Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016406.1 Corchorus olitorius cultivar O-4 contig16439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32731
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Found at i:6048 original size:3 final size:3
Alignment explanation
Indices: 5998--6039 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
5988 TAATGATTCA
*
5998 AAC AAC AA- ACAC AAC AAC AGC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC A-AC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
6040 CTCAACAACG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 1 0.03
3 33 0.94
4 1 0.03
ACGTcount: A:0.64, C:0.33, G:0.02, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:10636 original size:3 final size:3
Alignment explanation
Indices: 10628--10656 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10618 GGAGGGAAGG
10628 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
10657 GTCAAATAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:20893 original size:50 final size:49
Alignment explanation
Indices: 20814--20911 Score: 160
Period size: 50 Copynumber: 2.0 Consensus size: 49
20804 TACAACACTT
* *
20814 CCATATGAAGTTCATCCATTATTTTTTATAATGTTGATGCTTTTTTCCTA
1 CCATATGAAGTTCATCCATTATTTCTTATAATGCTGATG-TTTTTTCCTA
*
20864 CCATATGAAGTTCATCCATTATTTCTTATAATGCTGCTGTTTTTTCCT
1 CCATATGAAGTTCATCCATTATTTCTTATAATGCTGATGTTTTTTCCT
20912 CATTCTTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 9 0.20
50 36 0.80
ACGTcount: A:0.22, C:0.18, G:0.10, T:0.49
Consensus pattern (49 bp):
CCATATGAAGTTCATCCATTATTTCTTATAATGCTGATGTTTTTTCCTA
Found at i:23297 original size:19 final size:19
Alignment explanation
Indices: 23265--23303 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
23255 TTTAAAACTA
*
23265 TGTATATATCTTGTAAAGT
1 TGTATATATATTGTAAAGT
*
23284 TGTATGTATATTGTAAAGT
1 TGTATATATATTGTAAAGT
23303 T
1 T
23304 TTGCATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.49
Consensus pattern (19 bp):
TGTATATATATTGTAAAGT
Found at i:28600 original size:19 final size:19
Alignment explanation
Indices: 28578--28617 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
28568 TTGTCAATCA
28578 ACAATTTATTAATTTGATC
1 ACAATTTATTAATTTGATC
28597 ACAATTTATTAATTTGATC
1 ACAATTTATTAATTTGATC
28616 AC
1 AC
28618 TTGCAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (19 bp):
ACAATTTATTAATTTGATC
Found at i:28692 original size:5 final size:5
Alignment explanation
Indices: 28684--28740 Score: 86
Period size: 5 Copynumber: 12.2 Consensus size: 5
28674 TTATTTTATG
28684 TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA --TTA TCTTA TCTTA
1 TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA TCTTA
28732 -C-TA TCTTA T
1 TCTTA TCTTA T
28741 TATATATATA
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
3 5 0.10
4 2 0.04
5 41 0.85
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (5 bp):
TCTTA
Found at i:28704 original size:15 final size:14
Alignment explanation
Indices: 28684--28740 Score: 82
Period size: 13 Copynumber: 4.1 Consensus size: 14
28674 TTATTTTATG
28684 TCTTATCTTATCTTA
1 TCTTA-CTTATCTTA
28699 TCTTATCTTATCTTA
1 TCTTA-CTTATCTTA
28714 TCTTA-TTATCTTA
1 TCTTACTTATCTTA
28727 TCTTAC-TATCTTA
1 TCTTACTTATCTTA
28740 T
1 T
28741 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
13 21 0.51
15 20 0.49
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (14 bp):
TCTTACTTATCTTA
Found at i:28754 original size:21 final size:21
Alignment explanation
Indices: 28712--28756 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
28702 TATCTTATCT
* *
28712 TATCTTATTATCTTATCTTAC
1 TATCTTATTATATTATCATAC
28733 TATCTTATTATATATAT-ATAC
