Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016441.1 Corchorus olitorius cultivar O-4 contig16474, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112400

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--3848
333
11.7
330
85
5
5083
34
17
15
32
1.92
3--3848
651
5.9
654
85
5
4960
34
17
15
32
1.92
3939--6713
331
8.4
330
85
4
3662
32
18
16
33
1.92
3940--6713
992
2.8
986
86
4
3738
32
18
16
33
1.92
13131--13157
13
2.1
13
100
0
54
44
7
25
22
1.79
31754--31810
3
19.0
3
87
0
60
42
33
22
1
1.64
33380--33447
25
2.7
26
82
6
88
72
1
26
0
0.94
33395--33447
5
10.4
5
85
4
52
71
1
26
0
0.96
53360--53397
13
2.9
13
88
0
58
18
28
7
44
1.78
53499--53583
41
2.0
42
88
2
127
31
14
16
37
1.88
84729--84754
11
2.4
11
100
0
52
46
7
0
46
1.31
85472--85565
49
1.9
49
95
2
172
44
12
8
34
1.73
100888--100959
36
2.0
36
100
0
144
16
30
13
38
1.88
109611--109661
25
2.0
25
92
0
84
23
7
19
49
1.74
110339--110462
61
2.0
62
93
3
214
25
16
20
37
1.93
111576--111781
75
2.8
72
91
4
349
19
14
45
20
1.85

Tables:   1

The End!