Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016438.1 Corchorus olitorius cultivar O-4 contig16471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7168
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:3852 original size:12 final size:13

Alignment explanation


    Indices: 3835--3867  Score: 52
    Period size: 12  Copynumber: 2.7  Consensus size: 13

       3825 CCTGTAAACA

                         
       3835 ACTCTTTCTTCT-
          1 ACTCTTTCTTCTC

                         
       3847 ACTCTTTCTTCTC
          1 ACTCTTTCTTCTC

                     
       3860 ACT-TTTCT
          1 ACTCTTTCT

       3868 CTGGGAAAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  12   17  0.85
  13    3  0.15

ACGTcount: A:0.09, C:0.33, G:0.00, T:0.58


Consensus pattern (13 bp):   
ACTCTTTCTTCTC
Done.