genome.fa.s16410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016410.1 Corchorus olitorius cultivar O-4 contig16443, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66143

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1430--1492	26	2.4	25	78	5	72	46	15	11	26	1.80
20484--20529	22	2.1	21	88	4	65	13	26	4	56	1.55
24374--24996	322	1.9	321	99	0	1219	29	17	11	40	1.86
25345--25384	3	13.3	3	100	0	80	67	0	0	32	0.91
27318--27357	2	20.5	2	94	5	73	50	0	0	50	1.00
28283--28359	26	3.0	26	92	3	120	15	23	23	37	1.93
28532--28609	41	1.9	41	100	0	156	23	7	21	47	1.76
28545--28611	22	3.2	22	61	26	54	22	8	22	46	1.79
29975--30012	19	2.0	20	84	5	51	63	15	13	7	1.51
31002--31075	19	3.9	19	66	8	53	44	4	14	36	1.65
31024--31593	50	11.4	50	84	3	637	42	4	16	36	1.69
31188--31275	20	4.0	20	70	26	70	43	4	12	39	1.63
32183--32313	68	1.9	67	93	3	226	12	22	16	48	1.80
32222--32265	20	2.2	20	83	0	52	18	18	6	56	1.62
32240--32351	48	2.3	48	90	0	170	14	20	18	46	1.84
32291--32419	68	1.9	68	88	3	197	15	18	16	49	1.80
32171--32546	116	3.2	115	85	1	509	12	21	18	47	1.82
32359--32476	48	2.5	48	88	0	173	11	19	19	49	1.79
32404--32748	68	5.1	68	92	0	564	12	22	18	46	1.82
32452--32496	20	2.2	20	88	0	63	15	17	8	57	1.63
32520--32564	20	2.2	20	88	0	63	17	15	8	57	1.63
32588--32632	20	2.2	20	84	0	54	13	17	11	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32288--33184	252	3.6	251	82	3	1165	13	21	18	46	1.83
32656--32700	20	2.2	20	84	0	54	20	17	6	55	1.64
32608--32864	116	2.2	116	91	0	415	13	21	18	45	1.84
32676--32796	48	2.5	48	90	0	179	10	22	21	45	1.82
32724--32932	68	3.1	67	90	2	319	12	21	18	46	1.82
32772--32816	20	2.2	20	88	0	63	15	17	8	57	1.63
32840--32884	20	2.2	20	84	0	54	20	17	6	55	1.64
32792--33048	116	2.2	116	91	1	417	13	21	18	46	1.83
32860--32980	48	2.5	48	90	0	179	10	22	21	45	1.82
32908--33389	68	7.1	68	79	4	515	13	21	17	47	1.81
32956--33000	20	2.2	20	88	0	63	15	17	8	57	1.63
33024--33068	20	2.2	20	92	0	72	17	17	6	57	1.60
33092--33129	20	1.9	20	88	0	58	18	13	7	60	1.56
32540--33116	184	3.1	183	96	0	1010	12	22	19	45	1.84
33160--33213	20	2.7	20	97	0	99	16	14	5	62	1.49
33092--33272	88	2.1	88	88	2	265	14	19	14	51	1.76
33200--33313	48	2.4	48	87	0	156	14	21	18	46	1.83
33296--33340	20	2.2	20	88	0	63	15	13	8	62	1.54
33180--33476	116	2.6	116	82	6	361	13	21	17	47	1.82
33319--33437	48	2.5	48	86	2	159	12	21	19	47	1.82
35458--35517	3	20.0	3	96	0	111	0	35	0	65	0.93
40373--40434	27	2.3	27	81	15	67	45	6	1	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41943--42027	23	3.8	23	80	6	68	38	7	12	41	1.71
41949--42002	23	2.3	23	93	6	92	42	5	11	40	1.64
42041--42102	22	2.8	22	87	0	88	46	8	8	37	1.63
43068--43393	162	2.0	162	100	0	652	38	20	14	26	1.91
46374--46424	25	2.0	25	100	0	102	19	7	27	45	1.78
50443--50487	13	3.5	13	81	3	56	4	20	0	75	0.97
51204--51458	132	1.9	131	88	1	386	37	10	1	50	1.46
51221--51486	132	2.0	132	83	5	340	37	9	2	50	1.47
57801--57838	20	1.9	20	94	0	67	42	13	21	23	1.88

Tables:   1

The End!