1 TATCTTATTATAT-TATCATAC
28754 TAT
1 TAT
28757 ATAAAATCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (21 bp):
TATCTTATTATATTATCATAC
Found at i:30363 original size:333 final size:329
Alignment explanation
Indices: 29418--30524 Score: 1423
Period size: 333 Copynumber: 3.3 Consensus size: 329
29408 AACAACATTA
* * * * * *
29418 ATTGGATTTAAGAATTTGTTTTTACAAGCATATGAAACTTGTTTTGATTTATTTAGAAATTAAGT
1 ATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* * * * * *
29483 TAGAAAAAATAAGAGATACGATATTAAAAGCGTGAAAAACCCTCCAATTTTTTTGACGTTGAATT
66 TAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCCTCCAATTTTTTTGGCGTTAAATT
* *
29548 ATATATTTTTATGAGTAATTTAGCCAAAAATTGAGGAGAAATCTTTCATGTCAATTTTTGCAAAA
131 ATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGA-AAATCTTTCAGGTCAATTTTTGCAAAA
* ** * **
29613 TTTTATCTGAAATCGTGTACTAACTAACCATCACGGTTTTTGGCTAATAACGCGTTATGGGGACC
195 TTTTAGCCAAAATCGTG---T-ACTAACCATCACGGTTTTTGGCTAAAAACGCGTT-TCAGGACC
* * * * *
29678 CAGCTCAATTTTACATGATTTTAGGCTCC-GGAACTACTTGAAATATCTATATTCATCTAATCAA
255 CCGCTCAGTTTTACATGATTTTAGGCGCCAAG-ACTTCTTGAAATATCTATATTCATCTAATCAA
*
29742 ATCTCAGACAC
319 ATCTCAGCCAC
* * * *
29753 ATTGGATTTATGGATATGTTTTTACGAGCATCTGAATCTTGTTTCGATTTTATTAGAAATTAATT
1 ATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* * * * * *
29818 T-GTAAAAATATGAAAAACGATATTAGAAGCGTCAAAAGCCCTTCAATATTTTTGGAGTTAAATT
66 TAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCCTCCAATTTTTTTGGCGTTAAATT
* *
29882 ATATATTTTTATGAGTATTTTAGCCAAAAAATTGAGGGAATATCTTTCAGGTCAATTTTTACAAA
131 ATATATTTTTATGAGTATTTTAGCC-AAAAATTGA-GGAAAATCTTTCAGGTCAATTTTTGCAAA
* ** * * *
29947 ATTTTAGCCAAAATCGTGTAATAACCATCATAGTTTTTGGCTAAAAAAGCG-TTCAGGGGCCACG
194 ATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCA-GGACCCCG
* * *
30011 ACTCAGTTTTACATGATTTTGGGCGCCAAGACTTCTTGAGATATCCATATTCATCTAATCAAATC
258 -CTCAGTTTTACATGATTTTAGGCGCCAAGACTTCTTGAAATATCTATATTCATCTAATCAAATC
*
30076 CCAGCCAC
322 TCAGCCAC
* * *
30084 ATTGGATTTAAAAATTTGGTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
1 ATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
*
30149 TAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATT
66 TAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCCTCCAATTTTTTTGGCGTTAAATT
* * * *
30214 ATATATATTTTATAAGTATTTTATCCAAAAATTGAGGAAAAGTTTTTC-GAGTCATTTTTTTGCA
131 ATATAT-TTTTATGAGTATTTTAGCCAAAAATTGAGGAAAA-TCTTTCAG-GTCA-ATTTTTGCA
* *
30278 AAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTATGGCTAAAAACGCGTTTCAAGACCCC
192 AAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGACCCC
* * *
30343 GTCTCAGTTTTGCATGATTTTTGGCGCCAAGAC-TCATTGAAATATCTATATTCATCTAATAAAA
257 G-CTCAGTTTTACATGATTTTAGGCGCCAAGACTTC-TTGAAATATCTATATTCATCTAATCAAA
*
30407 TCTTAGCCAC
320 TCTCAGCCAC
* * *
30417 ATTGCATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATAAGAAATTAATT
1 ATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* *
30482 CAGAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGCCCT
66 TAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCCT
30525 TCAGTCTTTT
Statistics
Matches: 667, Mismatches: 93, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
329 1 0.00
330 6 0.01
331 153 0.23
332 84 0.13
333 238 0.36
334 79 0.12
335 103 0.15
336 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (329 bp):
ATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
TAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCCTCCAATTTTTTTGGCGTTAAATT
ATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAATCTTTCAGGTCAATTTTTGCAAAAT
TTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCAGGACCCCGCTC
AGTTTTACATGATTTTAGGCGCCAAGACTTCTTGAAATATCTATATTCATCTAATCAAATCTCAG
