Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016444.1 Corchorus olitorius cultivar O-4 contig16477, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73223
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Found at i:362 original size:2 final size:2
Alignment explanation
Indices: 357--388 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
347 ATATAAACCC
357 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
389 AACCAAATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5520 original size:13 final size:13
Alignment explanation
Indices: 5502--5530 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
5492 AGTTCAAATC
5502 GTGAGATATGAAT
1 GTGAGATATGAAT
5515 GTGAGATATGAAT
1 GTGAGATATGAAT
5528 GTG
1 GTG
5531 GAATTTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (13 bp):
GTGAGATATGAAT
Found at i:10325 original size:333 final size:331
Alignment explanation
Indices: 9665--11108 Score: 1547
Period size: 329 Copynumber: 4.4 Consensus size: 331
9655 GCCCTCAAAG
* * ** * * ** * * *
9665 TTGAGGAAAAATTATTCGGGTCAATTTTTGTAAAATCTTGACCGAAATTGTCTATTAA-TCATTA
1 TTGAGGAAAAATCATTCGAGTCAATTTTTACAAAATATTAACCGAAACCGTGTACTAACT-ATCA
* * * * * * * *
9729 CAGTTTTCGTCTGAAAACGCCTTCCGGGGCCCCGACTCAATTTTGTATGCTTTTTGGCGTCAAGT
65 CAGTTTTCGGCTAAAAACGCGTTCTGGGGCCCCGA-TCAGTTTTGTATGATTTTTGGCGCCAAGA
* * * * * * * *
9794 CTCCTTGGAATATCTATATTCATCTAAAAAAATATTACCCACATTGGATTT-AAGGTTTTTTTTT
129 CTCCTTTGAATATCTATATTCATCTACAAAAATTTTAGCCACGTAGGATTTAAAGATTTGTTTTT
* ** * *
9858 ACGAGAATTTGAATCTTGTTTCGATTTGATTAGAAATTAATTCAGAATAAAATAGGAAAAACGAT
194 ACGAGAATTAGAATCCAGTTTCGATTTAATTAGAAATTAATTC-GGATAAAATAGGAAAAACGAT
** ** * * *
9923 ATTGGAAACGTGAAAAATCCTTCAATCTTTTTGGTGTTAAATTATATATCTTTTATGTGTATTGT
258 ATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTGT
9988 GGCCAAAAA
323 GGCCAAAAA
* *
9997 TTGAGGAAAAATCATTCGAATCAAATTTTACAAAATATTAACCGAAACCGTGTACTAACTATCAC
1 TTGAGGAAAAATCATTCGAGTCAATTTTTACAAAATATTAACCGAAACCGTGTACTAACTATCAC
*
10062 AGTTTTCGGCTAAAAACGCGTTCTGGGGCCCCGGATCAGTTTTGTGTGATTTTTGGCGCCAAGAA
66 AGTTTTCGGCTAAAAACGCGTTCTGGGGCCCC-GATCAGTTTTGTATGATTTTTGGCGCCAAG-A
** * * *
10127 C-CCTTTGAATATCTATATTCATCTACCCAAATCTCAGCCATGTAGGATTTAAAGATTTGTTTTT
129 CTCCTTTGAATATCTATATTCATCTACAAAAATTTTAGCCACGTAGGATTTAAAGATTTGTTTTT
* * * *
10191 ACTAGCATTAGAATCCAGTTTCGATTTAATTGGAAATTTATTCGGATAAGAATAGGAAAAACGAT
194 ACGAGAATTAGAATCCAGTTTCGATTTAATTAGAAATTAATTCGGATAA-AATAGGAAAAACGAT
* * * *
10256 ATTCGAAGCGTGAAAAGCCCTTAAATCTTTTTGGCATTGAATTATATGTTTTTTATGAGTATTGT
258 ATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTGT
10321 GGCCAAAAA
323 GGCCAAAAA
* * * *
10330 GTGAGCAAAAATCATTC-AGCTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT---GATCA
1 TTGAGGAAAAATCATTCGAG-TCAATTTTTACAAAATATTAACCGAAACCGTGTACTAACTATCA
* * * * * *
10391 C-GATTTTTGGCTAAAAATGCGTTCTGGGGTCCAGATCAGTTTTGTGTGATTTTTGGCGCCAATA
65 CAG-TTTTCGGCTAAAAACGCGTTCTGGGGCCCCGATCAGTTTTGTATGATTTTTGGCGCCAA-G
* * * *
10455 AC-CCTTTGAATATCTATATTCAT-TCACACAAATTTAAGCCACGAAGGATTTAAAGATTAGTTT
128 ACTCCTTTGAATATCTATATTCATCT-ACAAAAATTTTAGCCACGTAGGATTTAAAGATTTGTTT
* * * * * *
10518 TTACGAGCATCATAATACAATTTCGATTTAATTGGAAATTAATTCGGA-AAAGCATAGGAAAAAC
192 TTACGAGAATTAGAATCCAGTTTCGATTTAATTAGAAATTAATTCGGATAAA--ATAGGAAAAAC
* * * * * *
10582 AATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATAAATATTTTATGAGTAT
255 GATATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTAT
*
10647 TGTGGCCAAAAT
320 TGTGGCCAAAAA
* ** * * *
10659 TTGAGGAAAAATCATTCGGGTCAATTTTTGA-AAAATCCTGACCGAAATCGTGTACTAACCATCA
1 TTGAGGAAAAATCATTCGAGTCAATTTTT-ACAAAATATTAACCGAAACCGTGTACTAACTATCA
* * * * *
10723 CAGTTTTTGGCTAAAAACAG-GTTCAGGCGCCCCGACTAAGTTTTGTATGATTTTTGGCGTCAAG
65 CAGTTTTCGGCTAAAAAC-GCGTTCTGGGGCCCCGA-TCAGTTTTGTATGATTTTTGGCGCCAAG
* * *
10787 ACTCCTTTGAATATCTATATTCATCTA-AAATAATTTTAGCAACATTGGATTTAAAGA-TT-TTT
128 ACTCCTTTGAATATCTATATTCATCTACAAA-AATTTTAGCCACGTAGGATTTAAAGATTTGTTT
* * * * *
10849 TTACAAGAATCT-GAATCTTA-TTTCGATTAAATTAAAAATTCATTCGGAATAAAATAGGAAAAA
192 TTACGAGAAT-TAGAATC-CAGTTTCGATTTAATTAGAAATTAATTCGG-ATAAAATAGGAAAAA
* * *
10912 CGATATTGGAAACATGAAAAGCCCTTCAATATTTTTGGCATTGAATTATATATTTTTTATAAGTA
254 CGATATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTA
10977 TTGTGGCCAAAAA
319 TTGTGGCCAAAAA
* * * ** *
10990 TTGAGGAAAAATCATTAGGGTCATTTTTTGGAAAATATTAACCGAAACCGTGTACTAACTATCAT
1 TTGAGGAAAAATCATTCGAGTCAATTTTTACAAAATATTAACCGAAACCGTGTACTAACTATCAC
* * * * *
11055 AGTTTTCGGCTAAAAAAGTGTTATGGGGCCCCGGATTAGTTTTGTTTGATTTTT
66 AGTTTTCGGCTAAAAACGCGTTCTGGGGCCCC-GATCAGTTTTGTATGATTTTT
11109 TGCGTCTACG
Statistics
Matches: 937, Mismatches: 146, Indels: 59
0.82 0.13 0.05
Matches are distributed among these distances:
327 1 0.00
328 3 0.00
329 252 0.27
330 33 0.04
331 212 0.23
332 186 0.20
333 249 0.27
