genome.fa.s16436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016436.1 Corchorus olitorius cultivar O-4 contig16469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227897

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14931--14976	24	1.9	24	95	0	83	43	23	15	17	1.87
37171--37231	31	2.0	31	86	0	86	31	22	14	31	1.94
43829--43952	59	2.1	61	93	3	216	20	16	11	50	1.76
46639--46665	13	2.1	13	100	0	54	29	0	7	62	1.22
47149--50137	332	9.1	330	82	6	3322	34	15	15	34	1.89
47147--50137	653	4.6	652	83	6	3137	34	15	15	34	1.89
50128--55307	650	7.9	647	77	9	4344	34	15	15	33	1.90
50130--55307	321	15.9	331	78	8	4778	34	15	15	33	1.90
57685--57716	2	16.0	2	100	0	64	50	0	0	50	1.00
64345--64384	20	2.0	20	100	0	80	35	25	25	15	1.94
66358--66462	53	2.0	53	88	0	156	16	29	25	28	1.97
84484--84511	6	4.7	6	100	0	56	50	17	14	17	1.79
96991--97082	46	2.0	46	97	0	175	39	9	15	35	1.80
104559--104636	39	2.0	39	92	0	129	34	33	12	19	1.90
104728--104752	12	2.1	12	100	0	50	64	16	8	12	1.49
104931--104969	20	1.9	21	84	5	53	58	2	2	35	1.25
105754--105793	21	2.0	20	85	5	53	5	15	7	72	1.24
115294--115352	26	2.3	26	100	0	118	72	3	10	13	1.22
115294--115366	26	2.8	26	89	6	87	71	2	10	15	1.25
119621--119647	1	27.0	1	100	0	54	100	0	0	0	0.00
125166--125195	1	30.0	1	100	0	60	100	0	0	0	0.00
130146--130413	135	2.0	130	85	3	356	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141804--142170	183	2.0	183	91	1	601	29	22	24	22	1.99
167505--167652	48	3.1	48	88	3	183	35	19	29	15	1.93
174143--174225	41	2.0	41	100	0	166	21	31	26	20	1.98
175095--175124	9	3.3	9	95	0	51	60	6	0	33	1.23
197958--198028	36	2.0	36	97	0	133	39	22	7	30	1.81
200061--200101	19	2.2	19	100	0	82	19	34	19	26	1.96
200149--200180	16	1.9	17	93	6	57	37	0	0	62	0.95
201663--201712	24	2.1	24	100	0	100	20	16	12	52	1.75
208595--208783	99	1.9	99	97	0	360	21	16	10	51	1.73
210766--210940	50	3.5	50	92	0	296	5	32	25	36	1.80
211625--211651	12	2.2	12	100	0	54	33	0	33	33	1.58
211904--212025	61	2.0	61	93	0	208	42	8	18	30	1.80
211965--215339	330	10.1	332	84	5	4275	35	17	16	31	1.91
213158--213219	31	2.0	32	90	3	99	48	20	6	24	1.73
211965--215339	663	5.1	658	85	5	4366	35	17	16	31	1.91
215341--215866	142	3.7	140	82	7	598	30	14	18	37	1.90
217377--217627	20	12.4	20	74	5	218	27	26	7	38	1.83
217377--217626	41	6.2	41	93	1	398	27	26	7	38	1.82
217706--217938	129	1.8	124	84	4	313	44	21	21	12	1.85
218389--218494	42	2.5	43	90	1	169	39	10	29	20	1.86
220833--220895	33	1.9	33	90	0	99	47	12	19	20	1.81

Tables:   1

The End!