
* *
106231 CGTTGAA-TATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTCGGGTCAGT
258 CGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAATTTGAGGAAAAACTTTTCGGGTCAGT
106295 TTTTGCAAAA
323 TTTTGCAAAA
** * *
106305 TTTTAGCCGAAATTTTGTACTAACCATCACAGTTTTT-GGCTAAAAACGCGTTCCGGAGTCTCGA
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGGAGCCTCGA
* * * *
106369 -TCCA-TTTTGCATGGTTTTTGGTATAAAGACTCCTTCAAATATCTATAGTCATCTAACCAAATC
66 CT-CAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATC
** * * * * * *
106432 TCAATCACATTTGATTTAAGGATTTCTTTTTACGAGTATCTGAATCTTGTTTTGATTTAATTACA
130 TCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGA
* *
106497 AATAAATTCGAAAAAAATGGAAAAACGATATTCA-AAGCGTGAAAAACCGTTCAA-TTTTTTGGC
195 AATAAATTCGAAAAAAATGGAAAAACGATATT-AGAAGCGTGAAAAGCCCTTCAATTTTTTTGGC
* * * * *
106560 ATTGAATTATATATTTTTTATGAGTATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTCAGTT
259 GTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAATTTGAGGAAAAACTTTTCGGGTCAGTT
106625 TTTGCAAAA
324 TTTGCAAAA
* * * *
106634 TTTTAGCCGATATCGTGTACTAACTC-TCACGATTTTT-GGCTAAAAATGCGTTTC-GAGGCCTC
1 TTTTAGCCGAAATCGTGTACTAAC-CATCACGGTTTTTGGGCTAAAAACGCGTTCCGGA-GCCTC
* * * * * *
106696 GACTAAGTTTTTCATGGTTTTTCGCATAAAGACTCCTTGGAATATCTATATTCATCTAACCTAAT
64 GACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCAAACCAAAT
* * * * *
106761 ATCAGCCACACTGGATATAAGGATTTGTTTTT-CGAGCATCTGGATTTTGTTTCGATTTAATTAG
129 CTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAG
* * * * *
106825 AAATAAATTC-AAAAAAATTGAAAAACGATATTAGAACCTTGGAAAAG-CCTTCAATCTTTATGG
194 AAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGT-GAAAAGCCCTTCAATTTTTTTGG
* * * * **
106888 AGTTGAATTATTTATATTTTCTGAGTATTGT-TGC-AAAATATGGAGGAAAATTTTTTCGGGTCA
258 CGTTGAATTATATATTTTTTCTGAGTATTGTGT-CAAAAAT-TTGAGGAAAAACTTTTCGGGTCA
106951 G----T-C----
321 GTTTTTGCAAAA
* *
106954 -TTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGG-GACCACG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGGAG-CCTCG
* * * * * * *
107017 GCTCAGTTTTGAATGATTTTTGGCAGATAA-ACTCCCTGAAATATCAATATTCAACAAACCAAAT
65 ACTCAGTTTTGCATGGTTTTTGGCATA-AAGACTCCTTGAAATATCTATATTCATCAAACCAAAT
* * *
107081 CTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGATTAGATTTAATTAG
129 CTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAG
* * * * *
107146 AAATGAATTCGGAAAAAAATGGAAAACCGAAATTAGAAGCGTGAAAAGCCCGTCAATGTTTTTGG
194 AAATAAATTC-GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGG
* * * *
107211 CGTTGAA-TATATATTTTTTTTGAGTATTGTGTCAAATATTTGAGGAAAAACTTTTTGGGTCAAT
258 CGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAATTTGAGGAAAAACTTTTCGGGTCAGT
107275 TTTTGCAAAA
323 TTTTGCAAAA
* ** * * * * * * * *
107285 TTTTAGCTGAAATTATGCACTAGCGATTACGGTTTTTGGGCTAAAAATGTGTTTCGGAGTCTCGA
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGGAGCCTCGA
* *
107350 CTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATATTCATCAAACAAAATCT
66 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCT
** * * * * * *
107415 CAATCACATTTGATTTAAGGATATGTTTTTACGAGCATCTGAATCTTGTTTTGATTCAATTACAA
131 CAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
* * *
107480 ATAAATTCGAAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACCGTTCAATTTTTTTGGC
196 ATAAATTCG--AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGC
* *
107545 ATTGAATTATATATTTTTTCTGAGTATTGT-TGCAAAAAATTGAGGAAAAA-TATTTCGGGTCAG
259 GTTGAATTATATATTTTTTCTGAGTATTGTGT-CAAAAATTTGAGGAAAAACT-TTTCGGGTCAG
107608 TTTTTGCAAAA
322 TTTTTGCAAAA
* * * *
107619 TTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTT-GGCTAAAAATGCGTTTC-GAGGCTTCG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGGA-GCCTCG
*
107682 ACTCAGTTTTGCATGGTCTTTGGCATAAAGA
65 ACTCAGTTTTGCATGGTTTTTGGCATAAAGA
107713 AAATTCAAAA
Statistics
Matches: 1175, Mismatches: 189, Indels: 86
0.81 0.13 0.06
Matches are distributed among these distances:
318 1 0.00
319 32 0.03
320 97 0.08
321 38 0.03
322 46 0.04
323 49 0.04
324 1 0.00
325 1 0.00
326 1 0.00
327 2 0.00
328 45 0.04
329 287 0.24
330 182 0.15
331 34 0.03
332 167 0.14
333 104 0.09
334 88 0.07
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36
Consensus pattern (332 bp):
TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTCCGGAGCCTCGA
CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCT
CAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
ATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGT
TGAATTATATATTTTTTCTGAGTATTGTGTCAAAAATTTGAGGAAAAACTTTTCGGGTCAGTTTT
TGCAAAA
Found at i:108347 original size:331 final size:330
Alignment explanation
Indices: 107840--114885 Score: 6033
Period size: 331 Copynumber: 21.5 Consensus size: 330
107830 TCGGGTCAGT
* * * * * *
107840 TTTTAGCCGAAATCGTGTACTAACCATTAAGGTTTTAGGGCTAAAAACGCGTTCCGGGACCACGG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT-TGGCTAAAAACGCGTTTCGGGGCCTC-G
* * * * * *
107905 A-TAAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCAAACCAAATC
64 ACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