334 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (331 bp):
TTGAGGAAAAATCATTCGAGTCAATTTTTACAAAATATTAACCGAAACCGTGTACTAACTATCAC
AGTTTTCGGCTAAAAACGCGTTCTGGGGCCCCGATCAGTTTTGTATGATTTTTGGCGCCAAGACT
CCTTTGAATATCTATATTCATCTACAAAAATTTTAGCCACGTAGGATTTAAAGATTTGTTTTTAC
GAGAATTAGAATCCAGTTTCGATTTAATTAGAAATTAATTCGGATAAAATAGGAAAAACGATATT
GGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTGTGGC
CAAAAA
Found at i:10577 original size:329 final size:327
Alignment explanation
Indices: 9665--12538 Score: 2083
Period size: 333 Copynumber: 8.8 Consensus size: 327
9655 GCCCTCAAAG
* * * * * ** * * *
9665 TTGAGGAAAAATTATTCGGGTCAATTTTTGTAAAATCTTGACCGAAATTGTCTATTAATCATTAC
1 TTGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT-A-CATCAC
* * * * * * * * * * * **
9730 AGTTTTCGTCTGAAAACGCCTTCCGGGGCCCCGACTCAATTTTGTATGCTTTTTGGCGTCAAGTC
64 AGTTTTTGGCTAAAAAAGCGTTCTGGGGCCCAGA-TCAGTTTTGTGTGATTTTTGGCGCCAAAAC
* * * * * * * *
9795 TCCTTGGAATATCTATATTCATCTAAAAAAATATT-ACCCAC-ATTGGATTTAAGGTTTTTTTTT
128 -CCTTTGAATATCTATATTCATCTACACAAAT-TTAAGCCACGA-AGGATTTAAAGATTGTTTTT
* * * ** * *
9858 ACGAGAAT-TTGAATCTTGTTTCGATTTGATTAGAAATTAATTCAGAATAAAATAGGAAAAACGA
190 ACAAGCATCAT-AATC-AATTTCGATTTAATTAGAAATTAATTCGGAATAAAATAGGAAAAACGA
** ** * * *
9922 TATTGGAAACGTGAAAAATCCTTCAATCTTTTTGGTGTTAAATTATATATCTTTTATGTGTATTG
253 TATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTG
9987 TGGCCAAAAA
318 TGGCCAAAAA
* * *
9997 TTGAGGAAAAATCATTC-GAATCAAATTTTACAAAATATTAACCGAAACCGTGTACTAACTATCA
1 TTGAGGAAAAATCATTCAG-GTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT-AC-ATCA
* * *
10061 CAGTTTTCGGCTAAAAACGCGTTCTGGGGCCCCGGATCAGTTTTGTGTGATTTTTGGCGCCAAGA
63 CAGTTTTTGGCTAAAAAAGCGTTCTGGGG-CCCAGATCAGTTTTGTGTGATTTTTGGCGCCAA-A
* * * * *
10126 ACCCTTTGAATATCTATATTCATCTACCCAAATCTCAGCCATGTAGGATTTAAAGATTTGTTTTT
126 ACCCTTTGAATATCTATATTCATCTACACAAATTTAAGCCACGAAGGATTTAAAGA-TTGTTTTT
* * * * * *
10191 ACTAGCATTAGAATCCAGTTTCGATTTAATTGGAAATTTATTCGG-ATAAGAATAGGAAAAACGA
190 ACAAGCATCATAAT-CAATTTCGATTTAATTAGAAATTAATTCGGAATAA-AATAGGAAAAACGA
* * * *
10255 TATTCGAAGCGTGAAAAGCCCTTAAATCTTTTTGGCATTGAATTATATGTTTTTTATGAGTATTG
253 TATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTG
10320 TGGCCAAAAA
318 TGGCCAAAAA
* * * *
10330 GTGAGCAAAAATCATTCAGCTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT-GATCAC-G
1 TTGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACTACATCACAG
* *
10393 ATTTTTGGCTAAAAATGCGTTCTGGGGTCCAGATCAGTTTTGTGTGATTTTTGGCGCCAATAACC
66 -TTTTTGGCTAAAAAAGCGTTCTGGGGCCCAGATCAGTTTTGTGTGATTTTTGGCGCCAA-AACC
10458 CTTTGAATATCTATATTCAT-TCACACAAATTTAAGCCACGAAGGATTTAAAGATTAGTTTTTAC
129 CTTTGAATATCTATATTCATCT-ACACAAATTTAAGCCACGAAGGATTTAAAGATT-GTTTTTAC
* * * *
10522 GAGCATCATAATACAATTTCGATTTAATTGGAAATTAATTCGGAA-AAGCATAGGAAAAACAATA
192 AAGCATCATAAT-CAATTTCGATTTAATTAGAAATTAATTCGGAATAA-AATAGGAAAAACGATA
* * * * *
10586 TTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATAAATATTTTATGAGTATTGTG
255 TTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTGTG
*
10651 GCCAAAAT
320 GCCAAAAA
* * ** * *
10659 TTGAGGAAAAATCATTCGGGTCAATTTTTGAAAAATCCTGACCGAAATCGTGTACTAACCATCAC
1 TTGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT-A-CATCAC
* * * * * * *
10724 AGTTTTTGGCTAAAAACAG-GTTCAGGCGCCCCGACTAAGTTTTGTATGATTTTTGGCGTCAAGA
64 AGTTTTTGGCTAAAAA-AGCGTTCTGGGGCCCAGA-TCAGTTTTGTGTGATTTTTGGCGCCAAAA
* * * *
10788 CTCCTTTGAATATCTATATTCATCTA-AAATAATTTTAGCAAC-ATTGGATTTAAAGATT-TTTT
127 C-CCTTTGAATATCTATATTCATCTACACA-AATTTAAGCCACGA-AGGATTTAAAGATTGTTTT
* * * * *
10850 TACAAGAATC-TGAATCTTATTTCGATTAAATTAAAAATTCATTCGGAATAAAATAGGAAAAACG
189 TACAAGCATCAT-AATC-AATTTCGATTTAATTAGAAATTAATTCGGAATAAAATAGGAAAAACG
* * *
10914 ATATTGGAAACATGAAAAGCCCTTCAATATTTTTGGCATTGAATTATATATTTTTTATAAGTATT
252 ATATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATT
10979 GTGGCCAAAAA
317 GTGGCCAAAAA
* *
10990 TTGAGGAAAAATCATT-AGGGTCATTTTTTGGAAAATATTAACCGAAACCGTGTACTAACTATCA
1 TTGAGGAAAAATCATTCA-GGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT-AC-ATCA
* * * * * * * * * *
11054 TAGTTTTCGGCTAAAAAAGTGTTATGGGGCCCCGGATTAGTTTTGTTTGATTTTTTGCGTC--TA
63 CAGTTTTTGGCTAAAAAAGCGTTCTGGGG-CCCAGATCAGTTTTGTGTGATTTTTGGCGCCAAAA
* * *
11117 CGC----AA-ATCTCA-A-CCA-CGT--AC-GATTT-----A--AA-GA--T-----TTGTTTTT
127 CCCTTTGAATATCT-ATATTCATC-TACACAAATTTAAGCCACGAAGGATTTAAAGATTGTTTTT
* * * * * * * * *
11156 ACGAGCATTAGAATCCAGTTTCGATTTAAATGGAAATTTATTC-GAA-AAAGCACAAGAAAAACG
190 ACAAGCATCATAAT-CAATTTCGATTTAATTAGAAATTAATTCGGAATAAA--ATAGGAAAAACG
* * * * *
11219 ACATTTGAAGCGTGAAAAGCCCTTCAATCTTTTTTTGCATTGAATTATAAATTTTTTAT--G-A-
252 ATATTGGAAACGTGAAAAGCCCTTCAATC-TTTTTGGCATTGAATTATATATTTTTTATGAGTAT
*
11280 ---GG-AAAAATCA
316 TGTGGCCAAAA--A
** ** ** * * *
11290 TTCG-GG-TCAAT--TT--TTTCAATTTTTGCAAAATCCTGACCGAAATCGTG---TACATTACA