CCAC
Found at i:30635 original size:100 final size:100
Alignment explanation
Indices: 30442--30643 Score: 253
Period size: 100 Copynumber: 2.0 Consensus size: 100
30432 TTGTTTTTAC
* * * *
30442 GAGCATCTGAATCTTGTTTCGATTTAATAAGAAATTAATTCAGAAAAAATATGAAAAACGATATT
1 GAGCATATGAAACTTGTTTCGATTCAATAAGAAATTAATTCAGAAAAAATAAGAAAAACGATATT
* * * *
30507 AAAAGTGTGAAAAGCCCTTCAGTCTTTTTAGCGTT
66 AAAAGCGTGAAAAACCCTCCAATCTTTTTAGCGTT
* * * *
30542 GAGCATATGAAACTTGTTTTGATTCATTTAGAAATTAAGTT-AGAAAAAATAAGAAATACGATAT
1 GAGCATATGAAACTTGTTTCGATTCAATAAGAAATTAA-TTCAGAAAAAATAAGAAAAACGATAT
* * *
30606 TAAAAGCGTGAAAAATCCTCCAATTTTTTTGGCGTT
65 TAAAAGCGTGAAAAACCCTCCAATCTTTTTAGCGTT
30642 GA
1 GA
30644 ATTATATATT
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
100 84 0.98
101 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (100 bp):
GAGCATATGAAACTTGTTTCGATTCAATAAGAAATTAATTCAGAAAAAATAAGAAAAACGATATT
AAAAGCGTGAAAAACCCTCCAATCTTTTTAGCGTT
Found at i:31764 original size:332 final size:330
Alignment explanation
Indices: 30542--32728 Score: 2509
Period size: 333 Copynumber: 6.6 Consensus size: 330
30532 TTTTAGCGTT
* * * * * * * *
30542 GAGCATATGAAACTTGTTTTGATTCATTTAGAAATTAAGTTAGAAAAAATAAGAAATACGATATT
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAG-AAAAATATGAAAAACGATATT
* * *
30607 AAAAGCGTGAAAAATCCTCCAATTTTTTTGGCGTTGAATTATATAT-TTTTATGAGTATTTTAGC
65 AAAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATGAGTATTTTATC
* * * * * * * *
30671 CAAAAATTGAGGAGAAATCTATC-ATGTCAATTTTTGCAAAATTTTACCCGATATTGTGTATTAA
130 CAAAAATTGAGGAAAAATTTTTCGA-GTCATTTTTTGCAAAATTTTAGCCAAAATCGTG---T-A
* * *
30735 CTAACCATCACGGTTTTTGGCTAATAACGCGTTCCGGGGACCCAGCTCAATTTTACATGATTTTT
190 CTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGACCC-GCTCAGTTTTACATGATTTTT
* * * * * * * * *
30800 GGCTCCGAAACTACTTGAAATATCTATATTCATCTAATCAAACCTCAGACAAATTGGATTTATGG
254 GGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCATTTAAGA
*
30865 ATATGTTTTTAC
319 ATTTGTTTTTAC
* * * *
30877 GAGCATCTAAATCTTGTTTCGATTTTATTAGAAATTAATTTGGAAAAATAGGAAAAACGATATTA
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTA
* * * * * * * *
30942 GAAGCGTCAAAAGCCCTTCAATATTTTTGGAGTTAAATTATATATTTTTTATGAGTATTTTAGCC
66 AAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATGAGTATTTTATCC
* * * * * * *
31007 AAAAATTGAGGAAATATCTTTC-AGGTAAATTTTTACAAAGTTTTAGCCAAAATCGTGTAATAAC
131 AAAAATTGAGGAAAAATTTTTCGA-GTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAC
* * * * * *
31071 CATCACAGTTTTTGGCTAAAAAAGC-ATTCAGGGGACACGGCTCAGTTTTACATGATATCTGGCG
195 CATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGAC-CCGCTCAGTTTTACATGATTTTTGGCG
* * * * * * *
31135 CCAAGACTCCTTGAGATATCCA-ATTTCATATAATCAAATCCCAGCCACATTGGATTTAAAAATT
258 CCGAGACTCCTTGAAATATCTATA-TTCATCTAATCAAATCTCAGCCACATTGCATTTAAGAATT
31199 TGTTTTTAC
322 TGTTTTTAC
* * *
31208 GAGTATCTGAATCTTGTTTCGATATAATTAGAAATTAATTTAGAAAAATATGAAATACGATATTA
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTA
*
31273 AAAGCGTGAAAAGTCCTCCAATTTTTGTTGGCGTTAAATTATATATATTTTATAAGTATTTTATC
66 AAAGCGTGAAAAGTCCTCCAATTTTT-TTGGCGTTAAATTATATATATTTTATGAGTATTTTATC
* * *
31338 CAATAATTGAGGAAAAATTTTTCGAGTCATTGTTTTGCACACTTTTAGCCAAAATCGTGTACTAA
130 CAAAAATTGAGGAAAAATTTTTCGAGTCATT-TTTTGCAAAATTTTAGCCAAAATCGTGTACTAA
* * * *
31403 CCATCACGGTTTTTTGCTAAAAACGTGTTTC-GAGACACCGTCTCAGTTTTGCATGATTTTTGGC
194 CCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGAC-CCG-CTCAGTTTTACATGATTTTTGGC
** * *
31467 ATCGAGACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAGCCACATTGCATTTAAGAATT
257 GCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCATTTAAGAATT
*
31532 TGCTTTTAC
322 TGTTTTTAC
* * ***
