Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016404.1 Corchorus olitorius cultivar O-4 contig16437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 27674
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32


Found at i:8734 original size:7 final size:7

Alignment explanation


    Indices: 8722--8754  Score: 66
    Period size: 7  Copynumber: 4.7  Consensus size: 7

       8712 TTTCTGTGGC

                   
       8722 TGAGGAG
          1 TGAGGAG

                   
       8729 TGAGGAG
          1 TGAGGAG

                   
       8736 TGAGGAG
          1 TGAGGAG

                   
       8743 TGAGGAG
          1 TGAGGAG

                 
       8750 TGAGG
          1 TGAGG

       8755 GAGGGAGGAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   26  1.00

ACGTcount: A:0.27, C:0.00, G:0.58, T:0.15


Consensus pattern (7 bp):   
TGAGGAG

Found at i:23184 original size:18 final size:18

Alignment explanation


    Indices: 23161--23197  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

      23151 ACTCTGCTTC

                     *        
      23161 TTCTTCGCCTCCTCCGCT
          1 TTCTTCGCCACCTCCGCT

                      *       
      23179 TTCTTCGCCAGCTCCGCT
          1 TTCTTCGCCACCTCCGCT

             
      23197 T
          1 T

      23198 GCTCCTCCTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.03, C:0.46, G:0.14, T:0.38


Consensus pattern (18 bp):   
TTCTTCGCCACCTCCGCT
Done.