1 TT-GAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACTACATCACA
* ** * * * * * * * *
11346 GTTTTCGGC-AAATATCGCGTTCTAAGGCCCCGGCTCAGTTTTGTATGATTTTTTGCGTCAAGAC
65 GTTTTTGGCTAAA-AAAGCGTTCT-GGGGCCCAGATCAGTTTTGTGTGATTTTTGGCGCCAAAAC
* * * * *
11410 TCCTTGGAATATCTATATTCATCTA-ACAAAATTTTAGCCAC-ATTGGATTTAAGGATTTTTTTT
128 -CCTTTGAATATCTATATTCATCTACAC-AAATTTAAGCCACGA-AGGATTTAAAGA--TTGTTT
* * **
11473 TTAACGAGAATC-TGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAATAAAATAGGAAAAA
188 TT-ACAAGCATCAT-AATC-AATTTCGATTTAATTAGAAATTAATTCGGAATAAAATAGGAAAAA
* * * * *
11537 CGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTATGGCGTTGAATGATATATTTTTTATGAGTA
250 CGATATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTA
*
11602 TTGTGGCCGAAAA
315 TTGTGGCCAAAAA
* * * *
11615 TTGAGGAAAAATCATTCGGGTCAAATTTTTGCAAAATATTAATCGAAACCATGTATTAACGATCA
1 TTGAGGAAAAATCATTCAGGTC-AATTTTTGCAAAATATTAACCGAAACCGTGTACT-AC-ATCA
* * * * * *
11680 C-GATTTTTTGCTAAAAACGCGTTCCGGGGACACC-GCTCAGTTTTCTGTGATTTTTGGCGTCAA
63 CAG-TTTTTGGCTAAAAAAGCGTTCTGGGG-C-CCAGATCAGTTTTGTGTGATTTTTGGCGCCAA
* * * * * * *
11743 GAATCCTTTGAATATCTATATTCATCTACCCATATGTCAGCCAC-ACAAGATTTAAAAATTTGTT
125 -AACCCTTTGAATATCTATATTCATCTACACAAATTTAAGCCACGA-AGGATTTAAAGA-TTGTT
* * * * * ** *
11807 TTTACGAGCATCAGAATCCAATTTCGATTTAATAAAAAATTATTTCGGAA-AGGCATATGAAAAA
187 TTTACAAGCATCATAAT-CAATTTCGATTTAATTAGAAATTAATTCGGAATA-AAATAGGAAAAA
* * ** * *
11871 CGATATTTGAAGCGTGAAAAATCCTTCAATCTTTTTTGCGA-TGATTTATATATTTTTTATGAGT
250 CGATATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGC-ATTGAATTATATATTTTTTATGAGT
* **
11935 ATTTTGTTCAAAAA
314 ATTGTGGCCAAAAA
** * * * *
11949 TTGAGGAAAAATCATTTGGGTCAATTTTTGCAAAATCTTGACCGAAATCGTGTGCTAACCATCAC
1 TTGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACT-A-CATCAC
* * * * * * *
12014 AGTTTTCGGGTAAAAATGCGTTCTGGGGCCCCGGCTCAGTTTTGTATGATTTTTGGCGCCAAGAC
64 AGTTTTTGGCTAAAAAAGCGTTCTGGGG-CCCAGATCAGTTTTGTGTGATTTTTGGCGCCAAAAC
* * * * * *
12079 TCTTTGGAATATCTATATTCATCTA-ACACAATCTCAA-CCAC-ATTGAATTTAAGGATAT-CTT
128 CCTTT-GAATATCTATATTCATCTACACA-AAT-TTAAGCCACGA-AGGATTTAAAGAT-TGTTT
* * * * * *
12140 CTACGAGCATCAGAATCCATTTTCGTTTTAATTAGAAATTAATTCGGAAGAAAATAGGAAAAACG
188 TTACAAGCATCATAAT-CAATTTCGATTTAATTAGAAATTAATTCGGAATAAAATAGGAAAAACG
* * * * *
12205 ATATTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATG
252 ATATTGGAAACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATT
12270 GTGGCCAAAAA
317 GTGGCCAAAAA
* * * *
12281 TTAAGGAAAAATCGTTCAGGTCAATTTTTGCAAAATCTTAACCGAAAACCATGTACTAACCATCA
1 TTGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCG-AAACCGTGTACT-A-CATCA
* * * ** *
12346 CAGTTTTCGGCTAAAAACGCGTT-TCGAGGGCCC-GAATCAATTTTGTGTGATTTAAGGTGCCAA
63 CAGTTTTTGGCTAAAAAAGCGTTCT-G-GGGCCCAG-ATCAGTTTTGTGTGATTTTTGGCGCCAA
* * * * * *
12409 GAACCCTTTGTATATCTATATTCAT-TCACCCAAATCTCAGTCACGTAGGATTTAAAGATTTGTT
125 -AACCCTTTGAATATCTATATTCATCT-ACACAAATTTAAGCCACGAAGGATTTAAAGA-TTGTT
* * * * * *
12473 TTTACGAGCATCCA-AATCCAGTTTCAATTTAATTGGAAATTAATTCAGAA-AAGCATAGGAAAA
187 TTTACAAGCAT-CATAAT-CAATTTCGATTTAATTAGAAATTAATTCGGAATAA-AATAGGAAAA
12536 ACG
249 ACG
12539 TTATGCGAAG
Statistics
Matches: 2051, Mismatches: 358, Indels: 264
0.77 0.13 0.10
Matches are distributed among these distances:
289 3 0.00
290 47 0.02
291 4 0.00
292 3 0.00
293 1 0.00
295 26 0.01
297 5 0.00
298 9 0.00
299 8 0.00
300 8 0.00
301 1 0.00
302 4 0.00
303 4 0.00
304 6 0.00
305 68 0.03
306 28 0.01
307 1 0.00
308 1 0.00
309 1 0.00
310 2 0.00
311 2 0.00
312 1 0.00
313 1 0.00
314 1 0.00
319 36 0.02
320 70 0.03
321 6 0.00
322 7 0.00
323 5 0.00
324 4 0.00
325 5 0.00
326 5 0.00
327 3 0.00
328 6 0.00
329 259 0.13
330 37 0.02
331 243 0.12
332 355 0.17
333 460 0.22
334 205 0.10
335 16 0.01
336 87 0.04
337 7 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (327 bp):
TTGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATATTAACCGAAACCGTGTACTACATCACAG
TTTTTGGCTAAAAAAGCGTTCTGGGGCCCAGATCAGTTTTGTGTGATTTTTGGCGCCAAAACCCT
TTGAATATCTATATTCATCTACACAAATTTAAGCCACGAAGGATTTAAAGATTGTTTTTACAAGC
ATCATAATCAATTTCGATTTAATTAGAAATTAATTCGGAATAAAATAGGAAAAACGATATTGGAA
ACGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAGTATTGTGGCCAAA
AA
Found at i:14946 original size:219 final size:220
Alignment explanation
Indices: 14517--14962 Score: 642
Period size: 219 Copynumber: 2.0 Consensus size: 220
14507 AGGAAAAATC
* * * **
14517 ATTCGGATCAACTTTTGCAAAATCCTGACCGAAATCGTGTACTAACCATCACAGTTTTTTGCTAA
1 ATTCGGATCAACTTTTGCAAAATCCTAACCGAAACCGTGTAATAACCATCACAGTTTTCGGCTAA
* * * * * * **
14582 AAACGCGTTTCGGGGCCCCGGCTCAGTTTTGTGTGATTTTTTGCGCCAAGAATTCTTTGAATATC
66 AAACGCGTTTAGGGGCCCCGGATCAGTTTTGTGAGATTTATGGCACCAAGAACCCTTTGAATATC
* *
14647 TATATTCATTTACCCAATTCTCAGCCACATAAGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
131 TATATTCATTTACCCAAATCTCAGCCACATAAGATTTAAAGATTTATTTTTACGAGCATCAGAAT
