Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016435.1 Corchorus olitorius cultivar O-4 contig16468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119410
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:2690 original size:26 final size:29
Alignment explanation
Indices: 2643--2699 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
2633 GTCAATAGTT
2643 ACAACAATGATCCATTTGGCCAAG-AAAAA
1 ACAACAATGATCCA-TTGGCCAAGCAAAAA
*
2672 ACAACAATGATCCA-T-GCCATGCAAAAA
1 ACAACAATGATCCATTGGCCAAGCAAAAA
2699 A
1 A
2700 AGCAAAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 5 0.19
27 7 0.27
29 14 0.54
ACGTcount: A:0.49, C:0.23, G:0.12, T:0.16
Consensus pattern (29 bp):
ACAACAATGATCCATTGGCCAAGCAAAAA
Found at i:32978 original size:6 final size:6
Alignment explanation
Indices: 32967--32991 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32957 AGCGTAGCCT
32967 AGCCCC AGCCCC AGCCCC AGCCCC A
1 AGCCCC AGCCCC AGCCCC AGCCCC A
32992 AACAGAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.64, G:0.16, T:0.00
Consensus pattern (6 bp):
AGCCCC
Found at i:40666 original size:5 final size:5
Alignment explanation
Indices: 40656--40693 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
40646 TATATTAATG
40656 TTATC TTATC TTATC TTATC TTATC TTATC -TATC TTAT
1 TTATC TTATC TTATC TTATC TTATC TTATC TTATC TTAT
40694 TATTATATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATC
Found at i:43451 original size:323 final size:322
Alignment explanation
Indices: 41469--47855 Score: 6920
Period size: 323 Copynumber: 19.7 Consensus size: 322
41459 ATACTTTACA
* * * ** * *
41469 TCATCTAACCAAATCTCA-TCAACATTGGATTTAATAATTTGTTTTTACGAGTATCTGAATATTG
1 TCATCTAACCAAATCTCAGCCAA-ATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * * * * *
41533 TTTCGATGTAATTAGAAATTAATTCGGAATAAAACGGAAAAACGATATTAGAAGTGTAAAAAACC
65 TTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCC
* * ** * * *
41598 CTTCAATTTTTTTGGTGTTGAATTACATA-TTTTTTCTGAGTATTGTGGCAAAAAATTGAGAA-A
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACA
* *
41661 AACTTTTT-GGGTC-AGTTTTAGCCGAAATCGTGTACTAACCA-TCACGGTTTTTGGCTAAAAAC
195 AA-TTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAAAAC
* * * * * * * *
41723 GCGTTCCG-GAGCCACGACTCAATTATGCATGATTTTTGGC-GTAAAGACTTCTTTAAATATCTA
258 GTGTTTCGAG-GCCCCGACTCAGTTTTGCATGATTTTTGGCAG-AATGACTCCTTGAAA-ATCTA
41786 TAT
320 TAT
* * * * * * ** * *
41789 TTATCAAACTAAATCTCAGCCACATTGGATTTAATAATTT-ATTTTACG-GCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
41852 TTCGATTTAACTAGAAATAAATTTGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCC
66 TTCGATTTAATTAGAAATAAATTTGG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCC
* * *
41917 CGTCAATATTTTTTGCATTGAATTATATA-TTTTTTCCGAGTATTGTGGCAAAAAATTAATAACA
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACA
* * * * *
41981 AATTTTTCGGGTTAGTTTTTAGCCGAAATCGGGTACGT---GTT-ACGG-TTTTGGCATAAAAAC
195 AATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAC-TAACATTCACGGTTTTTTGC-TAAAAAC
** * * * * * * *
42041 ACGTTTCGGGGCCCCGGCTCTGTTTTGCATGGTTTTTGGCATAAAGACTCATTGAAATATCTATA
258 GTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAA-ATCTAT-
42106 AT
321 AT
* * * * *
42108 T-ATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * *
42172 TTCGATTTAATTAGAAATAAATTCGGAATAAAAAAGG-AAAACTATATT-GAAAGCGTGAAAACC
66 TTCGATTTAATTAGAAATAAATTTGGAA-AAAAATGGAAAAACGATATTAG-AAGCGTGAAAAGC
* * * ** * * * * *
42235 CCAT-AAACATTTTTGGCGTT-TTTTATATA-TTTTTTCTGAATATTATGGCAAAAATTTGAGGA
129 CCGTCAATC-TTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATT-AAGA
* * * * * *
42297 A-AAACTATTCGGGTAAGTTTTTACAAAATTTTAGCCGAAGTTGTGTACTAATAATCATCACGGT
192 ACAAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACTAA-CAT--TCACGGT
* *** * *
42361 TTTTGGCTAAAAACACATTTCG-GAGTCCCGACTCAATTTTGCAT-ATTTTTTGCGCA-AAT-AC
244 TTTTTGCTAAAAACGTGTTTCGAG-GCCCCGACTCAGTTTTGCATGA-TTTTTG-GCAGAATGAC
42422 TCCTTGAAACATCTATAT
306 TCCTTGAAA-ATCTATAT
** * ** * * *
42440 TCAT-TGAAAGAAATCTCAGCCACATT-GGTTATAAGAATTTGTTTTTACGTGCATCTGAATTTT
1 TCATCT-AACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * * * * **
42503 GTTTTGATTTAATTAGAAATTACTTCGGAAAAAAATGTAAAAAAACGATATTAGAAGCAAGAAAA
64 GTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATG--GAAAAACGATATTAGAAGCGTGAAAA
* * * * * * * *
42568 ACCCATCAATCTTTTTGGCGTTGAATTATATA-TTTTTTCTGAGTGTCGTGGTAAAAAATTGAGA
127 GCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAG-
* * * * * * * *
42632 AAAAAACTTTTCGGGTCAGTTTTTAACCAAAATCGTGTACTAACCA-TCACAGTTTTTGGATAAA
191 AACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAA
* * ** * * * * *
42696 AACGAGTTTCGGGGCATCGATTCAGTTTTGCATCATTTTTGGCAAAAGGACTCCTTGAAATATAT
255 AACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAA-ATCT
* *
42761 TTAA
319 ATAT
* *
42765 TCATATAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
42830 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
* * **
42895 GTCAATCTTTTCGGCATTGAATTATATA-TTTTTT-CGAGTATTGTGGCAAAATATTGTGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* *
42958 ATTTTTCGGGTCAGTTTTTAGCCGCAATCGTGTACTAACATTCACGGTTTTTTTGCTAAAAACGT
196 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGG-TTTTTTGCTAAAAACGT
* *
43023 GTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTTGAAAAGTCCATAT
260 GTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAA-TCTATAT
* *
43087 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAAGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
43152 TTCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCTC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
*
43217 GTCAATCTTTTTGACATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* *
43282 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGTTAAAAACATG
196 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTG
* *
43347 TTTCGAGGCCCCGACTCAGTTTTGCATTATTTTTGGCAGAATGACTCCTTGATAAATCCATAT
261 TTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGA-AAATCTATAT
* *
43410 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGTATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
43475 TTCGATTTAATTAGAAATAAATTTGGGAAAAAATGGAAAAACGATATTAGAAGCGTTAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
43540 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
43605 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTGTTTGCTAAAAACGT
196 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTT-TTTGCTAAAAACGT
* *
43670 GTTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATAT
260 GTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCTATAT
*
43734 TCATCTAACGAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
43799 TTCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
43864 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* *
43929 ATTTTTCGAGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCAAAAAACGTG
196 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTG
* *
43994 TTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATAT
261 TTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCTATAT
*
44057 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
44122 TTCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
* * *
44187 GCCAATCTTTTTGGCATTGAATTATATATTTCTTTCCTAGTATTGTGGCAAAAAATTAAGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* * *
44252 ATTTTTCGGGTCAATTTTTTGCCGAAATCGTGTACGT--TATTCACGGTTTTTTGCAAAAAACGT
196 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAC-TAACATTCACGGTTTTTTGCTAAAAACGT
** * *
44315 GTTTCGAGGCTTCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATAT
260 GTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCTATAT
* *
44379 TCATCTAACCAAATCTCAGGCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTAT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
44444 TTCCATTTAATTAGAAATAAATTTGGAAAAAAATGGGAAAACGATATTAGAAGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
*
44509 GTCAATCTTTTTGGCATTGAATTATAT-TTTTTTT-GGAGTATTGTGGCAAAAAAATTAAGAACA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGC-AAAAAATTAAGAACA
* *
44572 TATTTTTCGGGTCAATTTTTAGCCGAAAATCGTGTACTAACTTTCA-GAGTTTTTTGCTAAAAAC
195 AATTTTTCGGGTCAATTTTTAGCCG-AAATCGTGTACTAACATTCACG-GTTTTTTGCTAAAAAC
* ** * *
44636 TTGTTTCGAGGCCTTGACTCAGTTTTGCATGATATTTGGCAGAATGACTCCTTGAAAAATCCATA
258 GTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCTATA
44701 T
322 T
*
44702 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
44767 TTCGATTTAGTTAGAAATAAATTTGGAAAAAAATGGAAAAAAC-ATATTAGAAGCGTGAAAAGCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAGCC
* *
44831 CGTCAATCTTTTTTGAATTGAATTATAT-TTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACA
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACA
* *
44895 AATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAATAATATTCACGGTTTTTTGCTAAAAACGT
195 AATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGT
* * * * *
44960 GTTTTCGAGGCTCCGGCTCAGTTTTGCATGATTTTTAGCAGAATCACTCCTTCGAAAATCCATAT
260 G-TTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTT-GAAAATCTATAT
**
45025 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTATAAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* **
45090 TTC-ATTTTAATTGGAAACT-AATTTTTAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
66 TTCGA-TTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
*
45153 CCGTCAATATTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAAC
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAAC
* * * *
45218 AAATTTTGCGTGTCAATTTTTAGCCGAAATCGTATACTAACATTCACGGTTTTTTGCTAAAAACT
194 AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACG
* * *
45283 TGTTTCGAGGCCCCGACTCAGTTTTACATGATATTTGGCAGAATGACTCCTTGAAAAATCCATAT
259 TGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCTATAT
*
45348 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATTTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
45413 TTCGATTTAATTAGAAATAAATTTGCGAAAAAATATGGAAAAACGATATTAAAAGCGTGAAAAGC
66 TTCGATTTAATTAGAAATAAATTTG-GAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAGC
*
45478 CCGTCAATCCTTTTGGCATTGAA-T-TATATTTTTTTCCGAGTATTGTGG-AAAAGAATTAAGAA
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAA-AATTAAGAA
45540 CAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACACATTCACGGTTTTTTGCTAAAA
193 CAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACT-A-ACATTCACGGTTTTTTGCTAAAA
*
45605 ACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCA
256 ACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCTA
45670 TAT
320 TAT
45673 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
45738 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
* * * * * *
45803 GTCAATCTTTTTGGCGTTGATTTATATA-TTTTTT-CTATGTAATATGGCAAAAAATTGAGGAA-
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGA-GTATTGTGGCAAAAAATT-AAGAAC
* * *
45865 AAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAGTCGTGTACTAAAAATCATT-ACGGTT
194 AAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACT---AA-CATTCACGG-T
* ** * * * * *
45929 TTTTTGGTAAAAACGCATTTCG-GAGTCCTGGCTCAATTTTGCTTAT-TTTTTTGTGCA-AAT-A
244 TTTTTGCTAAAAACGTGTTTCGAG-GCCCCGACTCAGTTTTGC--ATGATTTTTG-GCAGAATGA
*
45990 CTCCTTAAAATATCTATAT
305 CTCCTTGAAA-ATCTATAT
* ** ** * * *
46009 TCATCGAAAGAAATCTCAG-CAACATT-GGTTATAAAGATTTGTTTTTACGTGCTTCTGAATCTT
1 TCATCTAACCAAATCTCAGCCAA-ATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * * * **
46072 GTTTCGATTTAATTAGAAATTAGTTCGGAAAAAAAAATGTAAAAACGATATTAGAAGCAAGAAAA
64 GTTTCGATTTAATTAGAAATAAATTTGG--AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
* ** * * * * *
46137 ACCTATCAATCTTTTTGTCGTTGAATTATATATTTTTTT--GAGTGTCGTGGCAAAAAATTGAGA
127 GCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGA
* * * * * *
46200 AAAAACTTTTCGGATAAGTTTTTGCAAAATTTTAGCCGAAGTCGTGTATTAA-ATCATCACAGTT
192 ACAAATTTTTCGG----G----T-C-AATTTTTAGCCGAAATCGTGTACTAACAT--TCACGGTT
* ** * * * * *
46264 TTTGGCTAAAAACGCATTTCG-GAGTCCTGGCTCAATTTTGCATATATTTTTGCGCA-AAT-ACT
245 TTTTGCTAAAAACGTGTTTCGAG-GCCCCGACTCAGTTTTGCAT-GATTTTTG-GCAGAATGACT
46326 CCTT-AAAATGTCTATAT
307 CCTTGAAAA--TCTATAT
** * ** * * *
46343 TCAT-TGAAAGAAATCTCAGCCACATT-GGTTATAAAGATTTGTTTTTACGTGCTTCTGAATCTT
1 TCATCT-AACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * *** * * * *
46406 GTTTCGATTTAATTAAAAATTAATTCAAAAAAAAAT-TAAAAATGATATTAGAAGCATGAAAACC
64 GTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
* * * * * * * *
46470 CCTTCAATTTTTTTGGCGTTGAATTATATATTTTTTT---AGTATCGTGACAAAGAATTGAGGTA
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATT-AAGAA
* * * * *
46532 -AAATTTTTCGGGT-TAGTTTTAGCCGAAATCGTGTACAAACCA-TCACGGTATTTGGCTAAAAA
193 CAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAAAA
* * * * * * *
46594 CGCGTTTC--GGTCTCGACTCAGTTTTGCATGGTTTTTGGCAAAAAGACTCCTTGAAATATTTAT
257 CGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAA-ATCTAT
*
46657 AG
321 AT
* * * * * * *
46659 TCATCTAATCAAATCTTAGCCACATTGGATTTACGGTTTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * *
46724 TTCAATTTATTTAGAAATAAATTTGG-AAAAAATGGAAAAACTATATTGGAAGCGTGAAAAAACC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTG-AAAAGCC
* ** * ** * *
46788 CTTCCTTATTTTTGGTGTTGAATTATATA--TTTTTCTGAGTATTGTGGCAAAAAATTGAGAA-A
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACA
* * * * *
46850 AATGTTTTCGAGTTAGTTTTTAGCCGAAATCGTGCACTAACCA-CCACGGTTTTTTGCTAAAAAC
195 AAT-TTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAAAAC
* * * * *
46914 GCGTTTCGTA-GCCCCGACTCAATTTTGAATGATTTTTGGC-GTGA-GAACTGCTTGAAATATCT
258 GTGTTTCG-AGGCCCCGACTCAGTTTTGCATGATTTTTGGCAG-AATG-ACTCCTTGAAA-ATCT
46976 ATAT
319 ATAT
* * * * * *
46980 TCATCGAACCAAATC-CTAACCACATT-GGATATAACGATTTGTTTTTACGAGTATCTGAATCTT
1 TCATCTAACCAAATCTC-AGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * * * * * * * *
47043 ATTTTGATTTAATTAGAAATTAA-TTCGAAAAAAATGG-GAAATGATATTAGTAGTGTGAAAAAC
64 GTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
* * * * *
47106 CCTTCAATCTTCTTGGCATTGAATTATATATTTGTTAT--GAGTATTGTGGCAAAGAATTGAGAA
129 CCGTCAATCTTTTTGGCATTGAATTATATATTT-TTTTCCGAGTATTGTGGCAAAAAATTAAGAA
* ** * * *
47169 AAAAAATTCCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCA-TCACGG-TTTTTGCCTAAAA
193 CAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTG-CTAAAA
* * * * * * *
47232 ACGTGTTTCGGGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATTTT
256 ACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAA-ATCTA
47297 TAT
320 TAT
** * * *
47300 TCATGGAACCAAATCTCAGTCACATT-GGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTG
1 TCATCTAACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTG
*
47364 TTTCGATTTAATTAGAAACT-AATTTGG--AAAAA---AAAAACGATATTAGAAGCGTGAAAAAC
65 TTTCGATTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
* * * * ** ** * *
47423 CCTTCCATATTTTTGGCATTGGATTATATA-TTTTTTCTAAGTATTGTAACCAAAAAAATGAGGA
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGT-GGC-AAAAAATTAAGA
* * * * *
47487 A-AAACTTCTCGGGTAAGTTTTTGCAAAATTTTAGCTGAAATCTTGTACTAACA-TCACGG-TTT
192 ACAAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTT
* * ** * * * * * *
47549 TTGTCTAAAAATGCG-TTCTGAAACCTCGGCTCAATTTTGCATGATTTTTGGTACAAAGACTCCT
247 TTG-CTAAAAACGTGTTTC-GAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCT
* *
47613 TGAAATATTTTTAT
310 TGAAA-ATCTATAT
** * * * *
47627 TCATGGAACCAAATCTCAGTCACATT-GGATATAAGGATTTGTTTTTACGAGCATCTAAATCTTG
1 TCATCTAACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * *
47691 TTTCGATTTAATTAGAAACT-AATTTGG-AAAAAGTGGAAAAACGATATTACAAGTGTGAAAAGC
65 TTTCGATTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
* * *
47754 CCGTCAATCTTTTTGGCGTTGAATTATATATTTTCTTT--GAGTATTGTGGAAAAAAATTGAGAA
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTT-TTTCCGAGTATTGTGGCAAAAAATT-A-AG
* * **
47817 AAAAAACTTTTCGGGTCGGTTTTTAGCCGAAATCGTGTA
191 AACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTA
47856 TACAAAAAAC
Statistics
Matches: 5313, Mismatches: 568, Indels: 370
0.85 0.09 0.06
Matches are distributed among these distances:
314 3 0.00
315 23 0.00
316 116 0.02
317 108 0.02
318 224 0.04
319 273 0.05
320 312 0.06
321 240 0.05
322 555 0.10
323 1395 0.26
324 590 0.11
325 343 0.06
326 9 0.00
327 187 0.04
328 46 0.01
329 8 0.00
330 27 0.01
331 122 0.02
332 38 0.01
333 100 0.02
334 215 0.04
335 65 0.01
336 169 0.03
337 74 0.01
338 65 0.01
339 6 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (322 bp):
TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTG
TTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAATCTATAT
Found at i:43766 original size:969 final size:962
Alignment explanation
Indices: 41469--48147 Score: 7042
Period size: 968 Copynumber: 6.9 Consensus size: 962
41459 ATACTTTACA
* * ** * *
41469 TCATCTAACCAAATCTCA-TCAACATTGGATTTAATAATTTGTTTTTACGAGTATCTGAATATTG
1 TCATCTAACCAAATCTCAGCCAA-ATT-GAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * * * *
41533 TTTCGATGTAATTAGAAATTAATTCGGAATAAAACGGAAAAACGATATTAGAAGTGTAAAAAACC
64 TTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACC
* * ** * *
41598 CTTCAATTTTTTTGGTGTTGAATTACATA-TTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAA
129 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAA
* *
41662 ACTTTTT-GGGTC-AGTTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGC
194 A-TTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATCACGGTTTTTTGCTAAAAACGC
* * * * * *
41725 GTTCCG-GAGCCACGACTCAATTATGCATGATTTTTGGC-GTAAAGACTTCTTTAAATATCTATA
257 GTTTCGAG-GCCTCGACTCAGTTTTGCATGATTTTTGGCAG-AAAGACTCCTTGAAATATCTATA
* * * * * * ** * *
41788 TTTATCAAACTAAATCTCAGCCACATTGGATTTAATAATTT-ATTTTACG-GCATATGAATCTTG
320 TTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
*
41851 TTTCGATTTAACTAGAAATAAATTTGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
385 TTTCGATTTAATTAGAAATAAATTTGG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
* * * *
41916 CCGTCAATATTTTTTGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAATAACA
449 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTT-CGAGTATTGTGGCAAAAAATTGAGAACA
* * * *
41981 AATTTTTCGGGTTAGTTTTTAGCCGAAATCGGGTACGT---GTT-ACGG-TTTTGGCATAAAAAC
513 AATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTAC-TAACATTCACGGTTTTTTGC-TAAAAAC
* * * * * *
42041 ACGTTTCGGGGCCCCGGCTCTGTTTTGCATGGTTTTTGGCATAAA-GACTCATTGAAATATCTAT
576 GCGTTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCA-AAATGACTCCTTGAAA-ATCCAT
* * * * *
42105 AATT-ATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCT
639 -ATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCT
* * *
42169 TGTTTCGATTTAATTAGAAATAAATTCGGAATAAAAAAGG-AAAACTATATT-GAAAGCGTGAAA
703 TGTTTCGATTTAATTAGAAATAAATTTGGAA-AAAAATGGAAAAACGATATTAG-AAGCGTGAAA
* * * * ** * * * *
42232 ACCCCAT-AAACATTTTTGGCGTT-TTTTATATA-TTTTTTCTGAATATTATGGCAAAAATTTGA
766 AGCCCGTCAATC-TTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATT-A
* * * * * * *
42294 GGAA-AAACTATTCGGGTAAGTTTTTACAAAATTTTAGCCGAAGTTGTGTACTAATAATCATCAC
829 AGAACAAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACTAA-CAT--TCAC
* *** * *
42358 GGTTTTTGGCTAAAAACACATTTCG-GAGTCCCGACTCAATTTTGCAT-ATTTTTTGCGCA-AAT
881 GGTTTTTTGCTAAAAACGTGTTTCGAG-GCCCCGACTCAGTTTTGCATGA-TTTTTG-GCAGAAT
*
42420 -ACTCCTTGAAACATCTATAT
943 GACTCCTTGAAA-ATCCATAT
** * ** * * *
42440 TCAT-TGAAAGAAATCTCAGCCACATTGGTTATAAGAATTTGTTTTTACGTGCATCTGAATTTTG
1 TCATCT-AACCAAATCTCAGCCAAATTGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * * **
42504 TTTTGATTTAATTAGAAATTACTTCGGAAAAAAATGTAAAAAAACGATATTAGAAGCAAGAAAAA
64 TTTCGATTTAATTAGAAATAAATTTGGAAAAAAATG--GAAAAACGATATTAGAAGCGTGAAAAA
* * * * * *
42569 CCCATCAATCTTTTTGGCGTTGAATTATATA-TTTTTTCTGAGTGTCGTGGTAAAAAATTGAGAA
127 CCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGCAAAAAATT-A-AG
* * * * * * *
42633 AAAAACTTTTCGGGTCAGTTTTTAACCAAAATCGTGTACTAACCATCACAGTTTTTGGATAAAAA
190 AAAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATCACGGTTTTTTGCTAAAAA
* * * * * * *
42698 CGAGTTTCGGGGCATCGATTCAGTTTTGCATCATTTTTGGCA-AAAGGACTCCTTGAAATATATT
254 CGCGTTTCGAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAA-GACTCCTTGAAATATCTA
* * *
42762 TAATCATATAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCT
318 TATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCT
* *
42827 TGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAA
383 TGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG
* * *
42892 CCCGTCAATCTTTTCGGCATTGAATTATATATTTTTTCGAGTATTGTGGCAAAATATTGTGAACA
448 CCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCGAGTATTGTGGCAAAAAATTGAGAACA
*
42957 AATTTTTCGGGTCAGTTTTTAGCCGCAATCGTGTACTAACATTCACGGTTTTTTTGCTAAAAACG
513 AATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACATTCACGG-TTTTTTGCTAAAAACG
* *
43022 TGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTTGAAAAGTCCATAT
577 CGTTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTTGAAAA-TCCATAT
* *
43087 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAAGATTTGTTTTTACGAGCATATGAATCTTGT
641 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
43152 TTCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCTC
706 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
*
43217 GTCAATCTTTTTGACATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
771 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* *
43282 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGTTAAAAACATG
836 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTG
*
43347 TTTCGAGGCCCCGACTCAGTTTTGCATTATTTTTGGCAGAATGACTCCTTGATAAATCCATAT
901 TTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGA-AAATCCATAT
* *
43410 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGTATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATT-GAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * *
43475 TTCGATTTAATTAGAAATAAATTTGGGAAAAAATGGAAAAACGATATTAGAAGCGTTAAAAGCCC
65 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCC
*
43540 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
130 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGCAAAAAATTAAGAA-AA
*
43605 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTGTTTGCTAAAAACGT
194 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACA-TCACGGTTT-TTTGCTAAAAACGC
* * * * *
43670 GTTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATT
257 GTTTCGAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATT
*
43735 CATCTAACGAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
322 CATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
*
43800 TCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCG
387 TCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCG
*
43865 TCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAA
452 TCAATCTTTTTGGCATTGAATTATATA-TTTTTT-CGAGTATTGTGGCAAAAAATTGAGAACAAA
* * * *
43930 TTTTTCGAGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCAAAAAACGTGT
515 TTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGCGT
*
43995 TTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATTCA
580 TTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTTG-AAAATCCATATTCA
*
44060 TCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGTTTC
644 TCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTC
* *
44125 GATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGCC
709 GATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTC
* *
44190 AATCTTTTTGGCATTGAATTATATATTTCTTTCCTAGTATTGTGGCAAAAAATTAAGAACAAATT
774 AATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAATT
* * *
44255 TTTCGGGTCAATTTTTTGCCGAAATCGTGTACGT--TATTCACGGTTTTTTGCAAAAAACGTGTT
839 TTTCGGGTCAATTTTTAGCCGAAATCGTGTAC-TAACATTCACGGTTTTTTGCTAAAAACGTGTT
** *
44318 TCGAGGCTTCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATAT
903 TCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCCATAT
* *
44379 TCATCTAACCAAATCTCAGGCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTAT
1 TCATCTAACCAAATCTCAGCCAAATT-GAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * *
44444 TTCCATTTAATTAGAAATAAATTTGGAAAAAAATGGGAAAACGATATTAGAAGCGTGAAAAGCCC
65 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCC
*
44509 GTCAATCTTTTTGGCATTGAATTATAT-TTTTTTT-GGAGTATTGTGGCAAAAAAATTAAGAACA
130 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGC-AAAAAATTAAGAA-A
* *
44572 TATTTTTCGGGTCAATTTTTAGCCGAAAATCGTGTACTAACTTTCA-GAGTTTTTTGCTAAAAAC
193 AATTTTTCGGGTCAATTTTTAGCCG-AAATCGTGTACTAAC-ATCACG-GTTTTTTGCTAAAAAC
** * * * * *
44636 TTGTTTCGAGGCCTTGACTCAGTTTTGCATGATATTTGGCAGAATGACTCCTTGAAAAATCCATA
255 GCGTTTCGAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATA
*
44701 TTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTG
320 TTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
*
44766 TTTCGATTTAGTTAGAAATAAATTTGGAAAAAAATGGAAAAAAC-ATATTAGAAGCGTGAAAAGC
385 TTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAGC
* * * *
44830 CCGTCAATCTTTTTTGAATTGAATTATATTTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACA
449 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTT-CGAGTATTGTGGCAAAAAATTGAGAACA
* * * *
44895 AATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAATAATATTCACGGTTTTTTGCTAAAAACGT
513 AATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGC
* * * *
44960 GTTTTCGAGGCTCCGGCTCAGTTTTGCATGATTTTTAGCAGAATCACTCCTTCGAAAATCCATAT
578 G-TTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTT-GAAAATCCATAT
**
45025 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTATAAGCATCTGAATCTTGT
641 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* **
45090 TTC-ATTTTAATTGGAAACT-AATTTTTAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
706 TTCGA-TTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
*
45153 CCGTCAATATTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAAC
769 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAAC
* * * *
45218 AAATTTTGCGTGTCAATTTTTAGCCGAAATCGTATACTAACATTCACGGTTTTTTGCTAAAAACT
834 AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACG
* *
45283 TGTTTCGAGGCCCCGACTCAGTTTTACATGATATTTGGCAGAATGACTCCTTGAAAAATCCATAT
899 TGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTG-AAAATCCATAT
*
45348 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATTTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATT-GAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
45413 TTCGATTTAATTAGAAATAAATTTGCGAAAAAATATGGAAAAACGATATTAAAAGCGTGAAAAGC
65 TTCGATTTAATTAGAAATAAATTTG-GAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAAC
* *
45478 CCGTCAATCCTTTTGGCATTGAA-T-TATATTTTTTTCCGAGTATTGTGG-AAAAGAATTAAGAA
128 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGCAAAA-AATTAAGAA
45540 CAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACACATTCACGGTTTTTTGCTAAAA
192 -AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACT-A-ACA-TCACGGTTTTTTGCTAAAA
* * * * *
45605 ACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCA
253 ACGCGTTTCGAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTA
45670 TATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCT
318 TATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCT
45735 TGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG
383 TGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG
* * * * *
45800 CCCGTCAATCTTTTTGGCGTTGATTTATATATTTTTTCTATGTAATATGGCAAAAAATTGAGGAA
448 CCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCGA-GTATTGTGGCAAAAAATTGA-GAA
* *
45865 -AAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAGTCGTGTACTAAAAATCATT-ACGGT
511 CAAATTTTTCGGGTCAG----T------TTTTAGCCGAAATCGTGTACT---AA-CATTCACGG-
* * * * * *
45928 TTTTTTGGTAAAAACGCATTTCG-GAGTCCTGGCTCAATTTTGCTTAT-TTTTTTGTGC-AAAT-
561 TTTTTTGCTAAAAACGCGTTTCGAG-GCCCCGGCTCAGTTTTGC--ATGATTTTTG-GCAAAATG
* * * ** ** *
45989 ACTCCTTAAAATATCTATATTCATCGAAAGAAATCTCAG-CAACATT-GGTTATAAAGATTTGTT
622 ACTCCTTGAAA-ATCCATATTCATCTAACCAAATCTCAGCCAA-ATTCGAAT-TAAGGATTTGTT
* * * * * *
46052 TTTACGTGCTTCTGAATCTTGTTTCGATTTAATTAGAAATTAGTTCGGAAAAAAAAATGTAAAAA
684 TTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTTGG--AAAAAAATGGAAAAA
** * ** * *
46117 CGATATTAGAAGCAAGAAAAACCTATCAATCTTTTTGTCGTTGAATTATATATTTTTTT--GAGT
747 CGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGT
* * * * * * *
46180 GTCGTGGCAAAAAATTGAGAAAAAACTTTTCGGATAAGTTTTTGCAAAATTTTAGCCGAAGTCGT
812 ATTGTGGCAAAAAATTAAGAACAAATTTTTCGG----G----T-C-AATTTTTAGCCGAAATCGT
* * * ** * * * *
46245 GTATTAA-ATCATCACAGTTTTTGGCTAAAAACGCATTTCG-GAGTCCTGGCTCAATTTTGCATA
867 GTACTAACAT--TCACGGTTTTTTGCTAAAAACGTGTTTCGAG-GCCCCGACTCAGTTTTGCAT-
* *
46308 TATTTTTGCGCA-AAT-ACTCCTT-AAAATGTCTATAT
928 GATTTTTG-GCAGAATGACTCCTTGAAAA--TCCATAT
** * ** * * *
46343 TCAT-TGAAAGAAATCTCAGCCACATTGGTTATAAAGATTTGTTTTTACGTGCTTCTGAATCTTG
1 TCATCT-AACCAAATCTCAGCCAAATTGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * *** * * * *
46407 TTTCGATTTAATTAAAAATTAATTCAAAAAAAAAT-TAAAAATGATATTAGAAGCATGAAAACCC
64 TTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACC
* * * * * * * *
46471 CTTCAATTTTTTTGGCGTTGAATTATATA-TTTTTT-T-AGTATCGTGACAAAGAATTGAGGTAA
129 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGCAAAAAATT-AAGAAA
* * * * *
46533 AATTTTTCGGGT-TAGTTTTAGCCGAAATCGTGTACAAACCATCACGGTATTTGGCTAAAAACGC
193 AATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATCACGGTTTTTTGCTAAAAACGC
* * * * *
46597 GTTTC--GGTCTCGACTCAGTTTTGCATGGTTTTTGGCAAAAAGACTCCTTGAAATATTTATAGT
257 GTTTCGAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATT
* * * * * * *
46660 CATCTAATCAAATCTTAGCCACATTGGATTTACGGTTTTGTTTTTACGAGCATCTGAATCTTGTT
322 CATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
* * * * *
46725 TCAATTTATTTAGAAATAAATTTGG-AAAAAATGGAAAAACTATATTGGAAGCGTGAAAAAACCC
387 TCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTG-AAAAGCCC
* ** * **
46789 TTCCTTATTTTTGGTGTTGAATTATATA-TTTTTCTGAGTATTGTGGCAAAAAATTGAGAA-AAA
451 GTCAATCTTTTTGGCATTGAATTATATATTTTTTC-GAGTATTGTGGCAAAAAATTGAGAACAAA
* * * *
46852 TGTTTTCGAGTTAGTTTTTAGCCGAAATCGTGCACTAACCA-CCACGGTTTTTTGCTAAAAACGC
515 T-TTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAAAACGC
* * * *** * *
46916 GTTTCGTA-GCCCCGACTCAATTTTGAATGATTTTTGGCGTGA-GAACTGCTTGAAATATCTATA
578 GTTTCG-AGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAAAATG-ACTCCTTGAAA-ATCCATA
* * * * * *
46979 TTCATCGAACCAAATC-CTAACCACATT-GGATATAACGATTTGTTTTTACGAGTATCTGAATCT
640 TTCATCTAACCAAATCTC-AGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCT
* * * * * * * * *
47042 TATTTTGATTTAATTAGAAATTAA-TTCGAAAAAAATGG-GAAATGATATTAGTAGTGTGAAAAA
703 TGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG
* * * * *
47105 CCCTTCAATCTTCTTGGCATTGAATTATATATTTGTTAT--GAGTATTGTGGCAAAGAATTGAGA
768 CCCGTCAATCTTTTTGGCATTGAATTATATATTT-TTTTCCGAGTATTGTGGCAAAAAATTAAGA
* ** * * *
47168 AAAAAAATTCCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCA-TCACGG-TTTTTGCCTAAA
832 ACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTG-CTAAA
* * * * * **
47231 AACGTGTTTCGGGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATTT
895 AACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAA-ATCC
*
47296 TTAT
959 ATAT
** * * *
47300 TCATGGAACCAAATCTCAGTCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
47365 TTCGATTTAATTAGAAACT-AATTTGG--AAAAA---AAAAACGATATTAGAAGCGTGAAAAACC
65 TTCGATTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACC
* * * * * ** * *
47424 CTTCCATATTTTTGGCATTGGATTATATA-TTTTTTCTAAGTATTGTAACCAAAAAAATGAGGAA
129 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGT-GGC-AAAAAATTAAGAA
* * * * *
47488 AAACTTCTCGGGTAAGTTTTTGCAAAATTTTAGCTGAAATCTTGTACTAACATCACGG-TTTTTG
192 AAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACTAACATCACGGTTTTTTG
* ** * * * *
47552 TCTAAAAATGCG-TTCTGAAACCTCGGCTCAATTTTGCATGATTTTTGGTACAAAGACTCCTTGA
247 -CTAAAAACGCGTTTC-GAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGA
* * ** * * *
47616 AATATTTTTATTCATGGAACCAAATCTCAGTCACATT-GGATATAAGGATTTGTTTTTACGAGCA
310 AATATCTATATTCATCTAACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCA
* * *
47680 TCTAAATCTTGTTTCGATTTAATTAGAAACT-AATTTGG-AAAAAGTGGAAAAACGATATTACAA
374 TCTGAATCTTGTTTCGATTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAA
* * * *
47743 GTGTGAAAAGCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTCTTTGAGTATTGTGGAAAAA
438 GCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTTT-TTCGAGTATTGTGGCAAAA
* * *
47808 AATTGAGAAAAAAAACTTTTCGGGTCGGTTTTTAGCCGAAATCGTGTA-T---A--CA-------
502 AATTGAG--AACAAATTTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTT
* * * * **
47860 -----AAAAACGTGTTCCG-GGTCCACGGCTCTA-TTTTGCTTGATTTTTTGGCGTCGAA--ACT
565 TTGCTAAAAACGCGTTTCGAGG-CCCCGGCTC-AGTTTTGCATGA-TTTTTGGC--AAAATGACT
* ** * * * * *
47916 CCTTGATATATCTTTATTCATCTAATCAAATCTTAGCTACATTCGATTTAAGGATTTGTTTTTAC
625 CCTTGA-AAATCCATATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTAC
* * * * * *
47981 GTA-TATCTGAATCTTGTTTCGGTTTAATTAGAAATTAATTCAGAAAAAAAAAAT-GAATAACGA
689 G-AGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-TG--GAAAAAAATGGAAAAACGA
* * *
48044 TATTAAAAGCGTGAAAAGTCC-TCCAATCTTTTTGG-AGTTGAATTATATATATTTTAT--GAGT
750 TATTAGAAGCGTGAAAAGCCCGT-CAATCTTTTTGGCA-TTGAATTATATAT-TTTTTTCCGAGT
* * *
48105 ATTTTTGCCAAAAATTAAGGAA-AAATTTTTCGGGTC-ATTTTTA
812 ATTGTGGCAAAAAATTAA-GAACAAATTTTTCGGGTCAATTTTTA
48148 CCATCATGGT
Statistics
Matches: 4929, Mismatches: 592, Indels: 389
0.83 0.10 0.07
Matches are distributed among these distances:
951 1 0.00
952 27 0.01
953 149 0.03
954 6 0.00
955 16 0.00
956 34 0.01
957 214 0.04
958 32 0.01
959 2 0.00
960 3 0.00
964 4 0.00
965 8 0.00
966 18 0.00
967 217 0.04
968 846 0.17
969 741 0.15
970 506 0.10
971 610 0.12
972 39 0.01
973 75 0.02
974 5 0.00
975 35 0.01
976 177 0.04
977 76 0.02
978 43 0.01
979 18 0.00
980 172 0.03
981 43 0.01
982 31 0.01
983 10 0.00
984 140 0.03
985 89 0.02
986 229 0.05
988 27 0.01
989 3 0.00
990 21 0.00
991 25 0.01
992 49 0.01
993 16 0.00
994 36 0.01
995 124 0.03
996 9 0.00
997 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (962 bp):
TCATCTAACCAAATCTCAGCCAAATTGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
TCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCG
TCAATCTTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAT
TTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATCACGGTTTTTTGCTAAAAACGCGTTT
CGAGGCCTCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATC
TAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
TTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAA
TCTTTTTGGCATTGAATTATATATTTTTTCGAGTATTGTGGCAAAAAATTGAGAACAAATTTTTC
GGGTCAGTTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGCGTTTCGAG
GCCCCGGCTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTTGAAAATCCATATTCATCTAACC
AAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAA
TTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTT
TTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAATTTTTCGGG
TCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTGTTTCGAGGCC
CCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAATCCATAT
Found at i:43807 original size:647 final size:644
Alignment explanation
Indices: 41469--48147 Score: 7059
Period size: 647 Copynumber: 10.3 Consensus size: 644
41459 ATACTTTACA
* * * ** * *
41469 TCATCTAACCAAATCTCA-TCAACATTGGATTTAATAATTTGTTTTTACGAGTATCTGAATATTG
1 TCATCTAACCAAATCTCAGCCAA-ATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * * * *
41533 TTTCGATGTAATTAGAAATTAATTCGGAATAAAACGGAAAAACGATATTAGAAGTGTAAAAAACC
65 TTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACC
* * ** * * *
41598 CTTCAATTTTTTTGGTGTTGAATTACATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAA-AA
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* *
41662 ACTTTTT-GGGTC-AGTTTTAGCCGAAATCGTGTACTAACCA-TCACGGTTTTTGGCTAAAAACG
195 A-TTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAAAACG
* * * * * * * *
41724 CGTTCCG-GAGCCACGACTCAATTATGCATGATTTTTGGC-GTAAAGACTTCTTTAAATATCTAT
258 CGTTTCGAG-GCCCCGACTCAATTTTGCATGATTTTTGGCAG-AATGACTCCTTGAAAAATCCAT
* * * * * * ** * *
41787 ATTTATCAAACTAAATCTCAGCCACATTGGATTTAATAATTT-ATTTTACG-GCATATGAATCTT
321 ATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTT
*
41850 GTTTCGATTTAACTAGAAATAAATTTGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG
386 GTTTCGATTTAATTAGAAATAAATTTGG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAG
* * * *
41915 CCCGTCAATATTTTTTGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAATAAC
450 CCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCGAGTATTGTGGCAAAAAATTAAGAAC
* * * * *
41980 AAATTTTTCGGGTTAGTTTTTAGCCGAAATCGGGTACGT---GTT-ACGG-TTTTGGCATAAAAA
515 AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAC-TAACATTCACGGTTTTTTGC-TAAAAA
** * * * * * * *
42040 CACGTTTCGGGGCCCCGGCTCTGTTTTGCATGGTTTTTGGCATAAAGACTCATTGAAATATCTAT
578 CGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAATATCTAT
42105 AAT
643 -AT
* * * * *
42108 T-ATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * *
42172 TTCGATTTAATTAGAAATAAATTCGGAATAAAAAAGG-AAAACTATATT-GAAAGCGTGAAAACC
66 TTCGATTTAATTAGAAATAAATTTGGAA-AAAAATGGAAAAACGATATTAG-AAGCGTGAAAAAC
* * * ** * * * * *
42235 CCAT-AAACATTTTTGGCGTT-TTTTATATATTTTTTCTGAATATTATGGCAAAAATTTGAGGAA
129 CCGTCAATC-TTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATT-AAGAA
* * * * * *
42298 -AAACTATTCGGGTAAGTTTTTACAAAATTTTAGCCGAAGTTGTGTACTAATAATCATCACGGTT
192 CAAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACTAA-CAT--TCACGGTT
* * * *
42362 TTTGGCTAAAAACACATTTCG-GAGTCCCGACTCAATTTTGCAT-ATTTTTTGCGCA-AAT-ACT
244 TTTTGCTAAAAACGCGTTTCGAG-GCCCCGACTCAATTTTGCATGA-TTTTTG-GCAGAATGACT
* * ** * ** *
42423 CCTTGAAACATCTATATTCAT-TGAAAGAAATCTCAGCCACATT-GGTTATAAGAATTTGTTTTT
306 CCTTGAAAAATCCATATTCATCT-AACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTT
* * * * * * *
42486 ACGTGCATCTGAATTTTGTTTTGATTTAATTAGAAATTACTTCGGAAAAAAATGTAAAAAAACGA
369 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATG--GAAAAACGA
** * * * * *
42551 TATTAGAAGCAAGAAAAACCCATCAATCTTTTTGGCGTTGAATTATATA-TTTTTTCTGAGTGTC
432 TATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTC-GAGTATT
* * * * * * *
42615 GTGGTAAAAAATTGAGAAAAAAACTTTTCGGGTCAGTTTTTAACCAAAATCGTGTACTAACCA-T
496 GTGGCAAAAAATTAAG-AACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATT
* * * * * ** * * * *
42679 CACAGTTTTTGGATAAAAACGAGTTTCGGGGCATCGATTCAGTTTTGCATCATTTTTGGCAAAAG
559 CACGGTTTTTTGCTAAAAACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAT
* * *
42744 GACTCCTTGAAATATATTTAA
624 GACTCCTTGAAATATCTATAT
* *
42765 TCATATAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
42830 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAAAAGCGTGAAAAACCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCC
* * **
42895 GTCAATCTTTTCGGCATTGAATTATATATTTTTT-CGAGTATTGTGGCAAAATATTGTGAACAAA
131 GTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAA
* * *
42959 TTTTTCGGGTCAGTTTTTAGCCGCAATCGTGTACTAACATTCACGGTTTTTTTGCTAAAAACGTG
196 TTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGG-TTTTTTGCTAAAAACGCG
* * *
43024 TTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAAAATGACTCCTTGAAAAGTCCATATTC
260 TTTCGAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATTC
* *
43089 ATCTAACCAAATCTCAGCCAAATTCGAATTAAAGATTTGTTTTTACGAGCATATGAATCTTGTTT
325 ATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTT
* *
43154 CGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCTCGT
390 CGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGT
*
43219 CAATCTTTTTGACATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAAT
455 CAATCTTTTTGGCATTGAATTATATATTTTTTT-CGAGTATTGTGGCAAAAAATTAAGAACAAAT
* *
43284 TTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGTTAAAAACATGTT
519 TTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTGTT
* *
43349 TCGAGGCCCCGACTCAGTTTTGCATTATTTTTGGCAGAATGACTCCTTGATAA-ATCCATAT
584 TCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGA-AATATCTATAT
* *
43410 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGTATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * *
43475 TTCGATTTAATTAGAAATAAATTTGGGAAAAAATGGAAAAACGATATTAGAAGCGTTAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCC
43540 GTCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATA-TTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
*
43605 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTGTTTGCTAAAAACGT
195 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTT-TTTGCTAAAAACGC
* *
43670 GTTTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATT
259 GTTTCGAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATT
*
43735 CATCTAACGAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
324 CATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
*
43800 TCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCG
389 TCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCG
43865 TCAATCTTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAA
454 TCAATCTTTTTGGCATTGAATTATATATTTTTTT-CGAGTATTGTGGCAAAAAATTAAGAACAAA
* *
43930 TTTTTCGAGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCAAAAAACGTGT
518 TTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTGT
* * *
43995 TTCGAGGCCCCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATAT
583 TTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAATATCTATAT
*
44057 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
44122 TTCGATTAAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCC
* *
44187 GCCAATCTTTTTGGCATTGAATTATATATTTCTTTCCTAGTATTGTGGCAAAAAATTAAGAACAA
131 GTCAATCTTTTTGGCATTGAATTATATATTT-TTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* * * *
44252 ATTTTTCGGGTCAATTTTTTGCCGAAATCGTGTACGT--TATTCACGGTTTTTTGCAAAAAACGT
195 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAC-TAACATTCACGGTTTTTTGCTAAAAACGC
** * *
44315 GTTTCGAGGCTTCGGCTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATT
259 GTTTCGAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATT
* *
44380 CATCTAACCAAATCTCAGGCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTATT
324 CATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
* *
44445 TCCATTTAATTAGAAATAAATTTGGAAAAAAATGGGAAAACGATATTAGAAGCGTGAAAAGCCCG
389 TCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCG
* *
44510 TCAATCTTTTTGGCATTGAATTATAT-TTTTTTTGGAGTATTGTGGCAAAAAAATTAAGAACATA
454 TCAATCTTTTTGGCATTGAATTATATATTTTTTTCGAGTATTGTGGC-AAAAAATTAAGAACAAA
* *
44574 TTTTTCGGGTCAATTTTTAGCCGAAAATCGTGTACTAACTTTCA-GAGTTTTTTGCTAAAAACTT
518 TTTTTCGGGTCAATTTTTAGCCG-AAATCGTGTACTAACATTCACG-GTTTTTTGCTAAAAACGT
** * * *
44638 GTTTCGAGGCCTTGACTCAGTTTTGCATGATATTTGGCAGAATGACTCCTTGAAAAATCCATAT
581 GTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAATATCTATAT
*
44702 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATATGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
44767 TTCGATTTAGTTAGAAATAAATTTGGAAAAAAATGGAAAAAAC-ATATTAGAAGCGTGAAAAGCC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAACC
* * *
44831 CGTCAATCTTTTTTGAATTGAATTATATTTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* * *
44896 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTAATAATATTCACGGTTTTTTGCTAAAAACGTG
195 ATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGCG
* * * * *
44961 TTTTCGAGGCTCCGGCTCAGTTTTGCATGATTTTTAGCAGAATCACTCCTTCG-AAAATCCATAT
260 -TTTCGAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTT-GAAAAATCCATAT
**
45025 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTATAAGCATCTGAATCTTGT
323 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* **
45090 TTC-ATTTTAATTGGAAACT-AATTTTTAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
388 TTCGA-TTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
*
45153 CCGTCAATATTTTTGGCATTGAATTATATATTTTTTTCCGAGTATTGTGGCAAAAAATTAAGAAC
451 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTT-CGAGTATTGTGGCAAAAAATTAAGAAC
* * * *
45218 AAATTTTGCGTGTCAATTTTTAGCCGAAATCGTATACTAACATTCACGGTTTTTTGCTAAAAACT
515 AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACG
* * * *
45283 TGTTTCGAGGCCCCGACTCAGTTTTACATGATATTTGGCAGAATGACTCCTTGAAAAATCCATAT
580 TGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAATATCTATAT
*
45348 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATTTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
45413 TTCGATTTAATTAGAAATAAATTTGCGAAAAAATATGGAAAAACGATATTAAAAGCGTGAAAAGC
66 TTCGATTTAATTAGAAATAAATTTG-GAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAAC
*
45478 CCGTCAATCCTTTTGGCATTGAATTATAT-TTTTTTCCGAGTATTGTGG-AAAAGAATTAAGAAC
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAA-AATTAAGAAC
45541 AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACACATTCACGGTTTTTTGCTAAAAA
193 AAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACT-A-ACATTCACGGTTTTTTGCTAAAAA
* *
45606 CGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCAT
256 CGCGTTTCGAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCAT
45671 ATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTT
321 ATTCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTT
45736 GTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
386 GTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGC
* * * * * *
45801 CCGTCAATCTTTTTGGCGTTGATTTATATA-TTTTTTCTATGTAATATGGCAAAAAATTGAGGAA
451 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCGA-GTATTGTGGCAAAAAATT-AAGAA
* * *
45865 -AAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAGTCGTGTACTAAAAATCATT-ACGGT
514 CAAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACT---AA-CATTCACGG-
* ** * * * * *
45928 TTTTTTGGTAAAAACGCATTTCG-GAGTCCTGGCTCAATTTTGCTTAT-TTTTTTGTGCA-AAT-
564 TTTTTTGCTAAAAACGTGTTTCGAG-GCCCCGACTCAGTTTTGC--ATGATTTTTG-GCAGAATG
*
45989 ACTCCTTAAAATATCTATAT
625 ACTCCTTGAAATATCTATAT
* ** ** * * *
46009 TCATCGAAAGAAATCTCAG-CAACATT-GGTTATAAAGATTTGTTTTTACGTGCTTCTGAATCTT
1 TCATCTAACCAAATCTCAGCCAA-ATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTT
* * * * **
46072 GTTTCGATTTAATTAGAAATTAGTTCGGAAAAAAAAATGTAAAAACGATATTAGAAGCAAGAAAA
64 GTTTCGATTTAATTAGAAATAAATTTGG--AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
** * * * * * *
46137 ACCTATCAATCTTTTTGTCGTTGAATTATATATTTTTT-TGAGTGTCGTGGCAAAAAATTGAGAA
127 ACCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAAGAA
* * * * * *
46201 AAAACTTTTCGGATAAGTTTTTGCAAAATTTTAGCCGAAGTCGTGTATTAA-ATCATCACAGTTT
192 CAAATTTTTCGG----G----T-C-AATTTTTAGCCGAAATCGTGTACTAACAT--TCACGGTTT
* * * * * *
