Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016413.1 Corchorus olitorius cultivar O-4 contig16446, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16585

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--44
2
22.0
2
80
14
52
51
2
0
46
1.14
1164--1260
51
1.9
49
91
8
160
38
11
9
41
1.73
1312--1336
12
2.1
12
100
0
50
48
8
8
36
1.62
2150--2200
22
2.3
22
86
6
68
58
0
19
21
1.39
2160--2203
22
2.0
22
95
0
79
56
0
22
20
1.42
2665--2695
16
1.9
16
93
0
53
61
6
3
29
1.37
10438--10484
18
2.7
17
83
6
58
44
0
2
53
1.12
12849--12920
36
2.0
36
94
0
126
29
19
22
29
1.98
15284--15351
21
3.4
20
74
12
68
42
8
1
47
1.43
15288--15352
18
3.5
17
73
19
58
41
7
1
49
1.41
15634--15739
3
35.3
3
77
20
107
66
1
0
32
1.03
15706--15797
2
49.0
2
73
12
70
54
2
2
41
1.25
15720--15797
23
3.5
23
80
5
88
53
2
2
41
1.28
15640--15797
9
18.2
9
74
17
81
60
1
1
36
1.16

Tables:   1

The End!