*
14712 CCAGTTTCGATTTAATTAAAAATTA
196 CCAGTTTCAATTTAATTAAAAATTA
* * * * *
14737 ATTCGGGTCAATTTTTGCTAAATCTTAATCGAAACCGTGTAATAACCATCACAGTTTTCGGCTAA
1 ATTCGGATCAACTTTTGCAAAATCCTAACCGAAACCGTGTAATAACCATCACAGTTTTCGGCTAA
*
14802 AAACGCG-TTAGGGGCCCCGGATCAGTTTTGTGAGATTTATGGCACTAAGAACCCTTTGAATATC
66 AAACGCGTTTAGGGGCCCCGGATCAGTTTTGTGAGATTTATGGCACCAAGAACCCTTTGAATATC
* * *
14866 TATATTCATTTACCCAAATCTCAGCCACGTAGGATTTAAAGATTTATTTTTACGAGCATTAGAAT
131 TATATTCATTTACCCAAATCTCAGCCACATAAGATTTAAAGATTTATTTTTACGAGCATCAGAAT
**
14931 CCAGTTTCAATTTAATTGGAAATTA
196 CCAGTTTCAATTTAATTAAAAATTA
14956 ATTCGGA
1 ATTCGGA
14963 AAAGCAAAGG
Statistics
Matches: 198, Mismatches: 28, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
219 136 0.69
220 62 0.31
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (220 bp):
ATTCGGATCAACTTTTGCAAAATCCTAACCGAAACCGTGTAATAACCATCACAGTTTTCGGCTAA
AAACGCGTTTAGGGGCCCCGGATCAGTTTTGTGAGATTTATGGCACCAAGAACCCTTTGAATATC
TATATTCATTTACCCAAATCTCAGCCACATAAGATTTAAAGATTTATTTTTACGAGCATCAGAAT
CCAGTTTCAATTTAATTAAAAATTA
Found at i:15353 original size:332 final size:330
Alignment explanation
Indices: 14737--15910 Score: 911
Period size: 332 Copynumber: 3.7 Consensus size: 330
14727 TTAAAAATTA
* *
14737 ATTCGGGTCAATTTTTGCTAAATCTTAATCGAAACCGTGTAATAACCATCACAGTTTTCGGCTAA
1 ATTCGGGTCAATTTTTGCAAAATCTTAACCGAAA-CGTGTAATAACCATCACAGTTTTCGGCTAA
* *
14802 AAACGCGTTAGGGGCCCCGGATCAGTTTTGTGA-GATTTATGGCACTAAGAACCCTTTGAATATC
65 AAACGCGTTAGGGGCCCCAGATCAGTTTTGT-ATGATTTTTGGCACTAAGAACCCTTTGAATATC
* ** ** *
14866 TATATTCATTTACCCAAATCTCAGCCACGTAGGATTTAAAGATTTATTTTTACGAGCATTAGAAT
129 TATATTCATCTACAAAAATCTCAGCCAAATAGGATTTAAAGATTTATTTTTACGAGAATTAGAAT
* * * * * *
14931 CCAGTTTCAATTTAATTGGAAATTAATTCGGAAAAGCAAAGGACAAACGTTATTCGAAGCGTGAA
194 CCAGTTTCAATTTAATTAGAAATTAATTCAGAAAA-CAAAGGAAAAACGATACTCGAAACGTGAA
** *
14996 AAGTCCTTCAATCTTTTTAGCATTGAATTA-ATAATTTTTTATGAGTATGGTGCCCAAAAATTCA
258 AAACCCTTCAATATTTTTAGCATTGAATTATAT-ATTTTTTATGAGTATGGTGCCCAAAAATTCA
15060 AGAAAAATC
322 AGAAAAATC
* * *
15069 ATTCGGGTCAATTTTTGCAAAATCTTGACCGAAATCGTGTATTAACCATCACAGTTTTCGACTAA
1 ATTCGGGTCAATTTTTGCAAAATCTTAACCGAAA-CGTGTAATAACCATCACAGTTTTCGGCTAA
* * *
15134 AAACGCGTTCCGAGGCCCC-GACTCAGTTTTGTATGATTTTTGGCA-TCAAG-ACTCTTTGCAAT
65 AAACGCGTT-AGGGGCCCCAGA-TCAGTTTTGTATGATTTTTGGCACT-AAGAACCCTTTG-AAT
* * * * *
15196 ATCTATATTCATCTA-AAAAAGTTTTAGCCAAATTGGATTTAAGGATTT-TTTTTATGAGAATCT
126 ATCTATATTCATCTACAAAAA-TCTCAGCCAAATAGGATTTAAAGATTTATTTTTACGAGAAT-T
* * * * *
15259 -GATTCTTAG-TTCGATTTAATTAGAAATTAATTCATAATAA-AATAGGAAAAACGATACTGGAA
189 AGAATC-CAGTTTCAATTTAATTAGAAATTAATTCAGAA-AACAA-AGGAAAAACGATACTCGAA
* * * *
15321 ACGTGAAAAACCCTTCAATATTTTTGGCATTGAATTATATATTTTTTATGAGTATTGTGGCTAAA
251 ACGTGAAAAACCCTTCAATATTTTTAGCATTGAATTATATATTTTTTATGAGTATGGTGCCCAAA
* *
15386 AATTGAGGAAAAATC
316 AATTCAAGAAAAATC
* * * * * *
15401 ATTCGAGTCAATTTTTGGAAAATATTAACCGAAGACGTATACTAACTATCACAGTTTTCGGCTAA
1 ATTCGGGTCAATTTTTGCAAAATCTTAACCGAA-ACGTGTAATAACCATCACAGTTTTCGGCTAA
* * *
15466 AAACGCGTTATGGGGCCCCAGATAAGTTTTGTTTGATTTTTGGCGTCT----ACCC----AA-AT
65 AAACGCGTTA-GGGGCCCCAGATCAGTTTTGTATGATTTTTGGC-ACTAAGAACCCTTTGAATAT
* * * * *
15522 C-----TCAGC--C----A---C-G---TATAGGATTTAAAGATTTGTTTTTATGAGCATTAGAA
128 CTATATTCATCTACAAAAATCTCAGCCAAATAGGATTTAAAGATTTATTTTTACGAGAATTAGAA
* * ** * * * * ***
15569 TCCAGTTTCGATTTAATTGGAAATTTGTTCGGAAAAGCACAGGAAAAACGATATTAGAAGTATGA
193 TCCAGTTTCAATTTAATTAGAAATTAATTCAGAAAA-CAAAGGAAAAACGATACTCGAAACGTGA
* * * *
15634 AAAGCCCTTCAAT-CTTTTGGCATTGAATTATAAATTTTTTAT--G-A--G-G---AAAAA-TC-
257 AAAACCCTTCAATATTTTTAGCATTGAATTATATATTTTTTATGAGTATGGTGCCCAAAAATTCA
15687 ------AT-
322 AGAAAAATC
* * **
15689 -TT-GGGTCAATTTTTGCAAAAT-TCTGACCGAAATCGTGTACTAACCATCACAGTTTTTTGCTA
1 ATTCGGGTCAATTTTTGCAAAATCT-TAACCGAAA-CGTGTAATAACCATCACAGTTTTCGGCTA
* * * * * * *
15751 AAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTTTGAATAT
64 AAAACGCGTT-AGGGGCCCCAGATCAGTTTTGTATGATTTTTGGCACTAAGAACCCTTTGAATAT
* * * * * * *
15816 CTATAATCATCTA-AGCAAATCTCAGCCACATAAGATTTAAAGATTTGTTTTTACGAGCATCAGA
128 CTATATTCATCTACA-AAAATCTCAGCCAAATAGGATTTAAAGATTTATTTTTACGAGAATTAGA
* * *
15880 ATCCATTTTCGATTTAATTAAAAATTAATTC
192 ATCCAGTTTCAATTTAATTAGAAATTAATTC
15911 GCATCAATTT
Statistics
Matches: 686, Mismatches: 103, Indels: 126
0.75 0.11 0.14
Matches are distributed among these distances:
285 3 0.00
286 88 0.13
287 2 0.00
289 5 0.01
293 2 0.00
294 3 0.00
296 1 0.00
297 5 0.01
299 4 0.01
300 1 0.00
301 1 0.00
303 1 0.00
304 1 0.00
305 1 0.00
306 47 0.07
307 71 0.10
308 2 0.00
309 2 0.00
312 58 0.08
314 1 0.00
319 4 0.01
324 3 0.00
325 2 0.00
330 3 0.00
331 2 0.00
332 294 0.43
333 78 0.11
334 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (330 bp):
ATTCGGGTCAATTTTTGCAAAATCTTAACCGAAACGTGTAATAACCATCACAGTTTTCGGCTAAA
