Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016434.1 Corchorus olitorius cultivar O-4 contig16467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64646

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1422--1506
31
2.7
31
96
0
152
29
28
25
16
1.97
16912--16941
15
2.0
15
93
0
51
50
0
33
16
1.46
16916--17004
3
29.7
3
76
0
52
39
1
42
16
1.56
16928--16989
27
2.3
27
85
0
79
38
1
45
14
1.55
23681--23717
16
2.3
17
86
9
51
24
10
0
64
1.25
25390--25487
31
3.2
31
85
0
124
17
25
25
31
1.97
26461--26500
17
2.4
17
87
8
55
37
20
20
22
1.94
27590--27624
16
2.2
16
100
0
70
62
25
0
11
1.28
31666--31758
3
30.3
3
95
2
159
65
0
34
0
0.93
32160--32208
15
3.3
15
82
0
62
6
12
2
79
0.99
32156--32187
7
4.4
7
92
7
55
0
15
0
84
0.63
33532--33592
3
20.0
3
96
3
113
32
0
1
65
1.02
33798--33825
6
4.7
6
100
0
56
14
0
0
85
0.59
36057--36085
2
14.5
2
100
0
58
51
0
0
48
1.00
52941--53104
81
2.0
81
90
0
256
25
18
26
30
1.98
60855--60892
2
19.0
2
100
0
76
50
0
0
50
1.00
62478--62510
17
1.9
17
100
0
66
45
6
12
36
1.66

Tables:   1

The End!