46265 TTGGCTAAAAACGCATTTCG-GAGTCCTGGCTCAATTTTGCATATATTTTTGCGCA-AAT-ACTC
245 TTTGCTAAAAACGCGTTTCGAG-GCCCCGACTCAATTTTGCAT-GATTTTTG-GCAGAATGACTC
* * ** * ** *
46327 CTT-AAAATGTCTATATTCAT-TGAAAGAAATCTCAGCCACATT-GGTTATAAAGATTTGTTTTT
307 CTTGAAAA-ATCCATATTCATCT-AACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTT
* * * * *** * *
46389 ACGTGCTTCTGAATCTTGTTTCGATTTAATTAAAAATTAATTCAAAAAAAAAT-TAAAAATGATA
369 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATA
* * * * * *
46453 TTAGAAGCATGAAAACCCCTTCAATTTTTTTGGCGTTGAATTATATATTTTTTT--AGTATCGTG
434 TTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTTTTTTCGAGTATTGTG
* * * * * * *
46516 ACAAAGAATTGAGGTA-AAATTTTTCGGGT-TAGTTTTAGCCGAAATCGTGTACAAACCA-TCAC
499 GCAAAAAATT-AAGAACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCAC
* * * * * * * *
46578 GGTATTTGGCTAAAAACGCGTTTC--GGTCTCGACTCAGTTTTGCATGGTTTTTGGCAAAAAGAC
562 GGTTTTTTGCTAAAAACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGAC
* *
46641 TCCTTGAAATATTTATAG
627 TCCTTGAAATATCTATAT
* * * * * * *
46659 TCATCTAATCAAATCTTAGCCACATTGGATTTACGGTTTTGTTTTTACGAGCATCTGAATCTTGT
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * *
46724 TTCAATTTATTTAGAAATAAATTTGG-AAAAAATGGAAAAACTATATTGGAAGCGTGAAAAAACC
66 TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTG-AAAAACC
* ** * ** * *
46788 CTTCCTTATTTTTGGTGTTGAATTATATA-TTTTTCTGAGTATTGTGGCAAAAAATTGAGAA-AA
130 CGTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAA
* * * * *
46851 ATGTTTTCGAGTTAGTTTTTAGCCGAAATCGTGCACTAACCA-CCACGGTTTTTTGCTAAAAACG
195 AT-TTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTGCTAAAAACG
* * * * *
46915 CGTTTCGTA-GCCCCGACTCAATTTTGAATGATTTTTGGC-GTGA-GAACTGCTTGAAATATCTA
258 CGTTTCG-AGGCCCCGACTCAATTTTGCATGATTTTTGGCAG-AATG-ACTCCTTGAAAAATCCA
* * * * * *
46977 TATTCATCGAACCAAATC-CTAACCACATT-GGATATAACGATTTGTTTTTACGAGTATCTGAAT
320 TATTCATCTAACCAAATCTC-AGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAAT
* * * * * * * *
47040 CTTATTTTGATTTAATTAGAAATTAA-TTCGAAAAAAATGG-GAAATGATATTAGTAGTGTGAAA
383 CTTGTTTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * * * * *
47103 AACCCTTCAATCTTCTTGGCATTGAATTATATATTTGTTAT-GAGTATTGTGGCAAAGAATTGAG
448 AGCCCGTCAATCTTTTTGGCATTGAATTATATATTT-TTTTCGAGTATTGTGGCAAAAAATTAAG
* ** * * *
47167 AAAAAAAATTCCGGGTCAGTTTTTAGCCGAAATCGTGTAATAACCA-TCACGG-TTTTTGCCTAA
512 AACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAA-CATTCACGGTTTTTTG-CTAA
* * * * * *
47230 AAACGTGTTTCGGGGCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATT
575 AAACGTGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAATATC
*
47295 TTTAT
640 TATAT
** * * *
47300 TCATGGAACCAAATCTCAGTCACATT-GGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTG
1 TCATCTAACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTG
47364 TTTCGATTTAATTAGAAACT-AATTTGG--AAAAA---AAAAACGATATTAGAAGCGTGAAAAAC
65 TTTCGATTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAAC
* * * * ** ** * *
47423 CCTTCCATATTTTTGGCATTGGATTATATATTTTTTCTAAGTATTGTAACCAAAAAAATGAGGAA
129 CCGTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGT-GGC-AAAAAATTAAGAA
* * * * *
47488 -AAACTTCTCGGGTAAGTTTTTGCAAAATTTTAGCTGAAATCTTGTACTAACA-TCACGG-TTTT
192 CAAATTTTTC-GG---G----T-C-AATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTT
* ** * * * * *
47550 TGTCTAAAAATGCG-TTCTGAAACCTCGGCTCAATTTTGCATGATTTTTGGTACAAAGACTCCTT
247 TG-CTAAAAACGCGTTTC-GAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTT
* *** ** * * *
47614 GAAATATTTTTATTCATGGAACCAAATCTCAGTCACATT-GGATATAAGGATTTGTTTTTACGAG
310 GAAAAATCCATATTCATCTAACCAAATCTCAGCCAAATTCGAAT-TAAGGATTTGTTTTTACGAG
* * *
47678 CATCTAAATCTTGTTTCGATTTAATTAGAAACT-AATTTGG-AAAAAGTGGAAAAACGATATTAC
374 CATCTGAATCTTGTTTCGATTTAATTAGAAA-TAAATTTGGAAAAAAATGGAAAAACGATATTAG
* * *
47741 AAGTGTGAAAAGCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTCTTT-GAGTATTGTGGAA
438 AAGCGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATATTTT-TTTCGAGTATTGTGGCA
* * * **
47805 AAAAATTGAGAAAAAAAACTTTTCGGGTCGGTTTTTAGCCGAAATCGTGTA-T---A--CA----
502 AAAAATT-A-AGAACAAATTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGT
* * * * *
47860 --------AAAAACGTGTTCCG-GGTCCACGGCTCTA-TTTTGCTTGATTTTTTGGCGTCGAA--
565 TTTTTGCTAAAAACGTGTTTCGAGG-CCCCGACTC-AGTTTTGCATGA-TTTTTGGC--AGAATG
* *
47913 ACTCCTTGATATATCTTTAT
625 ACTCCTTGAAATATCTATAT
* * * * * *
47933 TCATCTAATCAAATCTTAGCTACATTCGATTTAAGGATTTGTTTTTACGTA-TATCTGAATCTTG
1 TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACG-AGCATCTGAATCTTG
* * * * * *
47997 TTTCGGTTTAATTAGAAATTAATTCAGAAAAAAAAAAT-GAATAACGATATTAAAAGCGTGAAAA
65 TTTCGATTTAATTAGAAATAAATT-TG--GAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
** * ** * * *
48061 GTCC-TCCAATCTTTTTGG-AGTTGAATTATATATATTTTATGAGTATTTTTGCCAAAAATTAAG
127 ACCCGT-CAATCTTTTTGGCA-TTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAA-
48124 GAA-AAATTTTTCGGGTC-ATTTTTA
189 GAACAAATTTTTCGGGTCAATTTTTA
48148 CCATCATGGT
Statistics
Matches: 5231, Mismatches: 608, Indels: 413
0.84 0.10 0.07
Matches are distributed among these distances:
628 6 0.00
630 1 0.00
631 3 0.00
632 29 0.01
633 98 0.02
634 4 0.00
635 5 0.00
636 101 0.02
637 201 0.04
638 192 0.04
639 82 0.02
640 68 0.01
641 128 0.02
642 3 0.00
643 13 0.00
644 116 0.02
645 813 0.16
646 509 0.10
647 1111 0.21
648 457 0.09
649 61 0.01
650 139 0.03
651 54 0.01
652 88 0.02
653 50 0.01
654 70 0.01
655 35 0.01
656 21 0.00
657 36 0.01
658 200 0.04
659 23 0.00
660 13 0.00
661 201 0.04
662 24 0.00
663 6 0.00
665 1 0.00
666 2 0.00
667 26 0.00
668 3 0.00
669 61 0.01
670 143 0.03
671 31 0.01
672 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (644 bp):
TCATCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCC
GTCAATCTTTTTGGCATTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTAAGAACAAA
TTTTTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGCGT
TTCGAGGCCCCGACTCAATTTTGCATGATTTTTGGCAGAATGACTCCTTGAAAAATCCATATTCA
TCTAACCAAATCTCAGCCAAATTCGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTC
GATTTAATTAGAAATAAATTTGGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCCGTC
AATCTTTTTGGCATTGAATTATATATTTTTTTCGAGTATTGTGGCAAAAAATTAAGAACAAATTT
TTCGGGTCAATTTTTAGCCGAAATCGTGTACTAACATTCACGGTTTTTTGCTAAAAACGTGTTTC
GAGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAATGACTCCTTGAAATATCTATAT
Found at i:57212 original size:50 final size:50
Alignment explanation
Indices: 57132--57232 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
57122 CTACCACTTC
57132 AACACATTAAACACAATCAATTTTGTAATTAGTGCTCAAAGTAGAAATGG
1 AACACATTAAACACAATCAATTTTGTAATTAGTGCTCAAAGTAGAAATGG
* *
57182 AACATATTAAACACAATCGATTTTGTAATTAGTGCTCAAAGTAGAAATGG
1 AACACATTAAACACAATCAATTTTGTAATTAGTGCTCAAAGTAGAAATGG
57232 A
1 A
57233 TAGTAAATCA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.29
Consensus pattern (50 bp):
AACACATTAAACACAATCAATTTTGTAATTAGTGCTCAAAGTAGAAATGG
Found at i:57255 original size:50 final size:49
Alignment explanation
Indices: 57139--57256 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 49
57129 TTCAACACAT
* *
57139 TAAACACAATC-AATTTTGTAATTAGTGCTCAAAGTAGAAATGGAACATAT
1 TAAACAAAATCGAATTTTGTAATTAGTGCTCAAAGTAGAAATGG-A-ATAG
*
57189 TAAACACAATCG-ATTTTGTAATTAGTGCTCAAAGTAGAAATGG-ATAG
1 TAAACAAAATCGAATTTTGTAATTAGTGCTCAAAGTAGAAATGGAATAG
57236 TAAATCATGAAAT-GAATTTTG
1 TAAA-CA--AAATCGAATTTTG
57257 GGCAGGCAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
47 7 0.11
48 2 0.03
49 1 0.02
50 51 0.84
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.31
Consensus pattern (49 bp):
TAAACAAAATCGAATTTTGTAATTAGTGCTCAAAGTAGAAATGGAATAG
Found at i:59420 original size:19 final size:19
Alignment explanation
Indices: 59366--59423 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
