genome.fa.s16422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016422.1 Corchorus olitorius cultivar O-4 contig16455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110126

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2190--2388	71	2.8	71	86	3	240	34	24	16	25	1.95
2545--2616	29	2.5	29	100	0	144	26	8	12	52	1.67
20591--20630	21	2.0	21	85	5	55	20	45	15	20	1.86
28954--29109	15	10.8	15	71	10	101	24	23	17	34	1.96
28952--29109	30	5.0	30	78	13	163	24	23	17	34	1.96
28984--29063	39	2.1	39	87	0	115	22	21	21	35	1.96
28954--29093	69	2.0	69	88	0	208	24	22	18	34	1.96
34034--34092	21	2.9	21	85	5	77	35	11	16	35	1.86
45089--45164	29	2.5	30	79	14	93	32	23	9	34	1.87
53677--53702	3	8.7	3	100	0	52	34	0	0	65	0.93
55915--55995	40	2.0	40	90	4	128	41	18	12	27	1.86
60589--60626	19	2.0	19	89	0	58	42	13	13	31	1.82
69444--69480	7	5.4	7	87	6	58	8	89	0	2	0.58
69444--69480	13	2.7	14	95	4	67	8	89	0	2	0.58
84979--85012	16	2.1	16	100	0	68	50	11	5	32	1.63
87569--87648	42	1.9	42	92	0	133	21	17	22	38	1.93
89093--89121	14	2.0	15	93	6	51	55	24	13	6	1.63
102505--102545	21	2.0	21	100	0	82	19	9	46	24	1.80
102613--102708	49	2.0	49	95	0	174	37	11	20	30	1.88
103710--103740	14	2.2	14	94	0	53	29	16	6	48	1.70
107077--107119	21	2.0	21	100	0	86	13	4	23	58	1.55
107546--107696	51	3.0	51	85	4	198	35	15	20	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107684--107826	43	3.4	43	86	5	211	39	20	13	27	1.89
107705--107969	144	1.9	142	87	3	397	40	18	15	25	1.89
107849--110126	42	55.4	42	80	9	2122	40	17	15	25	1.89
109742--110126	41	9.4	41	88	2	576	37	17	16	27	1.92
109732--110126	81	4.8	82	88	2	580	38	17	16	27	1.91

Tables:   1

The End!