** * * *
107969 TCAGCCACATTGGAGATAAGGATTTGTTTTTATGAACATCCGAATCTTGTTTAGATTTAATTAGA
129 TCAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGA
* * * * *
108034 AATGAATTCGGAAAAAATGGAAAAACAATATTAGAAGCATGAAAAGCCCATCAATTTTTTTTGGC
193 AATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA-TTTTTTTGGC
* * * *
108099 GTTGAA-TACATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTCGGGTAAGTT
257 GTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTT
108163 TTTGCAAAA
322 TTTGCAAAA
* * * * * *
108172 TTTTAGCCGAAATTGTGTATTAACCATCACTGTTTTCGGCTAAAAACGCGTTCCGGGGTCTCGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
* * * * *
108237 CCATTTTTGCATGGTTTTTGGTATAAAGACTCCTTTAAATATCTATAGTCATCTAACCAAATCTC
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* * * *
108302 AGTCCCATTTGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTACAAA
131 AG-CCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAA
* * * * * *
108367 TAAATTCGAAAAGAATGGTAAAACGATATCA-AAGCGTGAAAAACCCTTCAATATTTTTGGCATT
195 TAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGTT
* * * *
108431 GAATTAAATATTTTTTTCTGAGTATTGTGGCAAAAAATTGATGAAAAATTTTTCGGGTCAGTTTT
260 GAATTATATA-TTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTTTT
108496 TGCAAAA
324 TGCAAAA
* * * *
108503 TTTTAGCCGATATCGTGTACTAACTC-TCACGGTTTTTGGCTAAAAATGTGTTTCGAGGCCTCGA
1 TTTTAGCCGAAATCGTGTACTAAC-CATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGA
* * * * *
108567 CTCAGTTTTTCATGGTTTATCGCATAAAGACTCCTTGGAATATCTATATTCATCTAACCAAATAT
65 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * * *
108632 CAGCCACACTGGATTTAAGGATTTATCTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAA
130 CAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
* * * * * *
108697 ATAAATTCAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAA-CCCTTCAATCTTTCTGGAG
194 ATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGT-GAAAAGCCCTTCAATTTTTTTGGCG
* ** * *
108761 CTGAATTATATATAATTTCTGAGTATTGTAG-CAAAAAATGGAGGAAAAA-TTTTCCGGGTCAG-
258 TTGAATTATATATTTTTTCTGAGTATTGT-GTCAAAAAATTGAAGAAAAACTTTT-CGGGTCAGT
108823 ---T------
321 TTTTGCAAAA
* *** * *** * * *
108824 TTTTAGCCGAAATCGTGTAGGCTAA--A-AACGCGTTCCGGGAC-CACGGCTCAGTTT---TGCA
1 TTTTAGCCGAAATCGTGTA--CTAACCATCACG-GTTTTTGG-CTAAAAACGC-GTTTCGGGGCC
* * * ** * * * *
108882 T-GA-T---TTTTGGAAGATATACTCCTTGAAATACAA-A-T-ATTCATCAA-A-CCA-AATC-T
61 TCGACTCAGTTTTGCATGGT-T--T--TTGGCATA-AAGACTCCTTGA--AATATCTATATTCAT
* * * * * *
108935 C-AGCCACAT-T--G---A--AGA--TAAGGATTTGTTTTTATGAACATCCGAATCTTGTTTAGA
118 CTAACCAAATCTCAGCCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGA
* * * *
108989 TTTAATTAGAAATGAATTCGGAAAAAATGGAAAAACAATATTAGAAGCGTGAAAAGCCCATCAAT
183 TTTAATTAGAAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAAT
* *
109054 TTTTTTGGCGTTGAA-TATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTC
248 TTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTC
*
109118 GGGTTAGTTTTTGCAAAA
313 GGGTCAGTTTTTGCAAAA
* * *
109136 TTTTAGCCGAAATTGTGTACTAACCATCACGGTTTTAT-GCTAAAAACGCGTTACGGGGTCTCGA
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT-TGGCTAAAAACGCGTTTCGGGGCCTCGA
* * * *
109200 CTCATTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATAGTCATCTAACCAAACCT
65 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * * *
109265 CAGTCCCATTTGTTTTAAGGATTTCTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTACAA
130 CAG-CCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
* ** * * *
109330 ATAAATTCGAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAATCGTTCAATATTTTTGGCAT
194 ATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGT
* * * * * * *
109395 TGAATTATATATTTTTTCTGAATATTTTGGCAAAAAATTGAGGAAAAAATTTTCGTGTCAGATTT
259 TGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTTTT
*
109460 TGCTAAA
324 TGCAAAA
* * * *
109467 TTTTAACCTAAATCGTG--------ATCACGGTTTTTGGGCTAAAAACGCG-TTCTGGGACCACG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-GGCTAAAAACGCGTTTC-GGGGCCTCG
* * * * * * * *
109523 GCTTAGTTTTGCATGATTTTTGGAAGATAGACTCCTTGAAATATCAATATTCATCAAACCAAATC
64 ACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
* * * * * * * ***
109588 TCAGCCACATTGGATATAAGGATTTGTTTCTATGACCATCCGAAGCTTGATTAGATTT-AGCCGA
129 TCAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGA
**** * **** ** ** * * * *
109652 AA-AAATTTTCG-GGTCAGTTTTTAGCCG--A--A-AATTGTG--TA---CATCAAGGTTTTTAG
193 AATAAA--TTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA-TTTTTTTG
* * * * ** * * * *
109705 CCGAAAATTG--TGTACATCACGGTTTTTAGCCGAAAATCGTGACAAAAAATTGAGGAAAAATTT
255 GCG----TTGAAT-TATAT-A---TTTTT-TCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTT
* *
109768 TTCGGGTCAGTTTTTAACCGAAAC
310 TTCGGGTCAGTTTTT--GC-AAAA
** ** * * * ** *** * * **
109792 TCGT-GACAAAAAATTGAGGAAAAATTTTTC-GGGTCAGTTTTTGC--AAAA----TTT--TAGC
1 TTTTAG-C-CGAAATCGTGTACTAA-CCATCACGGT---TTTTGGCTAAAAACGCGTTTCGGGGC
*** * * * * **
109847 CGAAAATC-GTGTACTAT-CACGGTTTTTGGC-TAAA-AATGCGTTTCGAGGCCTCGA-CTCAGT