AACGCGTTAGGGGCCCCAGATCAGTTTTGTATGATTTTTGGCACTAAGAACCCTTTGAATATCTA
TATTCATCTACAAAAATCTCAGCCAAATAGGATTTAAAGATTTATTTTTACGAGAATTAGAATCC
AGTTTCAATTTAATTAGAAATTAATTCAGAAAACAAAGGAAAAACGATACTCGAAACGTGAAAAA
CCCTTCAATATTTTTAGCATTGAATTATATATTTTTTATGAGTATGGTGCCCAAAAATTCAAGAA
AAATC
Found at i:16131 original size:220 final size:220
Alignment explanation
Indices: 15694--16118 Score: 600
Period size: 220 Copynumber: 1.9 Consensus size: 220
15684 ATCATTTGGG
* * **
15694 TCAATTTTTGCAAAATTCTGACCGAAATCGTGTACTAACCATCACAGTTTTTTGCTAAAAACGCG
1 TCAATTTTTGCAAAATTCTAACCGAAACCGTGTACTAACCATCACAGTTTTCGGCTAAAAACGCG
** * * * * *
15759 TTCCGGGGCCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTTTGAATATCTATAATC
66 TTCCGAAGCCCCGGATCAGTTTTGTGAGATTTATGGCACCAAGAACCCTTTGAATATCTATAATC
* * * *
15824 ATCTAAGCAAATCTCAGCCACATAAGATTTAAAGATTTGTTTTTACGAGCATCAGAATCCATTTT
131 ATCTAACCAAATCTCAGCCACATAAGATTTAAAGATTTGTTTTTACAAGCAACAGAATCCAGTTT
*
15889 CGATTTAATTAAAAATTAATTCGCA
196 CAATTTAATTAAAAATTAATTCGCA
* * *
15914 TCAATTTTTGCAAAA-TCTTAACCGAAACCGTGTAGTAACTATCATAGTTTTCGGCTAAAAACGC
1 TCAATTTTTGCAAAATTC-TAACCGAAACCGTGTACTAACCATCACAGTTTTCGGCTAAAAACGC
** *
15978 GTTCCGAAGCCCCGGATCAGTTTTGTGAGATTTATGGCACCTGGAACCCTTTGAATATCTATATT
65 GTTCCGAAGCCCCGGATCAGTTTTGTGAGATTTATGGCACCAAGAACCCTTTGAATATCTATAAT
* * * *
16043 CATTTACCCAAATCTCAGCCACGTAGGATTTAAAGATTTGTTTTTACAAGCAACAGAATCCAGTT
130 CATCTAACCAAATCTCAGCCACATAAGATTTAAAGATTTGTTTTTACAAGCAACAGAATCCAGTT
16108 TCAATTTAATT
195 TCAATTTAATT
16119 GGGAATTAAT
Statistics
Matches: 178, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
219 2 0.01
220 176 0.99
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (220 bp):
TCAATTTTTGCAAAATTCTAACCGAAACCGTGTACTAACCATCACAGTTTTCGGCTAAAAACGCG
TTCCGAAGCCCCGGATCAGTTTTGTGAGATTTATGGCACCAAGAACCCTTTGAATATCTATAATC
ATCTAACCAAATCTCAGCCACATAAGATTTAAAGATTTGTTTTTACAAGCAACAGAATCCAGTTT
CAATTTAATTAAAAATTAATTCGCA
Found at i:17437 original size:30 final size:30
Alignment explanation
Indices: 17396--17454 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
17386 CGTTTGGAAA
*
17396 TTTCTATAGAAAGTAAAAGGA-TATAAAGTC
1 TTTCTACAGAAAGT-AAAGGACTATAAAGTC
*
17426 TTTCTACAGAAAGTTAAGGACTATAAAGT
1 TTTCTACAGAAAGTAAAGGACTATAAAGT
17455 TTTTTCTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (30 bp):
TTTCTACAGAAAGTAAAGGACTATAAAGTC
Found at i:23222 original size:2 final size:2
Alignment explanation
Indices: 23215--23242 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23205 TTATTCTTGC
23215 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23243 CCGTTTCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24312 original size:2 final size:2
Alignment explanation
Indices: 24299--24335 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
24289 AAATCTAATC
*
24299 AT AT AT AC AT AT AT AT AT AT ACT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT
24336 GACCAATGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:27091 original size:3 final size:3
Alignment explanation
Indices: 27083--27125 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
27073 GTGCAAAATA
27083 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
27126 TACTAGTAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:27520 original size:2 final size:2
Alignment explanation
Indices: 27515--27545 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
27505 ACCTAGGAAG
27515 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27546 CTACTCCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:38376 original size:14 final size:14
Alignment explanation
Indices: 38357--38383 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38347 TAAAGTGAAG
38357 TATATAGTAATATA
1 TATATAGTAATATA
38371 TATATAGTAATAT
1 TATATAGTAATAT
38384 CAATCAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
TATATAGTAATATA
Found at i:48352 original size:11 final size:11
Alignment explanation
Indices: 48338--48375 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
48328 ATTCATAACA
48338 AATTTATAATT
1 AATTTATAATT
48349 AATTTATAATT
1 AATTTATAATT
48360 -ATTTGATAATT
1 AATTT-ATAATT
*
48371 TATTT
1 AATTT
48376 TATATAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.16
11 17 0.68
12 4 0.16
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (11 bp):
AATTTATAATT
Found at i:70247 original size:335 final size:330
Alignment explanation
Indices: 69343--70753 Score: 1593
Period size: 336 Copynumber: 4.2 Consensus size: 330
69333 TGGAAAACGA
** *
69343 CCTTCAATTTTTTTTGGCACTGAATTAAATATTATTTCTGAGTATTGTGGCAAAGAATTGAGG-A
1 CCTTCAA--TTTTTTGGCGTTGAATTATATATT-TTT-TGAGTATTGTGGCAAAGAATTGAGGAA
* *
69407 AAAAATTTTCGGGTAAGTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGATTTTT
62 AAAAATTTT-GGGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTT
* * *
