Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016421.1 Corchorus olitorius cultivar O-4 contig16454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33855

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
491--527
19
2.0
19
94
5
67
32
0
0
67
0.91
497--538
19
2.2
19
86
0
57
38
2
0
59
1.10
863--1984
323
3.5
320
86
6
1461
31
15
17
35
1.91
2285--2333
25
2.0
25
95
0
89
12
30
20
36
1.89
2330--2371
21
2.0
21
86
9
59
47
35
0
16
1.47
3215--3263
25
2.0
25
100
0
98
12
32
20
34
1.90
3260--3301
22
2.0
21
86
9
59
47
33
0
19
1.49
11914--12016
39
2.6
39
83
6
136
60
10
14
14
1.60
14470--14506
19
1.9
19
94
0
65
40
13
16
29
1.86
18261--18581
81
4.0
81
91
0
489
22
20
14
42
1.87
31556--31754
71
2.8
71
86
3
240
34
24
16
25
1.95
31910--31955
24
1.9
24
82
8
58
28
26
23
21
1.99

Tables:   1

The End!