60 CTCGACTCAGT-T--T-TGCATGGTTTTTGGCATAAAGACT-C-CTT-GA--AAT--ATCT-A--
* ** * * * * ** *
109907 TTTTTTTTTAACCAAATATCAGCTACACTGGATTTAAGGATTT-TTTTTACGAAAATCTGAATTT
111 TATTCATCTAACCAAATCTCAGC-CCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCT
* *
109971 TGTTTCGATTTAATTAGAAATAAATTC-AAAAAAATGGAAAAACGATATTAGAA-CATTGGAAAA
175 TGTTTAGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGC-GT-GAAAA
* * * * * * *
110034 -CCCCTCAATCTCTTTGGAGTTGAATTATATATATTTTT-TGAGTATTGTAG-CACAAAATGGAG
238 GCCCTTCAATTTTTTTGGCGTTGAATTATATAT-TTTTTCTGAGTATTGT-GTCAAAAAATTGAA
* *
110096 GAAAAAATTTTTGGGTCAG----T------
301 GAAAAACTTTTCGGGTCAGTTTTTGCAAAA
* * * * ** *
110116 TTTTAGCCGAAAATCGTGTACATTA-CATCACGGATTTTGGGCTAAAAACGAGTTCCGGGAACAC
1 TTTTAGCCG-AAATCGTGTAC-TAACCATCACGG-TTTTTGGCTAAAAACGCGTTTCGGGGCCTC
* * * *
110180 -AGCTCAGTTTTGCATGGTTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCAAACCAAA
63 GA-CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAA
* * *
110244 TCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGATTTAATTA
127 TCTCAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTA
* *
110309 GAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG-CCTGTCAATTTTTTTG
191 GAAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCT-TCAATTTTTTTG
* * * * * * *
110373 GTGTTGAA-TATATATTATTTCTGAGTATTGTGTCAAATATTTGATGAAAAACTTTTTGAGTCAG
255 GCGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAG
*
110437 TTTTTGCATAA
320 TTTTTGCAAAA
* * *
110448 TTTTAGCCGAAATTGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCTCAAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
* * * ** *
110513 TCAGTTTTGCTTGGTTTTTGGTATAAAGACTCCTTGAAATATCTATATTCATCAAAGAAAATCTG
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* * * * * *
110578 AGTCACATTTGATTTAAGGATATGTTTTTACGAGCATATGAATCTTGTTTTGATTTAATTACAAA
131 AG-CCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAA
* * *
110643 TAAATTCGAAAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCCATATTTTTGG
195 TAAATTCG----AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGG
* * * * *
110708 CATTGAATTATATATTTTTTCTTAGTATTGTGAC-AAAAATTGAGGAAAAATTTTTCGGGTCAGT
256 CGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGT
110772 TTTTGCAAAA
321 TTTTGCAAAA
* * * * * *
110782 TTTTAGTCGAAATCGTGTACGTTACTATCACGGTTTTTGACTAAAAATGCGTTTCGAGGCCTCGA
1 TTTTAGCCGAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGA
* * * * *
110847 CTCAATTTTGCATGGTTTTTGGCATAAAGACTCCGTGGAATATCTATATTCTTCTAACCAAATAT
65 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * * *
110912 CAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTATTTCGATTTAATTAGAA
130 CAGC-CCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
* ** * * * * * *
110977 ATAAATTCAAAAAAAAATTAAAAAACGATATTACAACCTTGGAAAA-CCCTTCAATCTTTTAGGA
194 ATAAATTC-GAAAAAAATGGAAAAACGATATTAGAAGCGT-GAAAAGCCCTTCAATTTTTTTGGC
* * * * * * * *
111041 GTTTAATTATATATATTTACTGAGTATTGTAG-CACAAAATGGACGAAAAAATTTTCCGGTCAGT
257 GTTGAATTATATATTTTTTCTGAGTATTGT-GTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGT
111105 TTTT-----A
321 TTTTGCAAAA
* * * * * *
111110 ----A-CCGAAAATCGTGTACGT--TCATCACGGATTTTAGGCTAAAAACGCGTTCCAGGACCAC
1 TTTTAGCCG-AAATCGTGTAC-TAACCATCACGG-TTTTTGGCTAAAAACGCGTTTCGGGGCCTC
* * * * * * * * * *
111168 GGCTCAGTTTTGCATGATTTTTTGTAGATAGACTCCTTTAAATATCAATATTCACCAAACCAAAT
63 GACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAAT
* * * *
111233 CTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATATTGTTTAGATTTAATTAG
128 CTCAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAG
* * * *
111298 AAATGAATTCGGAAAAAATGAAAAAACGATATTAGAAGCATGAAAAG-CCTGTCAATTTTTTTGG
192 AAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCT-TCAATTTTTTTGG
* * * * *
111362 TGTTGAA-TATATATTTTTTATGAGTATTGTATCAAATATTTGAAGAAAAACATTTT-GGGTCAG
256 CGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAAC-TTTTCGGGTCAG
*
111425 TTTTTGAAAAA
320 TTTTTGCAAAA
* * *
111436 TTTTTGCCGAAATTGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCTCGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
** * *
111501 TCAGTTTTGCATGGTTTTTGTTATAAAGACTCCTTGAAATATCTATATTCATCAAACAAAATCTC
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* * * * * * *
111566 AGTCACGTTTGATTTAAGGATATATTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTATAAA
131 AG-CCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAA
* * * * *
111631 TAAATTTGAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACCCTTCAATATTTTTGGCAT
195 TAAATTCG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGT
* * * *
111696 TGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGAAAAATTTTTCGGGTCAGTTTT
259 TGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTTTT
111761 TGCAAAA
324 TGCAAAA
* * *
111768 TTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAATGCGTTTCGAGGCCTCGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
* * *
111833 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGGAATATCTATATTCATCTAACC-AATATC
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* * * * *
