Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016408.1 Corchorus olitorius cultivar O-4 contig16441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49962

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4281--4355
35
2.1
35
97
0
141
25
16
17
41
1.89
4560--4594
18
1.9
18
88
0
52
28
5
11
54
1.59
7024--7101
40
2.0
40
84
0
102
25
14
21
38
1.91
14840--15900
328
3.2
328
79
7
1074
37
16
13
32
1.87
15985--16025
21
2.0
21
90
0
64
24
31
14
29
1.95
24691--24799
57
1.9
57
92
0
182
33
21
26
18
1.96
24785--24880
47
2.0
48
88
8
142
45
14
25
14
1.83
25100--25129
3
10.0
3
100
0
60
0
33
0
66
0.92
28624--28729
52
2.0
52
90
0
167
23
13
19
43
1.86
29018--29047
2
15.0
2
100
0
60
50
0
0
50
1.00
49922--49949
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!