Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016414.1 Corchorus olitorius cultivar O-4 contig16447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27929

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--32
2
16.0
2
100
0
64
50
0
0
50
1.00
2849--2969
59
2.1
59
88
3
181
26
21
13
38
1.90
2987--3227
61
4.0
60
79
6
261
23
24
12
39
1.90
3028--3066
12
3.2
12
78
7
51
20
23
20
35
1.96
2936--3223
61
4.7
61
77
6
217
24
24
11
39
1.89
13554--13591
15
2.5
15
84
12
51
60
10
10
18
1.57
13554--13604
16
3.2
16
83
13
61
62
9
11
15
1.53
13563--13610
16
3.1
15
85
14
62
64
6
12
16
1.46
18938--18984
11
4.7
10
80
17
53
40
6
21
31
1.78
18949--18984
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!