59356 CGCTGCTCTA
*
59366 ATAATCTCATCTATATAGT
1 ATAATCTCATCTATATAGC
* *
59385 ATTTAATTTGATCTATATAGC
1 A--TAATCTCATCTATATAGC
*
59406 ATAATCTCATTTATATAG
1 ATAATCTCATCTATATAG
59424 TACCTGAACA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (19 bp):
ATAATCTCATCTATATAGC
Found at i:64185 original size:31 final size:31
Alignment explanation
Indices: 64145--64309 Score: 119
Period size: 31 Copynumber: 5.5 Consensus size: 31
64135 GTTGGCTAAT
64145 TGCTCAAATAAGGGCCTAATGTTTGTCAAAA
1 TGCTCAAATAAGGGCCTAATGTTTGTCAAAA
* * ** * **
64176 TACTCAAATAAGGCCCCGATCTTT-T-AATT
1 TGCTCAAATAAGGGCCTAATGTTTGTCAAAA
* *
64205 TGGCT-AAATAAGGGCCTAACGTTTGCCAAAA
1 T-GCTCAAATAAGGGCCTAATGTTTGTCAAAA
* * **
64236 TGCTCAAATAAGGGCCTGATCTTT-T-AATT
1 TGCTCAAATAAGGGCCTAATGTTTGTCAAAA
* *
64265 TGGC-CAAATAAGGGCCTAACG-TTATCGAAAA
1 T-GCTCAAATAAGGGCCTAATGTTTGTC-AAAA
64296 TGCTCAAATAAGGG
1 TGCTCAAATAAGGG
64310 TCTGGCATCA
Statistics
Matches: 98, Mismatches: 27, Indels: 18
0.69 0.19 0.13
Matches are distributed among these distances:
28 2 0.02
29 35 0.36
30 10 0.10
31 51 0.52
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (31 bp):
TGCTCAAATAAGGGCCTAATGTTTGTCAAAA
Found at i:64243 original size:60 final size:60
Alignment explanation
Indices: 64149--64308 Score: 241
Period size: 60 Copynumber: 2.7 Consensus size: 60
64139 GCTAATTGCT
* * *
64149 CAAATAAGGGCCTAATGTTTGTCAAAATACTCAAATAAGGCCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGCCCCGATCTTTTAATTTGGC
* * *
64209 TAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGCCCCGATCTTTTAATTTGGC
*
64269 CAAATAAGGGCCTAACGTTAT-CGAAAATGCTCAAATAAGG
1 CAAATAAGGGCCTAACGTT-TGCCAAAATGCTCAAATAAGG
64309 GTCTGGCATC
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
60 90 0.99
61 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTTGCCAAAATGCTCAAATAAGGCCCCGATCTTTTAATTTGGC
Found at i:64280 original size:29 final size:29
Alignment explanation
Indices: 64180--64281 Score: 91
Period size: 29 Copynumber: 3.4 Consensus size: 29
64170 TCAAAATACT
* *
64180 CAAATAAGGCCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTGATCTTTTAATTTGGC
* * * **
64209 TAAATAAGGGCCT-AACGTTTGCCAAAAT-GC
1 CAAATAAGGGCCTGATC-TTT--TAATTTGGC
64239 TCAAATAAGGGCCTGATCTTTTAATTTGGC
1 -CAAATAAGGGCCTGATCTTTTAATTTGGC
64269 CAAATAAGGGCCT
1 CAAATAAGGGCCT
64282 AACGTTATCG
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
28 2 0.04
29 29 0.53
30 4 0.07
31 18 0.33
32 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (29 bp):
CAAATAAGGGCCTGATCTTTTAATTTGGC
Found at i:64389 original size:31 final size:29
Alignment explanation
Indices: 64351--64458 Score: 94
Period size: 31 Copynumber: 3.6 Consensus size: 29
64341 AACTGATGTC
*
64351 AGGCCCTTATTTGAGCATTTTCGATAACGTT
1 AGGCCCTTATTTGAGCATTTT-GA-AAAGTT
** *
64382 AGGCCCTTATTTG-GCCAAATT-AAAAGATC
1 AGGCCCTTATTTGAG-CATTTTGAAAAG-TT
* *
64411 AGGGCCTTATTTGAGCATTTTGGCAAATGTT
1 AGGCCCTTATTTGAGCATTTT-G-AAAAGTT
64442 AGGCCCTTATTTGAGCA
1 AGGCCCTTATTTGAGCA
64459 ATTAACCTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
28 3 0.05
29 18 0.30
30 2 0.03
31 34 0.56
32 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (29 bp):
AGGCCCTTATTTGAGCATTTTGAAAAGTT
Found at i:76750 original size:36 final size:36
Alignment explanation
Indices: 76703--76772 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
76693 TTCAATAACC
* *
76703 TTACATCTTTTGTGATTTTGGTTATCATATTTCTTA
1 TTACATCTTTTGTAATTTTGATTATCATATTTCTTA
*
76739 TTACATCTTTTGTAATTTTGATTATTATATTTCT
1 TTACATCTTTTGTAATTTTGATTATCATATTTCT
76773 CCAAAATCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.21, C:0.10, G:0.09, T:0.60
Consensus pattern (36 bp):
TTACATCTTTTGTAATTTTGATTATCATATTTCTTA
Found at i:77835 original size:25 final size:24
Alignment explanation
Indices: 77801--77847 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
77791 ACATTTGCAC
77801 AAATACCTAAGAATTTGAATTAAAA
1 AAATACCTAAGAATTT-AATTAAAA
*
77826 AAATATCTAAGAATTTAATTAA
1 AAATACCTAAGAATTTAATTAA
77848 TGTAAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (24 bp):
AAATACCTAAGAATTTAATTAAAA
Found at i:86710 original size:56 final size:56
Alignment explanation
Indices: 86624--86736 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
86614 CACTTCACAC
86624 CAATATTTGGCCTTTGGCAAAACAGAGTGTGCTCTGTTCTGATCATCACTCTGTTT
1 CAATATTTGGCCTTTGGCAAAACAGAGTGTGCTCTGTTCTGATCATCACTCTGTTT
86680 CAATATTTGGCCTTTGGCAAAACAGAGTGTGCTCTGTTCTGATCATCACTCTGTTT
1 CAATATTTGGCCTTTGGCAAAACAGAGTGTGCTCTGTTCTGATCATCACTCTGTTT
86736 C
1 C
86737 TTACTTTATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (56 bp):
CAATATTTGGCCTTTGGCAAAACAGAGTGTGCTCTGTTCTGATCATCACTCTGTTT
Found at i:93313 original size:19 final size:20
Alignment explanation
Indices: 93289--93346 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
93279 CTGTTTGACA
93289 ACTGTACAGATAAGATTA-C
1 ACTGTACAGATAAGATTAGC
* *
93308 ACTGTACAGATTAGATTATGT
1 ACTGTACAGATAAGATTA-GC
*
93329 ACTGTACAGATGAGATTA
1 ACTGTACAGATAAGATTA
93347 TTAGAGCAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
ACTGTACAGATAAGATTAGC
Found at i:93334 original size:21 final size:20
Alignment explanation
Indices: 93289--93347 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 20
93279 CTGTTTGACA
93289 ACTGTACAGATAAGATTA-C
1 ACTGTACAGATAAGATTATC
* *
93308 ACTGTACAGATTAGATTATGT
1 ACTGTACAGATAAGATTAT-C
*
93329 ACTGTACAGATGAGATTAT
1 ACTGTACAGATAAGATTAT
93348 TAGAGCAGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
19 17 0.49
21 18 0.51
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (20 bp):
ACTGTACAGATAAGATTATC
Found at i:98293 original size:31 final size:31
Alignment explanation
Indices: 98247--98312 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
98237 TTGTAGTTAC
* * *
98247 TTGACTCAATTTTATGAGTATA-ACAACTAAA
1 TTGACCCAATCTTATGAATATATA-AACTAAA
*
98278 TTGACCCAATCTTATGAATATATAGACTAAA
1 TTGACCCAATCTTATGAATATATAAACTAAA
98309 TTGA
1 TTGA
98313 TCACTTTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.35
Consensus pattern (31 bp):
TTGACCCAATCTTATGAATATATAAACTAAA
Found at i:106372 original size:31 final size:31
Alignment explanation
Indices: 106331--106410 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
106321 TGTTTCAAAA
*
106331 GCCACATGTCACTTTTTGAAACACATGACAT
1 GCCACATGTCACTTTTTGAAACACACGACAT
* **
106362 GCCACGTGTCA-TTTTTGGGTACACACGACAT
1 GCCACATGTCACTTTTT-GAAACACACGACAT
**
106393 GATACATGTCACTTTTTG
1 GCCACATGTCACTTTTTG
106411 GTAGACGTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 5 0.12
31 30 0.75
32 5 0.12
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (31 bp):
GCCACATGTCACTTTTTGAAACACACGACAT
Found at i:106430 original size:31 final size:31
Alignment explanation
Indices: 106395--106481 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
106385 CACGACATGA
* * *
106395 TACATGTCACTTTTTGGTAGACGTGTCGTGC
1 TACATGTCGCTTTTTGGTACACGTGGCGTGC
*
106426 TACATGTCGCTTTTTGGTACACTTGGCGTGC
1 TACATGTCGCTTTTTGGTACACGTGGCGTGC
* *
106457 TGCATGTCGCTTTTTTTGTACACGT
1 TACATGTCGC-TTTTTGGTACACGT
106482 AGCATGCCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 36 0.75
32 12 0.25
ACGTcount: A:0.14, C:0.21, G:0.24, T:0.41
Consensus pattern (31 bp):
TACATGTCGCTTTTTGGTACACGTGGCGTGC
Found at i:117990 original size:46 final size:46
Alignment explanation
Indices: 117923--118012 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
117913 ATACTTACAC
117923 CACCTCATACTATATATGATTCCTTTAGTACTTTGCACAATCTTTG
1 CACCTCATACTATATATGATTCCTTTAGTACTTTGCACAATCTTTG
117969 CACCTCATACTATATATGATTCCTTTAGTACTTTGCACAATCTT
1 CACCTCATACTATATATGATTCCTTTAGTACTTTGCACAATCTT
118013 GTTCTTTTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (46 bp):
CACCTCATACTATATATGATTCCTTTAGTACTTTGCACAATCTTTG
Done.