Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016432.1 Corchorus olitorius cultivar O-4 contig16465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78127

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14697--14776
41
2.0
41
97
0
151
27
13
18
40
1.89
18982--19038
30
1.9
30
96
0
105
50
26
1
21
1.58
18975--19042
30
2.6
24
72
24
64
50
26
2
20
1.63
18988--19040
17
3.4
17
65
20
51
50
26
0
22
1.49
31078--31115
20
2.0
20
89
5
60
26
0
18
55
1.43
31192--31224
2
16.5
2
93
0
57
51
0
0
48
1.00
36278--36336
19
3.0
20
74
13
59
35
10
20
33
1.86
36131--36398
139
1.9
139
96
0
500
36
15
18
29
1.92
37392--37432
17
2.4
18
76
12
50
51
12
4
31
1.60
37563--37606
2
23.5
2
78
21
51
54
0
2
43
1.12
37563--37606
12
3.9
11
88
11
63
54
0
2
43
1.12
37441--37686
129
1.9
128
91
4
406
43
9
8
37
1.69
49015--49214
99
2.0
99
97
0
373
28
21
17
33
1.96
66976--67002
12
2.2
12
100
0
54
48
22
7
22
1.75
67271--67298
6
4.7
6
100
0
56
67
0
14
17
1.22
71083--71242
79
2.0
79
97
0
302
34
16
21
28
1.95
74806--75740
331
2.8
329
80
6
1100
38
15
13
32
1.87
75551--75920
193
1.9
193
83
3
476
35
14
14
35
1.86
75750--77860
331
6.4
331
82
5
2375
35
16
14
33
1.89
75750--77860
655
3.2
651
82
5
2676
35
16
14
33
1.89

Tables:   1

The End!