Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016420.1 Corchorus olitorius cultivar O-4 contig16453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90866

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
433--3094
666
4.0
665
89
2
3956
30
16
19
33
1.94
2874--3332
227
2.0
229
88
2
683
29
16
17
37
1.91
3103--5171
678
3.0
675
88
2
3074
30
16
18
34
1.93
5473--6907
322
4.5
321
87
4
1916
32
14
16
36
1.89
8625--8650
13
2.0
13
100
0
52
15
0
7
76
0.99
9732--9814
32
2.6
32
76
0
85
6
10
30
53
1.60
9737--9782
16
2.9
16
83
0
56
6
8
26
58
1.52
12196--12243
24
2.0
24
95
0
87
25
35
18
20
1.95
14511--14571
21
2.9
21
75
0
68
34
11
16
37
1.85
26006--26043
19
2.0
19
90
10
60
63
5
2
28
1.30
27090--27157
33
2.1
33
97
0
127
22
8
23
45
1.80
28618--28677
2
31.5
2
83
9
81
56
0
0
43
0.99
28616--28677
21
3.0
21
100
0
124
58
0
0
41
0.98
29761--29925
82
2.0
82
96
0
303
42
11
12
33
1.79
38384--38443
9
6.3
9
78
14
59
83
0
16
0
0.65
38384--38438
12
4.5
12
86
10
76
83
0
16
0
0.64
38384--38443
29
2.1
28
84
9
77
83
0
16
0
0.65
40597--40640
12
3.7
12
93
0
70
11
65
20
2
1.35
40597--40640
6
7.3
6
84
0
61
11
65
20
2
1.35
43147--43206
21
2.9
21
84
0
84
36
20
6
36
1.79
43278--43328
21
2.4
21
93
0
93
37
19
9
33
1.85
43128--43375
124
2.0
124
95
0
442
31
22
11
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51494--51668
88
2.0
87
95
1
314
43
9
8
39
1.66
52777--52820
20
2.2
20
84
11
56
36
11
2
50
1.51
54079--54110
15
2.1
16
94
5
57
37
0
0
62
0.95
54382--54457
21
3.7
21
65
8
57
46
5
0
48
1.24
54379--54462
42
2.0
42
95
0
150
48
5
0
45
1.27
54704--54761
26
2.1
26
84
15
73
51
6
1
39
1.39
76711--76747
18
2.1
18
94
0
65
48
16
18
16
1.81
85162--86931
323
5.3
324
76
12
1456
37
16
14
32
1.88
86988--90854
334
11.8
333
79
7
4081
32
14
17
35
1.90
86944--90862
652
6.0
650
84
6
4144
32
14
17
35
1.90

Tables:   1

The End!