Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016430.1 Corchorus olitorius cultivar O-4 contig16463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52274

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6812--6843
3
10.7
3
100
0
64
34
0
0
65
0.93
11011--11155
74
2.0
74
94
0
254
22
24
24
28
1.99
12278--12328
27
1.9
26
84
4
66
66
1
1
29
1.13
30976--31014
19
2.1
19
85
0
51
56
2
2
38
1.27
35631--35669
16
2.4
17
91
8
71
46
10
28
15
1.78
39361--39386
7
3.7
7
100
0
52
88
0
11
0
0.52
39649--39679
1
31.0
1
100
0
62
0
0
0
100
0.00
42326--42351
8
3.2
8
100
0
52
34
34
15
15
1.89
44104--44328
122
1.8
122
90
0
360
13
22
20
42
1.88
44393--44459
20
3.3
20
69
10
64
32
8
25
32
1.87
44432--44740
32
9.2
32
85
13
424
31
8
26
33
1.87
44499--44564
21
3.2
21
67
4
62
34
7
27
30
1.85
44395--44755
104
3.5
104
83
14
517
32
8
25
33
1.86
44585--44643
21
2.9
20
67
5
55
30
8
27
33
1.86
44463--44755
72
4.2
72
90
8
469
32
8
25
33
1.86
44572--44636
20
3.2
21
67
6
62
33
7
27
30
1.85
44395--44740
177
2.0
168
92
6
568
32
8
26
33
1.87
44984--45016
12
2.8
12
95
0
57
9
9
18
63
1.49
47273--47324
27
1.9
27
96
0
95
44
7
11
36
1.70
48893--50818
333
5.9
332
87
4
2573
36
15
14
33
1.88
51233--52273
337
3.1
335
92
2
1678
37
14
14
33
1.87

Tables:   1

The End!