Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016424.1 Corchorus olitorius cultivar O-4 contig16457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55220

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4802--4838
19
1.9
19
88
0
56
40
13
16
29
1.86
13686--13741
29
1.9
29
100
0
112
30
17
30
21
1.96
19262--19406
73
2.0
73
90
2
229
31
12
26
28
1.93
19708--19735
5
5.6
5
100
0
56
57
0
42
0
0.99
28407--28561
79
2.0
80
82
1
195
52
12
12
22
1.73
29057--29082
7
3.7
7
100
0
52
73
0
26
0
0.84
29256--29296
18
2.4
17
83
4
55
14
7
7
70
1.31
29256--29296
17
2.3
18
84
16
59
14
7
7
70
1.31
39707--39738
13
2.5
13
100
0
64
46
9
15
28
1.77
41074--41131
19
2.9
19
82
5
71
29
22
13
34
1.93
45668--45697
2
15.0
2
100
0
60
50
0
0
50
1.00
52974--53097
48
2.6
49
97
1
232
39
0
13
45
1.49
55180--55220
3
13.7
3
100
0
82
0
34
0
65
0.93

Tables:   1

The End!