genome.fa.s16407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016407.1 Corchorus olitorius cultivar O-4 contig16440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66115

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141--1691	334	4.7	333	88	2	2148	34	13	13	37	1.85
141--1665	663	2.3	662	87	2	2144	34	13	13	37	1.85
1896--1925	15	2.1	14	93	6	51	33	0	0	66	0.92
3372--3401	15	2.1	15	93	6	53	66	0	0	33	0.92
3612--5387	332	5.3	333	89	2	2582	33	15	13	37	1.87
4467--4497	15	2.1	15	93	0	53	48	3	19	29	1.64
3621--5387	676	2.6	665	87	4	2577	33	15	13	37	1.87
9385--9829	239	1.9	240	87	2	653	35	12	13	38	1.83
9624--10693	332	3.3	329	79	9	1238	34	13	14	37	1.86
10599--10800	98	2.0	100	83	5	250	40	11	15	32	1.84
10280--11126	433	2.0	431	81	5	1021	34	13	14	36	1.86
10712--14465	332	11.4	327	79	7	3272	33	14	15	37	1.87
17323--17382	27	2.2	28	90	3	95	30	21	6	41	1.79
22185--22216	15	2.1	16	88	11	50	81	9	9	0	0.88
22793--22829	8	4.8	8	83	16	51	59	0	40	0	0.97
38371--38398	6	4.7	6	100	0	56	53	0	46	0	1.00
38895--38931	17	2.2	17	95	0	65	16	18	13	51	1.76
42807--43131	167	1.9	168	91	0	526	20	32	10	36	1.87
42851--43129	84	3.3	79	72	20	246	21	31	10	36	1.87
43132--43229	21	4.8	21	71	12	87	18	28	14	38	1.90
43106--43247	60	2.4	57	94	3	239	19	31	13	35	1.91
43488--43655	78	2.2	78	96	0	318	22	32	8	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43518--43791	138	2.0	138	99	0	539	22	32	9	36	1.85
43596--43715	60	2.0	60	98	0	231	25	29	10	35	1.88
43656--43965	78	4.0	78	96	0	557	19	33	8	37	1.83
43893--44016	51	2.4	51	95	0	221	18	32	8	41	1.80
43815--44080	129	2.1	129	97	0	496	19	32	9	38	1.83
44245--44275	15	2.1	15	100	0	62	29	6	32	32	1.83
46709--46766	18	3.4	16	74	19	55	34	18	29	17	1.94
46717--46766	18	2.8	18	84	0	64	36	20	26	18	1.95
46770--46996	57	4.0	57	95	1	397	29	18	22	29	1.97
47018--47353	156	2.2	154	88	6	491	31	18	25	24	1.97
53502--53564	11	5.7	11	84	0	90	17	47	19	15	1.83
53501--53560	22	2.7	22	100	0	120	18	46	18	16	1.84
54371--54824	224	2.0	224	96	0	836	34	27	16	21	1.95
54594--55649	542	2.0	540	96	0	1941	32	21	19	25	1.97

Tables:   1

The End!