111897 AGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTATTTCGATTTAATTAGAAA
131 AGC-CCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAA
* ** * * * * *
111962 TAAATTCAAAAAAAATTAAAAAAACGATATTAGAACCTTGGAAAA-CCCTTCAATGTTTTAGGAG
195 TAAATTCGAAAAAAA-TGGAAAAACGATATTAGAAGCGT-GAAAAGCCCTTCAATTTTTTTGGCG
* * * * * * * * *
112026 TTTAATTATATATATTTTATGAGTATTG-GAGCACAAAATCGAGGAAAAAATTTTTGGGTCAG--
258 TTGAATTATATATTTTTTCTGAGTATTGTG-TCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTT
112088 --T------
322 TTTGCAAAA
* * * * * *
112089 TTTTAGCCGAAAATCGTGTACATTA-CATCACGGATTTTGGGCTAAAAACGAGTTCCGGGACCAC
1 TTTTAGCCG-AAATCGTGTAC-TAACCATCACGG-TTTTTGGCTAAAAACGCGTTTCGGGGCCTC
* * *
112153 GGCTCAGTTTTGCATGGTTTTTGGCA-AATAGACTCCTTGAAATATC-ATATTCATCAAACCAAC
63 GACTCAGTTTTGCATGGTTTTTGGCATAA-AGACTCCTTGAAATATCTATATTCATCTAACCAAA
* * * *
112216 TCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAAATTTAATTA
127 TCTCAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTA
* * * **
112281 GAAATGAATTCGGAAAAAATGGAAAAAAGATATTAGAAGCGTGAAAAGCCGGTCAATTTTTTTGG
191 GAAATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGG
* * * * * *
112346 TGTTGAA-TATATATTTTTTCTGAGTATTGTGTCAAATATTTGATGAAAAACTTTTTGAGTCAGT
256 CGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGT
112410 TTTTGCAAAA
321 TTTTGCAAAA
* *
112420 TTTTAGCCGAAAT--TG--CGT-ACCATCACTGTTTTTGGCTAAAAACGCGTTTCGGGGTCTCGA
1 TTTTAGCCGAAATCGTGTAC-TAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGA
* * * *
112480 CTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAGATATCTATATTCATCAAACAAAATCT
65 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * * * *
112545 CAGTCACATTTGATTTAAGGATATGTTTTTACGAGCATTTGAATCTTGTTTTGATTTAATTACAA
130 CAG-CCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
* * *
112610 ATAAATTCGAAAAAAAAATGGAAAAACGATATTAGAGGCGTGAAAAACCCTTCCA-TTTTTTGGC
194 ATAAATTCG--AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGC
* * * * *
112674 ATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTG-AGGAAAATTTTTCGGGTCAGTT
257 GTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTT
112738 TTTGCAAAA
322 TTTGCAAAA
* * *
112747 TTTTAGCCGATATCGTGTACTAACTC-TCACGGTTTTTGGCTAAAAATGCGTTTCGAGGCCTCGA
1 TTTTAGCCGAAATCGTGTACTAAC-CATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGA
* * * * *
112811 CTCAGTTTTTCATGGTTTTTCGCATAAAGTCTCCTTGGAATATCTATATTCATCTAACCAAATAT
65 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * * *
112876 CAGCCACACTGGACTTAAGGATTTATTTTT-CTGAGCATCTGAATTTTGTTTCGATTTAATTAGA
130 CAGCC-CATTGGATTTAAGGATTTGTTTTTAC-GAGCATCTGAATCTTGTTTAGATTTAATTAGA
* * * * *
112940 AATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAA-CCCTTCAATCTTTCTGG
193 AATAAATTC-GAAAAAAATGGAAAAACGATATTAGAAGCGT-GAAAAGCCCTTCAATTTTTTTGG
* * * *
113004 AGTTGAATTATATATATTTTCTGAGTATTGTAG-CAAAAAA-TGGAGGAAAACTTTTTCGGGTCA
256 CGTTGAATTATATATTTTTTCTGAGTATTGT-GTCAAAAAATTGAAGAAAAAC-TTTTCGGGTCA
113067 G----T------
319 GTTTTTGCAAAA
* * * * * * *
113069 TTTTAG-CGAAAATCGTGTACAAACCATCACGGATTTTGCGCTAAAAACGTGTTCCAGGACCACG
1 TTTTAGCCG-AAATCGTGTACTAACCATCACGGTTTTTG-GCTAAAAACGCGTTTCGGGGCCTCG
* * * ** * * *
113133 GCTCAGTTTTGCATGATTTTTGGCAGATTGACTCCTTGACATATCAATATTCATCAAACCAAATC
64 ACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATC
* * * * *
113198 CCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGATTTAATTAGT
129 TCAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGA
* * * *
113263 AATGAATTCG------GTGGAAAAACGTTATTAGAAGCGTGAAAAG-CCTGTCAATTTTTTTGGT
193 AATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCT-TCAATTTTTTTGGC
* * * * * *
113321 ATTGAA-TATATATTTTTTCTGAGTATTGTGTCAAATATTTGCAGAAAAACTTTCCGGATCAGTT
257 GTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTT
113385 TTTGCAAAA
322 TTTGCAAAA
* * * * * *
113394 TTTTTGCTGAAATTGTGTACTAACCATCACGATTTTTGGTTAAAAACGCGTTTCGGGGTCTCGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
* * *
113459 TCATTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATAGTCATCTAACCAAATCTC
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* ** * * * *
113524 AGTCACATTTAATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTGTTTGGATCTAATTACAAA
131 AG-CCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAA
*
113589 TAAATTCGAAAAAAATGGAAAAACGATATTA-ATAGCGTGAAAAGCCCTTCAATTTTTTTGGCAT
195 TAAATTCGAAAAAAATGGAAAAACGATATTAGA-AGCGTGAAAAGCCCTTCAATTTTTTTGGCGT
* * *
113653 TGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAATTG-AGAAAAAATTTTCGGGTCAGATTT
259 TGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTTTT
113716 TGCAAAA
324 TGCAAAA
* ** * * *
113723 TTTTAGCCGAAATCGGGTACTAATTATCACGGTTTTTAGCTAAAAATGCGTTTCGAGGCCTCGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
* *** *
113788 TCAGTTTTGCATGGTTTCTGGCATAAAGACTCCGAAAAATATCTATATTCATCTAACCAAATATC
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* * *
113853 AGCCACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAA
131 AGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAA
* * * * * * * *
113918 T--TTTCAAAAAAAATGGAAAAATGATATTAGAACCTTGGAAAGCCCTTCAATCTTTTTGGAGTT
195 TAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGTT
* * *
113981 GAATTATATATTTTTTCTTAGTATTGTAG-CAAAAAAATGGAAGAAAAA-TTTT----TCAG-GT
260 GAATTATATATTTTTTCTGAGTATTGT-GTC-AAAAAATTGAAGAAAAACTTTTCGGGTCAGTTT
* *
114039 CTG----T
323 TTGCAAAA
* ** * * * * *
114043 TTTTAGTCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAATACATTCCGGGACCACGG
1 TTTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTTGGCTAAAAACGCGTTTCGGGGCCTCGA
* * * * *
114108 CTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCAAACCAAATCT
65 CTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCT
* * * *
114173 CAGCCACATTGGATATAAGGATTTATTTTTATGAACATCTGAATCTTGTTTAGATTTAATTAGAA
130 CAGCC-CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAA
* * * *
114238 ATGAATTCG-GAAAAATGGAAAAACGCTATTAGAAGCGTGAAAAGCCCGTCAATTTTTTTGGCGT
194 ATAAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGT
* * *
114302 TGAA-TATATATTTTTTCTGAGTATGGTGTCAAATATTTGAAGAAAAACTTTTCGGGTCAGTTTT
259 TGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTTTT
*
114366 TGTAAAA
324 TGCAAAA
* * * * **
114373 GTTTTAGCTGAAATTGTGTA-TAAACCATCACGG--TTTGACTAAAAACGCGTTTTGGGATCTCG
1 -TTTTAGCCGAAATCGTGTACT-AACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCG
* * * *
114435 ACTTATTTTTGCATGGTTTTTGCCTTTTTGGTATAAAGACTCCTTGAAATATCTATAGTCATCTA
64 ACTCAGTTTTGCAT-G-----G--TTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTA
* * * * * * *
114500 ACCAAATCTCAATCACATTTGATTTAAGTATTTCTTTTTACGAGCATCGGAATCTTGTTTTGATT
121 ACCAAATCTC-AGCCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATT
* * * *
114565 TAATTACAAATTAATTCGAAAAAAAAATTGGAAAAACGATATTAAAAGCGTGAAAAACCCTTCAA
185 TAATTAGAAATAAATTCG--AAAAAAA-TGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAA
* * * *
114630 TTTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGGCAAAAAATT-AAGGAAAAATTTT
247 TTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAA-GAAAAACTTT
* *
114694 TTGGGTCAGTTTTTGCGAAA
311 TCGGGTCAGTTTTTGCAAAA
* * ** * *
114714 TTTTAGCCGAAATCGTGTACTAACTATCACAGTTTTTGGCTAAAATTGCGTTTCGAGGCTTCGAC
1 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
* * * * *
114779 TCAGTTTTGCATGGTTTTTAGCATAAAGACTCCGTGGAATATCTATTTTCATCTAACCAAATATC
66 TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
* * *
114844 AGCTACACTGGATTTAAGGATTTGTTTTTAGGAGCATCTGAA
131 AGC-CCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
114886 AGAATTAAAA
Statistics
Matches: 5353, Mismatches: 1034, Indels: 652
0.76 0.15 0.09
Matches are distributed among these distances:
301 1 0.00
302 47 0.01
303 99 0.02
305 2 0.00
306 1 0.00
307 1 0.00
310 4 0.00
311 5 0.00
312 26 0.00
313 10 0.00
314 31 0.01
315 52 0.01
316 57 0.01
317 13 0.00
318 16 0.00
319 25 0.00
320 49 0.01
321 346 0.06
322 349 0.07
323 485 0.09
324 288 0.05
325 114 0.02
326 103 0.02
327 137 0.03
328 131 0.02
329 229 0.04
330 558 0.10
331 1016 0.19
332 324 0.06
333 44 0.01
334 186 0.03
335 184 0.03
336 137 0.03
337 77 0.01
338 6 0.00
339 9 0.00
340 77 0.01
341 64 0.01
342 38 0.01
343 1 0.00
344 1 0.00
345 5 0.00
346 5 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (330 bp):
TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGAC
TCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTC
AGCCCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGAAAT
AAATTCGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATTTTTTTGGCGTTG
AATTATATATTTTTTCTGAGTATTGTGTCAAAAAATTGAAGAAAAACTTTTCGGGTCAGTTTTTG
CAAAA
Found at i:109710 original size:29 final size:29
Alignment explanation
Indices: 109668--109741 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
109658 TTTCGGGTCA
109668 GTTTTTAGCCGAAAATTGTGTACATCAAG
1 GTTTTTAGCCGAAAATTGTGTACATCAAG
*
109697 GTTTTTAGCCGAAAATTGTGTACATCACG
1 GTTTTTAGCCGAAAATTGTGTACATCAAG
109726 GTTTTTAGCCGAAAAT
1 GTTTTTAGCCGAAAAT
109742 CGTGACAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (29 bp):
GTTTTTAGCCGAAAATTGTGTACATCAAG
Found at i:109789 original size:51 final size:51
Alignment explanation
Indices: 109726--109833 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 51
109716 GTACATCACG
*
109726 GTTTTTAGCCGAAAATCGTGACAAAAAATTGAGGAAAAATTTTTCGGGTCA
1 GTTTTTAACCGAAAATCGTGACAAAAAATTGAGGAAAAATTTTTCGGGTCA
*
109777 GTTTTTAACCGAAACTCGTGACAAAAAATTGAGGAAAAATTTTTCGGGTCA
1 GTTTTTAACCGAAAATCGTGACAAAAAATTGAGGAAAAATTTTTCGGGTCA
109828 GTTTTT
1 GTTTTT
109834 GCAAAATTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (51 bp):
GTTTTTAACCGAAAATCGTGACAAAAAATTGAGGAAAAATTTTTCGGGTCA
Found at i:112976 original size:980 final size:982
Alignment explanation
Indices: 109915--114885 Score: 7721
Period size: 980 Copynumber: 5.1 Consensus size: 982
109905 GTTTTTTTTT
**
109915 TAACCAAATATCAGCTACACTGGATTTAAGGATTT-TTTTTACGAAAATCTGAATTTTGTTTCGA
1 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGA
* *
109979 TTTAATTAGAAATAAATTC--AAAAAAATGGAAAAACGATATTAGAACATTGGAAAACCCCTCAA
66 TTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCAA
*
110042 TCTCTTTGGAGTTGAATTATATATATTTTTTGAGTATTGTAGCACAAAATGGAGGAAAAAATTTT
131 TCT-TTTGGAGTTGAATTATATATATTTTATGAGTATTGTAGCACAAAATGGAGGAAAAAATTTT
110107 TGGGTCAGTTTTTAGCCGAAAATCGTGTACATTACATCACGGATTTTGGGCTAAAAACGAGTTCC
195 TGGGTCAGTTTTTAGCCGAAAATCGTGTACATTACATCACGGATTTTGGGCTAAAAACGAGTTCC
* * *
110172 GGGAACACAGCTCAGTTTTGCATGGTTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCA
260 GGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCA
110237 AACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGAT
325 AACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGAT
110302 TTAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGTCAATT
390 TTAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGTCAATT
* *
110367 TTTTTGGTGTTGAATATATATTATTTCTGAGTATTGTGTCAAATATTTGATGAAAAACTTTTTGA
455 TTTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTTGA
*
110432 GTCAGTTTTTGCATAATTTTAGCCGAAATTGTGTACTAACCATCACGGTTTTTGGCTAAAAACGC
520 GTCAGTTTTTGCAAAATTTTAGCCGAAATTGTG-A-TAACCATCAC-GTTTTTGGCTAAAAACGC
* *
110497 GTTTCGGGGTCTCAACTCAGTTTTGCTTGGTTTTTGGTATAAAGACTCCTTGAAATATCTATATT
582 GTTTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATATT
* * * *
110562 CATCAAAGAAAATCTGAGTCACATTTGATTTAAGGATATGTTTTTACGAGCATATGAATCTTGTT
647 CATCAAACAAAATCTCAGTCACATTTGATTTAAGGATATCTTTTTACGAGCATCTGAATCTTGTT
*
110627 TTGATTTAATTACAAATAAATTCGAAAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAAC
712 TTGATTTAATTACAAATAAATTCG--AAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAAC
*
110692 CCTTCCATATTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGAC-AAAAATTGAGGAAA
775 CCTTCAAT-TTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGAAA
* *
110756 AATTTTTCGGGTCAGTTTTTGCAAAATTTTAGTCGAAATCGTGTACGTTACTATCACGGTTTTTG
839 AATTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTAC-TAACTATCACGGTTTTTG
* *
110821 ACTAAAAATGCGTTTCGAGGCCTCGACTCAATTTTGCATGGTTTTTGGCATAAAGACTCCGTGGA
903 GCTAAAAATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGGA
*
110886 ATATCTATATTCTTC
968 ATATCTATATTCATC
*
110901 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTATTTCGA
1 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGA
** *
110966 TTTAATTAGAAATAAATTCAAAAAAAAATTAAAAAACGATATTACAACCTTGGAAAACCCTTCAA
66 TTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCAA
* *
111031 TCTTTTAGGAGTTTAATTATATATA-TTTACTGAGTATTGTAGCACAAAATGGACGAAAAAATTT
131 TCTTTT-GGAGTTGAATTATATATATTTTA-TGAGTATTGTAGCACAAAATGGAGGAAAAAATTT
** * * * *
111095 TCCGGTCAGTTTTTAACCGAAAATCGTGTACGTT-CATCACGGATTTTAGGCTAAAAACGCGTTC
194 TTGGGTCAGTTTTTAGCCGAAAATCGTGTACATTACATCACGGATTTTGGGCTAAAAACGAGTTC
* * * * *
111159 CAGGACCACGGCTCAGTTTTGCATGATTTTTTGTAGATAGACTCCTTTAAATATCAATATTCACC
259 CGGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATC
*
111224 AAACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATATTGTTTAGA
324 AAACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGA
* *
111289 TTTAATTAGAAATGAATTCGGAAAAAATGAAAAAACGATATTAGAAGCATGAAAAGCCTGTCAAT
389 TTTAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGTCAAT
* * *
111354 TTTTTTGGTGTTGAATATATATTTTTTATGAGTATTGTATCAAATATTTGAAGAAAAACATTTTG
454 TTTTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTTG
* * *
111419 GGTCAGTTTTTGAAAAATTTTTGCCGAAATTGTGTACTAACCATCACGGTTTTTGGCTAAAAACG
519 AGTCAGTTTTTGCAAAATTTTAGCCGAAATTGTG-A-TAACCATCAC-GTTTTTGGCTAAAAACG
*
111484 CGTTTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGTTATAAAGACTCCTTGAAATATCTATAT
581 CGTTTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATAT
* *
111549 TCATCAAACAAAATCTCAGTCACGTTTGATTTAAGGATATATTTTTACGAGCATCTGAATCTTGT
646 TCATCAAACAAAATCTCAGTCACATTTGATTTAAGGATATCTTTTTACGAGCATCTGAATCTTGT
* *
111614 TTTGATTTAATTATAAATAAATTTG-AAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACC
711 TTTGATTTAATTACAAATAAATTCGAAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACC
111678 CTTCAATATTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGAAAA
776 CTTCAAT-TTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGAAAA
111743 ATTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGC
840 ATTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGC
111808 TAAAAATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGGAAT
905 TAAAAATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGGAAT
111873 ATCTATATTCATC
970 ATCTATATTCATC
*
111886 TAACC-AATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTATTTCGA
1 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGA
* **
111950 TTTAATTAGAAATAAATTCAAAAAAAATTAAAAAAACGATATTAGAACCTTGGAAAACCCTTCAA
66 TTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCAA
* * * *
112015 TGTTTTAGGAGTTTAATTATATATATTTTATGAGTATTGGAGCACAAAATCGAGGAAAAAATTTT
131 TCTTTT-GGAGTTGAATTATATATATTTTATGAGTATTGTAGCACAAAATGGAGGAAAAAATTTT
112080 TGGGTCAGTTTTTAGCCGAAAATCGTGTACATTACATCACGGATTTTGGGCTAAAAACGAGTTCC
195 TGGGTCAGTTTTTAGCCGAAAATCGTGTACATTACATCACGGATTTTGGGCTAAAAACGAGTTCC
* *
112145 GGGACCACGGCTCAGTTTTGCATGGTTTTTGGCAAATAGACTCCTTGAAATATC-ATATTCATCA