69472 -GCGTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTCGCATCATTTTTGGTGTAAAGACTCCTTG
126 GGC-TAAAAACGCGTTCCGGAGCCCCGACTCAATTTTGCATCATTTTTGGAGTAAAGACTCCTTG
* *
69536 AATTATCTATATTCATCGAACCAAATCTCAGCCACATTGAATATAA-AGATTTGTTTTT-TCGAG
190 AAATATCTATATTCATCGAACCAAATCTCAGCCAAATTGAATATAAGA-ATTTGTTTTTAT-GAG
* **
69599 AATCTAAATCTTGTTTCGATTTAATTAGTAATTAAATTGG--GGAAAATGGAAAAATGATATTAG
253 AATCTGAATCTTGTTTCGATTTAATTAGTAATTAAATTGGAAAAAAAATGGAAAAATGATATTAG
* *
69662 ATGCGTG-AAAAT
318 AAGCGTGAAAAAC
* * *
69674 CTTGTCAATCTTTTTGGTGTTGAATTATATATTTTTTCAGAGTATTGTGGCAAATAA-TGA-GAA
1 CCT-TCAAT-TTTTTGGCGTTGAATTATATATTTTTT--GAGTATTGTGGCAAAGAATTGAGGAA
** * * *
69737 AAACGTTTTCGG---G----T-C-AATTTTTAG-TCGAAATCATGTACTAACCATCATTG-TTTT
62 AAAAATTTTGGGTCAGTTTTTGCAAAATTTTAGCT-GAAATCATGTACTAACCATCA-CGATTTT
* * * * *
69791 TGGCTAAAAACGCGTTTCGG-GACCCCGATTCAGTTTTGCATGATTTTTGGCAG-AAAGTCTCCT
125 TGGCTAAAAACGCGTTCCGGAG-CCCCGACTCAATTTTGCATCATTTTTGG-AGTAAAGACTCCT
* * * * * *
69854 TGAAATATCTATATTCATCTAACCAAATCTCAACAAAATTGGATTTAAGAAATTGTTTTTATGAG
188 TGAAATATCTATATTCATCGAACCAAATCTCAGCCAAATTGAATATAAGAATTTGTTTTTATGAG
* **
69919 AATCTGAATCTTATTTCGATTTAATTAG-AATTAAATTCGGAATAAAAAAACTGGAAAAACCATA
253 AATCTGAATCTTGTTTCGATTTAATTAGTAATTAAATT-GG-A-AAAAAAA-TGGAAAAATGATA
69983 TTAGAAGCGTGAAAAAAC
314 TTAGAAGCGTG-AAAAAC
70001 CCTTCAATTTTTTGGCGTTGAATTATATATTTTTATGAGTATTGTGGCAAAGAATTGAGGAAAAA
1 CCTTCAATTTTTTGGCGTTGAATTATATATTTTT-TGAGTATTGTGGCAAAGAATTGAGGAAAAA
* * * *
70066 AATTTTGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCGTGTTCTAACCATCACGGTTTTTGACT
65 AATTTTGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGGCT
* * * * * *
70131 AAAAACGCGTTTCGG-GACCCCAATTCAGTTTTGCATGATTTTTGGCAG-AAAGACTACTTGAAA
130 AAAAACGCGTTCCGGAG-CCCCGACTCAATTTTGCATCATTTTTGG-AGTAAAGACTCCTTGAAA
* * **
70194 TATCTATATTAATCTAAGAAAATCTCAGCCAAATTGGAAT-TAAGAATTTGTTTTTATGAGAATC
193 TATCTATATTCATCGAACCAAATCTCAGCCAAATT-GAATATAAGAATTTGTTTTTATGAGAATC
* *
70258 TGAATTTTGTTTCGATTTAATTAG-ATTTAAATTCGGAAAAAAAAACTGGAAAAATGATATTAGA
257 TGAATCTTGTTTCGATTTAATTAGTAATTAAATT-GG-AAAAAAAA-TGGAAAAATGATATTAGA
70322 AGCGTGAAAAAAC
319 AGCGTG-AAAAAC
* * * *
70335 CATTCTATTCTTTTGGCGTTGAATTATATATTTTTTCTGGGTATTGTGGCAAAGAATTGAGCAAA
1 CCTTCAATT-TTTTGGCGTTGAATTATATA-TTTTT-TGAGTATTGTGGCAAAGAATTGAGGAAA
* *
70400 AAATTTTTGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACGATTTTTGG
63 AAAATTTTGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGG
* *
70465 CTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTTGCATCATTTTTGGTGTAAAGACTCCTTGAAA
128 CTAAAAACGCGTTCCGGAGCCCCGACTCAATTTTGCATCATTTTTGGAGTAAAGACTCCTTGAAA
* * * *
70530 TATCTATATTCATCGAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTTACGAGCATCT
193 TATCTATATTCATCGAACCAAATCTCAGCCAAATTGAATATAAGAATTTGTTTTTATGAGAATCT
* *
70595 GAATCTTGTTTCGATTTAATTAGTAATT-AATGTGGGGAAAAAAATGGAAAAATGATATTAGATG
258 GAATCTTGTTTCGATTTAATTAGTAATTAAAT-T-GGAAAAAAAATGGAAAAATGATATTAGAAG
*
70659 CGTGAAAATC
321 CGTGAAAAAC
* * * * *
70669 TCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAAAGTATTGTGGCAAAAAAATGA-GAAA
1 CCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTT--GAGTATTGTGGCAAAGAATTGAGGAAA
* * *
70733 AAAGTTTGCGGGTCAATTTTT
63 AAAATTT-TGGGTCAGTTTTT
70754 AGCCGGAAAA
Statistics
Matches: 929, Mismatches: 105, Indels: 89
0.83 0.09 0.08
Matches are distributed among these distances:
319 10 0.01
320 162 0.17
321 7 0.01
322 1 0.00
324 21 0.02
325 49 0.05
326 19 0.02
327 6 0.01
329 5 0.01
330 15 0.02
331 38 0.04
332 5 0.01
333 15 0.02
334 104 0.11
335 232 0.25
336 233 0.25
337 7 0.01
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (330 bp):
CCTTCAATTTTTTGGCGTTGAATTATATATTTTTTGAGTATTGTGGCAAAGAATTGAGGAAAAAA
ATTTTGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGGCTA
AAAACGCGTTCCGGAGCCCCGACTCAATTTTGCATCATTTTTGGAGTAAAGACTCCTTGAAATAT
CTATATTCATCGAACCAAATCTCAGCCAAATTGAATATAAGAATTTGTTTTTATGAGAATCTGAA
TCTTGTTTCGATTTAATTAGTAATTAAATTGGAAAAAAAATGGAAAAATGATATTAGAAGCGTGA
AAAAC
Found at i:70538 original size:336 final size:333
Alignment explanation
Indices: 69353--70753 Score: 1633
Period size: 335 Copynumber: 4.2 Consensus size: 333
69343 CCTTCAATTT
** * * *
69353 TTTTTGGCACTGAATTAAATATTATTTCTGAGTATTGTGGCAAAGAATTGAGGAAAAAATTTTCG
1 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGA-GAAAAAATTTTTG
* *
69418 GGTAAGTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGATTTTT-GCGTAAAAAC
65 GGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGGC-TAAAAAC
* * * *
69482 GCGTTCC-GGAGCCCCGGCTCAATTTCGCATCATTTTTGG-TGTAAAGACTCCTTGAATTATCTA
129 GCGTTCCGGGA-CCCCGACTCAATTTTGCATCATTTTTGGCAG-AAAGACTCCTTGAAATATCTA
* *
69545 TATTCATCGAACCAAATCTCAGCCACATTGAATATAA-AGATTTGTTTTT-TCGAGAATCTAAAT
192 TATTCATCGAACCAAATCTCAGCCAAATTGAATATAAGA-ATTTGTTTTTAT-GAGAATCTGAAT
