genome.fa.s16416.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016416.1 Corchorus olitorius cultivar O-4 contig16449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107881

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4628--4997	184	2.0	185	98	0	715	30	18	16	34	1.93
10536--10586	17	3.1	16	86	8	66	21	21	21	35	1.96
21644--21971	166	2.0	166	98	0	638	40	18	16	24	1.91
23223--23249	12	2.2	12	100	0	54	40	0	18	40	1.51
26967--27003	6	6.2	6	100	0	74	35	32	16	16	1.91
34307--34453	59	2.3	64	89	9	223	31	17	16	35	1.92
34340--34452	31	3.7	30	85	14	151	32	15	16	35	1.90
34906--34981	37	2.1	37	100	0	152	28	18	21	31	1.97
35487--35527	22	1.9	22	85	5	57	31	4	2	60	1.30
39983--40204	29	7.7	29	78	5	218	21	17	20	40	1.91
46445--46470	13	2.0	13	100	0	52	46	23	15	15	1.83
47129--47543	23	18.2	23	74	9	296	49	23	7	19	1.73
47414--47455	16	2.7	16	85	3	50	45	23	14	16	1.84
50124--50245	23	5.3	23	91	0	127	54	21	4	18	1.62
50124--50245	46	2.7	46	82	0	145	54	21	4	18	1.62
51841--51878	20	1.9	19	94	5	67	31	5	31	31	1.80
51899--51930	7	4.7	7	96	3	57	0	9	46	43	1.35
51899--51945	14	3.5	13	83	13	60	2	6	44	46	1.40
51925--51951	13	2.1	13	100	0	54	7	0	44	48	1.31
53400--53459	28	2.1	28	84	3	75	58	11	11	18	1.63
60082--60182	30	3.4	30	88	0	148	26	16	30	25	1.97
63757--63852	35	2.5	41	74	22	118	37	21	16	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63831--64213	52	7.4	52	92	2	610	37	13	18	30	1.89
63821--64213	154	2.5	157	91	2	632	38	13	17	30	1.89
64173--64289	37	3.2	37	86	6	166	35	11	17	35	1.86
64968--65028	26	2.3	26	100	0	122	50	24	11	13	1.74
65750--65778	1	29.0	1	100	0	58	0	0	0	100	0.00
75410--75520	55	2.0	55	94	0	195	47	18	15	18	1.82
75966--75993	2	14.0	2	100	0	56	50	0	0	50	1.00
77155--77180	12	2.2	12	100	0	52	42	7	7	42	1.62
82570--82653	41	2.0	41	100	0	168	38	14	19	28	1.90
86564--86612	17	3.0	16	80	11	55	36	10	38	14	1.80
88545--89615	535	2.0	531	91	2	1560	39	19	15	26	1.91
91504--91577	29	2.6	29	82	14	100	39	2	5	52	1.38
91488--91565	31	2.7	29	84	7	97	39	2	5	52	1.37
93614--93658	18	2.4	19	77	7	56	13	13	6	66	1.43
104154--104479	40	8.2	40	92	1	503	19	26	19	33	1.96
104154--104479	119	2.7	120	91	1	512	19	26	19	33	1.96
104154--104479	79	4.1	80	92	1	503	19	26	19	33	1.96
107769--107851	30	3.0	27	84	10	121	42	3	3	50	1.37

Tables:   1

The End!