260 GGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCA
* *
112209 AACCAACTCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAAAT
325 AACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGAT
* *
112274 TTAATTAGAAATGAATTCGGAAAAAATGGAAAAAAGATATTAGAAGCGTGAAAAGCCGGTCAATT
390 TTAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGTCAATT
*
112339 TTTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGATGAAAAACTTTTTGA
455 TTTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTTGA
*
112404 GTCAGTTTTTGCAAAATTTTAGCCGAAATTGCG-T-ACCATCACTGTTTTTGGCTAAAAACGCGT
520 GTCAGTTTTTGCAAAATTTTAGCCGAAATTGTGATAACCATCAC-GTTTTTGGCTAAAAACGCGT
*
112467 TTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAGATATCTATATTCA
584 TTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATATTCA
* *
112532 TCAAACAAAATCTCAGTCACATTTGATTTAAGGATATGTTTTTACGAGCATTTGAATCTTGTTTT
649 TCAAACAAAATCTCAGTCACATTTGATTTAAGGATATCTTTTTACGAGCATCTGAATCTTGTTTT
* *
112597 GATTTAATTACAAATAAATTCGAAAAAAAAATGGAAAAACGATATTAGAGGCGTGAAAAACCCTT
714 GATTTAATTACAAATAAATTCGAAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACCCTT
*
112662 CCATTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGG-AAAATTT
779 CAATTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGAAAAATTT
* *
112726 TTCGGGTCAGTTTTTGCAAAATTTTAGCCGATATCGTGTACTAACTCTCACGGTTTTTGGCTAAA
844 TTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAA
* * * *
112791 AATGCGTTTCGAGGCCTCGACTCAGTTTTTCATGGTTTTTCGCATAAAGTCTCCTTGGAATATCT
909 AATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGGAATATCT
112856 ATATTCATC
974 ATATTCATC
* * *
112865 TAACCAAATATCAGCCACACTGGACTTAAGGATTTATTTTT-CTGAGCATCTGAATTTTGTTTCG
1 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTAC-GAGCATCTGAATTTTGTTTCG
112929 ATTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCA
65 ATTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCA
* * *
112994 ATCTTTCTGGAGTTGAATTATATATATTTTCTGAGTATTGTAGCAAAAAATGGAGG-AAAACTTT
130 ATCTTT-TGGAGTTGAATTATATATATTTTATGAGTATTGTAGCACAAAATGGAGGAAAAAATTT
* * *
113058 TTCGGGTCAGTTTTTAG-CGAAAATCGTGTACA-AACCATCACGGATTTTGCGCTAAAAACGTGT
194 TT-GGGTCAGTTTTTAGCCGAAAATCGTGTACATTA-CATCACGGATTTTGGGCTAAAAACGAGT
* * *
113121 TCCAGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATTGACTCCTTGACATATCAATATTCA
257 TCCGGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCA
*
113186 TCAAACCAAATCCCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTA
322 TCAAACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTA
* *
113251 GATTTAATTAGTAATGAATTCGG------TGGAAAAACGTTATTAGAAGCGTGAAAAGCCTGTCA
387 GATTTAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGTCA
* * *
113310 ATTTTTTTGGTATTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGCAGAAAAACTTTC
452 ATTTTTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTT
* * * *
113375 CG-GATCAGTTTTTGCAAAATTTTTGCTGAAATTGTGTACTAACCATCACGATTTTTGGTTAAAA
517 TGAG-TCAGTTTTTGCAAAATTTTAGCCGAAATTGTG-A-TAACCATCACG-TTTTTGGCTAAAA
*
113439 ACGCGTTTCGGGGTCTCGACTCATTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTA
578 ACGCGTTTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTA
* * * * *
113504 TAGTCATCTAACCAAATCTCAGTCACATTTAATTTAAGGATTTCTTTTTACGAGCATCTGAATCT
643 TATTCATCAAACAAAATCTCAGTCACATTTGATTTAAGGATATCTTTTTACGAGCATCTGAATCT
* * *
113569 TGTTTGGATCTAATTACAAATAAATTCG--AAAAAAATGGAAAAACGATATTAATAGCGTGAAAA
708 TGTTTTGATTTAATTACAAATAAATTCGAAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAA
* * *
113632 GCCCTTCAATTTTTTTGGCATTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAATTGA-GA
773 ACCCTTCAA-TTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGA
* * * *
113695 AAAAATTTTCGGGTCAGATTTTGCAAAATTTTAGCCGAAATCGGGTACTAATTATCACGGTTTTT
837 AAAATTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTT
* * ***
113760 AGCTAAAAATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTCTGGCATAAAGACTCCGAAA
902 GGCTAAAAATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGG
113825 AATATCTATATTCATC
967 AATATCTATATTCATC
*
113841 TAACCAAATATCAGCCACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGA
1 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGA
* * *
113906 TTTAATTAGAAAT--TTTC-AAAAAAAATGGAAAAATGATATTAGAACCTTGGAAAGCCCTTCAA
66 TTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCAA
* * * * *
113968 TCTTTTTGGAGTTGAATTATATATTTTTTCTTAGTATTGTAGCAAAAAAATGGAAG-AAAAATTT
131 TC-TTTTGGAGTTGAATTATATATATTTTATGAGTATTGTAGC-ACAAAATGGAGGAAAAAATTT
* * * * * *
114032 TTCAGGTCTGTTTTTAGTCG-AAATCGTGTAC-TAACCATCACGGTTTTTTGGCTAAAAATAC-A
194 TT-GGGTCAGTTTTTAGCCGAAAATCGTGTACATTA-CATCACGGATTTTGGGCT-AAAA-ACGA
114094 -TTCCGGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATT
255 GTTCCGGGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATT
*
114158 CATCAAACCAAATCTCAGCCACATTGGATATAAGGATTTATTTTTATGAACATCTGAATCTTGTT
320 CATCAAACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTT
* *
114223 TAGATTTAATTAGAAATGAATTCGG-AAAAATGGAAAAACGCTATTAGAAGCGTGAAAAGCCCGT
