Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016411.1 Corchorus olitorius cultivar O-4 contig16444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4774
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35


Found at i:13 original size:2 final size:2

Alignment explanation


    Indices: 7--43  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

          1 CTTCTC

                                                                   
          7 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         44 GTTCTATTGC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:2630 original size:6 final size:6

Alignment explanation


    Indices: 2619--2659  Score: 82
    Period size: 6  Copynumber: 6.8  Consensus size: 6

       2609 AAAAAAACTA

                                                           
       2619 TATATC TATATC TATATC TATATC TATATC TATATC TATAT
          1 TATATC TATATC TATATC TATATC TATATC TATATC TATAT

       2660 AAGTTTAAAC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51


Consensus pattern (6 bp):   
TATATC

Done.