** *
69608 CTTGTTTCGATTTAATTAGTAATTAAATTGG---GGAAAATGGAAAAATGATATTAGATGCGTG-
255 CTTGTTTCGATTTAATTAGTAATTAAATTGGAAAAAAAAATGGAAAAATGATATTAGAAGCGTGA
* *
69669 AAAATCTTGTCAATC
320 AAAACCTTCT-AATC
* * * ** *
69684 TTTTTGGTGTTGAATTATATATTTTTTCAGAGTATTGTGGCAAATAA-TGAGAAAAACGTTTTCG
1 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGAAAAAATTTTTGG
* *
69748 G---G----T-C-AATTTTTAG-TCGAAATCATGTACTAACCATCATTG-TTTTTGGCTAAAAAC
66 GTCAGTTTTTGCAAAATTTTAGCT-GAAATCATGTACTAACCATCA-CGATTTTTGGCTAAAAAC
* * * * *
69802 GCGTTTCGGGACCCCGATTCAGTTTTGCATGATTTTTGGCAGAAAGTCTCCTTGAAATATCTATA
129 GCGTTCCGGGACCCCGACTCAATTTTGCATCATTTTTGGCAGAAAGACTCCTTGAAATATCTATA
* * * * * * *
69867 TTCATCTAACCAAATCTCAACAAAATTGGATTTAAGAAATTGTTTTTATGAGAATCTGAATCTTA
194 TTCATCGAACCAAATCTCAGCCAAATTGAATATAAGAATTTGTTTTTATGAGAATCTGAATCTTG
**
69932 TTTCGATTTAATTAG-AATTAAATTCGGAATAAAAAAACTGGAAAAACCATATTAGAAGCGTGAA
259 TTTCGATTTAATTAGTAATTAAATT-GGAA-AAAAAAA-TGGAAAAATGATATTAGAAGCGTG-A
69996 AAAACCCTTC-AAT-
320 AAAA-CCTTCTAATC
* *
70009 TTTTTGGCGTTGAATTATATA-TTTTTATGAGTATTGTGGCAAAGAATTGAGGAAAAAAATTTTG
1 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGA-GAAAAAATTTTTG
* * * *
70073 GGTCAGTTTTTGCAAAATTTTAGCTGAAATCGTGTTCTAACCATCACGGTTTTTGACTAAAAACG
65 GGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGGCTAAAAACG
* * * * * *
70138 CGTTTCGGGACCCCAATTCAGTTTTGCATGATTTTTGGCAGAAAGACTACTTGAAATATCTATAT
130 CGTTCCGGGACCCCGACTCAATTTTGCATCATTTTTGGCAGAAAGACTCCTTGAAATATCTATAT
* * ** *
70203 TAATCTAAGAAAATCTCAGCCAAATTGGAAT-TAAGAATTTGTTTTTATGAGAATCTGAATTTTG
195 TCATCGAACCAAATCTCAGCCAAATT-GAATATAAGAATTTGTTTTTATGAGAATCTGAATCTTG
*
70267 TTTCGATTTAATTAG-ATTTAAATTCGGAAAAAAAAACTGGAAAAATGATATTAGAAGCGTGAAA
259 TTTCGATTTAATTAGTAATTAAATT-GGAAAAAAAAA-TGGAAAAATGATATTAGAAGCGTG-AA
*
70331 AAACCATTCTATTC
321 AAACC-TTCTAATC
*
70345 -TTTTGGCGTTGAATTATATATTTTTTCTGGGTATTGTGGCAAAGAATTGAGCAAAAAATTTTTG
1 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAG-AAAAAATTTTTG
*
70409 GGTCAGTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACG
65 GGTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGGCTAAAAACG
* *
70474 CGTTCC-GGAGCCCCGGCTCAATTTTGCATCATTTTTGG-TGTAAAGACTCCTTGAAATATCTAT
130 CGTTCCGGGA-CCCCGACTCAATTTTGCATCATTTTTGGCAG-AAAGACTCCTTGAAATATCTAT
* * * *
70537 ATTCATCGAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTTACGAGCATCTGAATCTT
193 ATTCATCGAACCAAATCTCAGCCAAATTGAATATAAGAATTTGTTTTTATGAGAATCTGAATCTT
** *
70602 GTTTCGATTTAATTAGTAATT-AATGTGGGGAAAAAAATGGAAAAATGATATTAGATGCGTGAAA
258 GTTTCGATTTAATTAGTAATTAAAT-TGGAAAAAAAAATGGAAAAATGATATTAGAAGCGTGAAA
* *
70666 ATCTCGTC-AATC
322 AAC-CTTCTAATC
** * * **
70678 TTTTTGGCGTTGAATTATATATTTTTTCAAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTGCG
1 TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGAAAAAA-TTTTTG
*
70743 GGTCAATTTTT
65 GGTCAGTTTTT
70754 AGCCGGAAAA
Statistics
Matches: 922, Mismatches: 105, Indels: 83
0.83 0.09 0.07
Matches are distributed among these distances:
319 9 0.01
320 160 0.17
321 10 0.01
322 1 0.00
324 26 0.03
325 44 0.05
326 16 0.02
327 4 0.00
328 3 0.00
329 12 0.01
330 3 0.00
331 40 0.04
333 12 0.01
334 108 0.12
335 238 0.26
336 232 0.25
337 4 0.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (333 bp):
TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAGAATTGAGAAAAAATTTTTGG
GTCAGTTTTTGCAAAATTTTAGCTGAAATCATGTACTAACCATCACGATTTTTGGCTAAAAACGC
GTTCCGGGACCCCGACTCAATTTTGCATCATTTTTGGCAGAAAGACTCCTTGAAATATCTATATT
CATCGAACCAAATCTCAGCCAAATTGAATATAAGAATTTGTTTTTATGAGAATCTGAATCTTGTT
TCGATTTAATTAGTAATTAAATTGGAAAAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAACC
TTCTAATC
Found at i:72218 original size:659 final size:656
Alignment explanation
Indices: 70878--73196 Score: 3535
Period size: 658 Copynumber: 3.5 Consensus size: 656
70868 ATTTTTGGGT
* *
70878 CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGATCAAATTTT-TATCATTTTTGGTGTAAAG
1 CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTC-AATTTTGCATCATTTTTGGTGTAAAG
* * *
70942 ACTCCTTGAAATATATATATAT-ATTCATTGAACCAAATATCAGCCACATTAAATATAAGGATTT
65 ACTCCTTGAAATATCTATAT-TCA-TCA---AACCAAATCTCAGCCACATTGAATATAAGGATTT
*
71006 GTTTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGAGGAAAAAATGGAAA
125 GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGAGG-AAAAATGGAAA
*
71071 AATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATATATTTCTTCAAAG
189 AATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAAAG
71136 TATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCGAAATCGTGTACTAACC
254 TATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCGAAATCGTGTACTAACC
*
71201 ATCACGGTTTTTGGCTAAAAAC-CGTTTCGGGACCCCAGTTCAGTTTTGCATGAATTTTGGCAGA
319 ATCACGGTTTTTGGCTAAAAACGCGTTTCGGGA-CCCAGTTCAGTTTTGCATGATTTTTGGCAGA
* *