385 TAGATTTAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGT
* *
114287 CAATTTTTTTGGCGTTGAATATATATTTTTTCTGAGTATGGTGTCAAATATTTGAAGAAAAACTT
450 CAATTTTTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTT
* * * * * *
114352 TTCGGGTCAGTTTTTGTAAAAGTTTTAGCTGAAATTGTGTATAAACCATCACG-GTTTGACTAAA
515 TTTGAGTCAGTTTTTGCAAAA-TTTTAGCCGAAATTGTG-AT-AACCATCACGTTTTTGGCTAAA
* * * *
114416 AACGCGTTTTGGGATCTCGACTTATTTTTGCATGGTTTTTGCCTTTTTGGTATAAAGACTCCTTG
577 AACGCGTTTCGGGGTCTCGACTCAGTTTTGCAT-G-----G--TTTTTGGTATAAAGACTCCTTG
* * * * * *
114481 AAATATCTATAGTCATCTAACCAAATCTCAATCACATTTGATTTAAGTATTTCTTTTTACGAGCA
634 AAATATCTATATTCATCAAACAAAATCTCAGTCACATTTGATTTAAGGATATCTTTTTACGAGCA
* *
114546 TCGGAATCTTGTTTTGATTTAATTACAAATTAATTCGAAAAAAAAATTGGAAAAACGATATTAAA
699 TCTGAATCTTGTTTTGATTTAATTACAAATAAATTCGAAAAAAAAA-TGGAAAAACGATATTAAA
*
114611 AGCGTGAAAAACCCTTCAATTTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGGCAAA
763 AGCGTGAAAAACCCTTCAA-TTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAA
* * *
114676 AAATTAAGGAAAAATTTTTTGGGTCAGTTTTTGCGAAATTTTAGCCGAAATCGTGTACTAACTAT
827 AAATTGAGGAAAAATTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTAT
* * * *
114741 CACAGTTTTTGGCTAAAATTGCGTTTCGAGGCTTCGACTCAGTTTTGCATGGTTTTTAGCATAAA
892 CACGGTTTTTGGCTAAAAATGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAA
*
114806 GACTCCGTGGAATATCTATTTTCATC
957 GACTCCGTGGAATATCTATATTCATC
*
114832 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTAGGAGCATCTGAA
1 TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA
114886 AGAATTAAAA
Statistics
Matches: 3692, Mismatches: 242, Indels: 97
0.92 0.06 0.02
Matches are distributed among these distances:
973 81 0.02
974 340 0.09
975 7 0.00
976 255 0.07
977 43 0.01
978 206 0.06
979 360 0.10
980 522 0.14
981 45 0.01
984 429 0.12
985 266 0.07
986 211 0.06
987 45 0.01
988 491 0.13
989 199 0.05
990 8 0.00
991 184 0.05
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (982 bp):
TAACCAAATATCAGCTACACTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGA
TTTAATTAGAAATAAATTCAAAAAAAAATGGAAAAACGATATTAGAACCTTGGAAAACCCTTCAA
TCTTTTGGAGTTGAATTATATATATTTTATGAGTATTGTAGCACAAAATGGAGGAAAAAATTTTT
GGGTCAGTTTTTAGCCGAAAATCGTGTACATTACATCACGGATTTTGGGCTAAAAACGAGTTCCG
GGACCACGGCTCAGTTTTGCATGATTTTTGGCAGATAGACTCCTTGAAATATCAATATTCATCAA
ACCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTATGAACATCTGAATCTTGTTTAGATT
TAATTAGAAATGAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTGTCAATTT
TTTTGGTGTTGAATATATATTTTTTCTGAGTATTGTGTCAAATATTTGAAGAAAAACTTTTTGAG
TCAGTTTTTGCAAAATTTTAGCCGAAATTGTGATAACCATCACGTTTTTGGCTAAAAACGCGTTT
CGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGTATAAAGACTCCTTGAAATATCTATATTCATC
AAACAAAATCTCAGTCACATTTGATTTAAGGATATCTTTTTACGAGCATCTGAATCTTGTTTTGA
TTTAATTACAAATAAATTCGAAAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACCCTTCA
ATTTTTTGGCATTGAATTATATATTTTTTCTTAGTATTGTGACAAAAAATTGAGGAAAAATTTTT
CGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAA
TGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCGTGGAATATCTAT
ATTCATC
Found at i:120620 original size:29 final size:30
Alignment explanation
Indices: 120587--120664 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
120577 CTTCAAATTG
*
120587 CAAGTTCAAGGGGCAAAATGTCCAAAAT-TA
1 CAAGTTCAAGGGGCAAAACGT-CAAAATATA
* * *
120617 -AAGTTTAGGGGGCAAAACGTTAAAATCATA
1 CAAGTTCAAGGGGCAAAACGTCAAAAT-ATA
120647 CAAGTTCAAGGGGCAAAA
1 CAAGTTCAAGGGGCAAAA
120665 ATGGCATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 5 0.13
29 17 0.44
30 2 0.05
31 15 0.38
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (30 bp):
CAAGTTCAAGGGGCAAAACGTCAAAATATA
Found at i:127007 original size:45 final size:45
Alignment explanation
Indices: 126940--127027 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
126930 CCTCTTTCTT
* *
126940 ACGATACATGGGAGGCTCACGATATATAGAAGGCGCAAGATCGTC
1 ACGATACATGGGAGGCTCACGATACATAGAAGGAGCAAGATCGTC
* * * *
126985 ACGATCCATGGGAGGCTTACGATCCATAGAAGGATCAAGATCG
1 ACGATACATGGGAGGCTCACGATACATAGAAGGAGCAAGATCG
127028 ATACGTATGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.18
Consensus pattern (45 bp):
ACGATACATGGGAGGCTCACGATACATAGAAGGAGCAAGATCGTC
Found at i:142070 original size:7 final size:7
Alignment explanation
Indices: 142058--142094 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
142048 GGAAAAGAGT
142058 ATATTAA
1 ATATTAA
142065 ATATTAA
1 ATATTAA
142072 ATATTAA
1 ATATTAA
*
142079 ATATTAC
1 ATATTAA
*
142086 ATATAAA
1 ATATTAA
142093 AT
1 AT
142095 TTTCCAAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (7 bp):
ATATTAA
Found at i:145331 original size:17 final size:15
Alignment explanation
Indices: 145306--145343 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
145296 TGAGTGGCTT
145306 GCAAGAGAGAGAATC
1 GCAAGAGAGAGAATC
145321 GCAAGAGAGAGAATC
1 GCAAGAGAGAGAATC
*
145336 GCGAGAGA
1 GCAAGAGA
145344 AAGAGACCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.45, C:0.13, G:0.37, T:0.05
Consensus pattern (15 bp):
GCAAGAGAGAGAATC
Done.