31541 GAGCATCTGAATCTTATTTCGTTTTAATTAGAAATTAATTTAGTCTAATATGAAAAACGATATTA
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTA
* * * *
31606 AAAGCGCGAAAAGTCCTCCAATTTTTTTGGCTTTAAATTATATATATTTTATAAATATTTTATCC
66 AAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATGAGTATTTTATCC
*
31671 AAAAATTGAGGAAAAATTTTTCGAGTCATTTTCTTGCAAAATTTTAGCCAAAATCGTGTACCAAC
131 AAAAATTGAGGAAAAATTTTTCGAGTCATTTT-TTGCAAAATTTTAGCCAAAATCGTGTACTAAC
* * * *
31736 CATCACGGTTTTTGGCTAAAAACGTGTTTC-GAGACCCCGTCTCAGCTTTGCATGATTTTTGGCG
195 CATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGA-CCCG-CTCAGTTTTACATGATTTTTGGCG
* * *
31800 CCGAGACTCCTTGAAATATCTATATACATCTAATAAAATTCTTAGCCACATTGCATTTAAGAATT
258 CCGAGACTCCTTGAAATATCTATATTCATCTAATCAAA-TCTCAGCCACATTGCATTTAAGAATT
*
31865 TGCTTTTAC
322 TGTTTTTAC
* *
31874 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAAAAAAATATGAAAAATGATATTA
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTA
* * * *
31939 AAAGCTTGAAATGTCCTCCAAGTTTTTTGGCATTAAATTATATATATTTTATGAGTATTTTATCC
66 AAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATGAGTATTTTATCC
* * *
32004 AAAAATTGAGGAAAAATTTTTCTAGTCATTTTTTTGCAAAATTTTAGCCAAAATCATGTACCAAC
131 AAAAATTGAGGAAAAATTTTTCGAGTCA-TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAC
* * ** * * * *
32069 CATCATGGTTATTGGCTAGTAACACGTTCCGGGGACCCAGCTCAGTTTTACTTGATTTTTGGCTC
195 CATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGACCC-GCTCAGTTTTACATGATTTTTGGCGC
* * * * * *
32134 CG-GAACTACTAGAAATATCTATATTCATCTAATCAAATCTCAGACACATT-CGATTTATGGATA
259 CGAG-ACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGC-ATTTAAGAATT
32197 TGTTTTTAC
322 TGTTTTTAC
* * *
32206 GAGCATCTGAATCTTGTTTCGATTTTATTAGAAATTAATTT-GGAAAATA-GAAAAAAAGATATT
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATG-AAAAACGATATT
* * * * *** * * *
32269 AGAAGCGTCAAAAGCCCTTCAACAATTTTGGAGTTAAATTATA-AAATTTTTATGAGTATTTTAG
65 AAAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATA-TTTTATGAGTATTTTAT
* * * * *
32333 CCAAAAAATTGA-GAAAATACCTTTTAG-GTCAATTTTTACAAAATTTTAGCCAAAATCGTGTAA
129 CC-AAAAATTGAGGAAAA-A-TTTTTCGAGTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTAC
* ** * * * *
32396 TAACCCTCAAAGTTTTTCGCTAAAAAAGCG-TGCAGGGG-CCACGGCTCAGTATTACATGATTTT
191 TAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGGGACC-C-GCTCAGTTTTACATGATTTT
* * * * * * *
32459 TGGCGCCAAAACTCCTTGAGATATCCATATTCATCTAATCAAATCCCAGCCACATTGGATTTAAA
253 TGGCGCCGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCATTTAAG
32524 AATTTGTTTTTAC
318 AATTTGTTTTTAC
* **
32537 GAGTATCTGAATCTTGTTTCGATAAAATTAGAAATTAATTTTA-AAAAATATGAAAAACGATATT
1 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA-TTTAGAAAAATATGAAAAACGATATT
*
32601 AAAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATAAGTATTTTATC
65 AAAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATGAGTATTTTATC
* * *
32666 CAAAAATTGAGGAAAAAAATTTTCAAGTCATTTTTTTGCAAAATTTTATCCAAAATCGTGTAC
130 CAAAAATTGAGG-AAAAATTTTTCGAGTCA-TTTTTTGCAAAATTTTAGCCAAAATCGTGTAC
32729 CAA
Statistics
Matches: 1581, Mismatches: 236, Indels: 72
0.84 0.12 0.04
Matches are distributed among these distances:
330 10 0.01
331 445 0.28
332 417 0.26
333 541 0.34
334 69 0.04
335 99 0.06
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (330 bp):
GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAATATGAAAAACGATATTA
AAAGCGTGAAAAGTCCTCCAATTTTTTTGGCGTTAAATTATATATATTTTATGAGTATTTTATCC
AAAAATTGAGGAAAAATTTTTCGAGTCATTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACC
ATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGACCCGCTCAGTTTTACATGATTTTTGGCGCCG
AGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATTGCATTTAAGAATTTGTT
TTTAC
Done.