Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001642.1 Corchorus olitorius cultivar O-4 contig01642, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1703
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Found at i:1129 original size:21 final size:21

Alignment explanation


    Indices: 1103--1177  Score: 125
    Period size: 21  Copynumber: 3.6  Consensus size: 21

       1093 AAAATGCTAT

                                  
       1103 AAGCTCATTGGAGCAA-GTTCC
          1 AAGCTCATTGGAG-AAGGTTCC

                                 
       1124 AAGCTCATTGGAGAAGGTTCC
          1 AAGCTCATTGGAGAAGGTTCC

                               * 
       1145 AAGCTCATTGGAGAAGGTTTC
          1 AAGCTCATTGGAGAAGGTTCC

                        
       1166 AAGCTCATTGGA
          1 AAGCTCATTGGA

       1178 ATTGCCTAAG


Statistics
Matches: 52,  Mismatches: 1, Indels: 2
        0.95            0.02        0.04

Matches are distributed among these distances:
  20    2  0.04
  21   50  0.96

ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25


Consensus pattern (21 bp):   
AAGCTCATTGGAGAAGGTTCC
Done.