Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016442.1 Corchorus olitorius cultivar O-4 contig16475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 920

Length: 1534
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38


Found at i:1451 original size:7 final size:7

Alignment explanation


    Indices: 1410--1475  Score: 53
    Period size: 7  Copynumber: 9.3  Consensus size: 7

       1400 AAGAGTTAGG

                   
       1410 ATTATTA
          1 ATTATTA

             *     
       1417 AGTATTA
          1 ATTATTA

                 *  
       1424 ATTTAATA
          1 A-TTATTA

                 * 
       1432 A-TATGA
          1 ATTATTA

            *      
       1438 TTTATTA
          1 ATTATTA

                   
       1445 ATTATTA
          1 ATTATTA

                   
       1452 ATTATTA
          1 ATTATTA

            *      
       1459 GTTATTA
          1 ATTATTA

             *      
       1466 TTTTATTA
          1 -ATTATTA

              
       1474 AT
          1 AT

       1476 AATTTAAGAG


Statistics
Matches: 45,  Mismatches: 11, Indels: 6
        0.73            0.18        0.10

Matches are distributed among these distances:
   6    3  0.07
   7   31  0.69
   8   11  0.24

ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56


Consensus pattern (7 bp):   
ATTATTA
Done.