71265 AGGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATATAAGGATTTGT
383 AAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGT
71330 TTTTATGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAATAACTGGAAAAA
448 TTTTATGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAATAACTGGAAAAA
71395 CGATATTAGAAGCGTG-AAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTGTTTTTACTG
513 CGATATTAGAAGCGTGAAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATT-TTTTT-CTG
*
71459 AGTATTGTGGCAAAGAATTGAGGAAAACATTTTCGGGTCAGTTTTTGCAAAATTTTAGCTGAAAT
576 AGTATTGTGGCAAAGAATTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCTGAAAT
71524 CGTGTACTAACCATCA
641 CGTGTACTAACCATCA
*
71540 TAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTTGCATCATTTTTGGTGTAAAGA
1 CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTTGCATCATTTTTGGTGTAAAGA
*
71605 CTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTT
66 CTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTT
*
71670 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGGGGAAAAAATGGAAAAATGAT
131 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGAGG-AAAAATGGAAAAATGAT
71735 ATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAAAGTATTGT
195 ATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAAAGTATTGT
* *
71800 GGCAAAAAAATGAGAACAAAGTTTGCGGATCAATTTTTAGCCGAAATCGTGTACTAACCATCACG
260 GGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACG
*
71865 GTTTTTGGCTAAAAACGCGTTTCGGGACCCTAATTCAGTTTTGCATGATTTTTGGCAGAAAGACT
325 GTTTTTGGCTAAAAACGCGTTTCGGGACCC-AGTTCAGTTTTGCATGATTTTTGGCAGAAAGACT
*
71930 CCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGATTTTAT
389 CCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGTTTTTAT
* *
71995 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAATAACTGGAAATACGATAT
454 GAGAATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAATAACTGGAAAAACGATAT
* *
72060 TAGAAGAGTGAAAAAACCCTTCAATTTCTTTTGGCATTGAATTATATATTTTTTTCTGAGTATTG
519 TAGAAGCGTGAAAAAACCCTTCAATTT-TTTTGGCGTTGAATTATATATTTTTTTCTGAGTATTG
* *
72125 TGGCAAAGAATTGCGGAAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCGTGTAC
583 TGGCAAAGAATTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCGTGTAC
72190 TAACCATCA
648 TAACCATCA
* *
72199 CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGACTCAA-TTTGCATCATTTTTGGTGTAAAAA
1 CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTTGCATCATTTTTGGTGTAAAGA
*
72263 CTCCTTGAAATATCTATATTCATCAAACTAAATCTCAGCCACATTG------A--A-------TT
66 CTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTT
*
72313 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTG-GGGAAAATGGAAAAATGATA
131 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGAGGAAAAATGGAAAAATGATA
* * *
72377 TTAGATGCGTGAAAATATCGTTAAAT-TTTTTGGCGTTGAATTATATATTTTTTCAGAGTATTGT
196 TTAGATGCGTGAAAATCTCG-TCAATCTTTTTGGCGTTGAATTATATATTTTTTCAAAGTATTGT
* * * * *
72441 GGCAAAAAAATGAGAAAAGAGTTTTCGGGTCAATTTTTTTGTCGAAATCGTGTA-TTA-CATCAC
260 GGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAA-TTTTTAGCCGAAATCGTGTACTAACCATCAC
* * * * *
72504 GGTTTGTGGCGAAAAACGCGTTTCGGGGCGCCGGTTCAGTTTTGCATGATTTTTGGCAGAAAGGC
324 GGTTTTTGGCTAAAAACGCGTTTCGGGAC-CCAGTTCAGTTTTGCATGATTTTTGGCAGAAAGAC
* *
72569 TCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCAAAATTGGATTTAAGAATTTGTTTTTA
388 TCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGTTTTTA
* * *
72634 TGAGAATCTGAATCTTCTTTCGATTTAATTAGAATTAAATTCGCATAAA-AACCTGGAAAAACGA
453 TGAGAATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGA-AAATAA-CTGGAAAAACGA
* * *
72698 TATTAGAAGCGTGAAAAAACCCTTCAAATTTTTTTGGTGTTGAATTATATA--TATTTATGAGTA
516 TATTAGAAGCGTGAAAAAACCCTTC-AATTTTTTTGGCGTTGAATTATATATTTTTTTCTGAGTA
*
72761 TTGTGGCAAAGAATTGAGGAAATAAATTTT-GGGTCAGTTTTTGCAAAATTTTAGCTGAAATTGT
580 TTGTGGCAAAGAATTGAGGAAA-AAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCGT
72825 GTACTAACCATCA
644 GTACTAACCATCA
* * * *
72838 CGATTTATGGCTAAAAACGCGTTCCGGAGCACCGGCTCAATTTTGAATCATTTTTGGTGTAAAGA
1 CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTTGCATCATTTTTGGTGTAAAGA
* * *
72903 CTCCTTGAAATATCTATATTCATCAAACAAAATCTCAGCCACATTGAATATAAAGACTTGTTTTT
66 CTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTT
* * *
72968 TCGAGAATCTAAATCTTGTTTCGATTTAATTAGTAATTAATTTGAAGGAAAAATAGGAAAAATGA
131 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTG-AGGAAAAAT-GGAAAAATGA
* **
73033 TATTAGATGCGTAGAAAATCTCGTCAATTCTTTTTGGCATTGAATTATAT-TATTTTTCTGAGTA
194 TATTAGATGCGT-GAAAATCTCGTCAA-TCTTTTTGGCGTTGAATTATATAT-TTTTTCAAAGTA
* * * * *
73097 TTGTTGACAAAAAATTGAAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAATCGTGTACTAACC
256 TTG-TGGCAAAAAAATG-AGAAAAAAGTTTGCGGGTCAATTTTTAGCCGAAATCGTGTACTAACC
*
73162 ATCACGGTTTTTTTTTGGCAAAAAACGCGTTTCGG
319 ATCACGG----TTTTTGGCTAAAAACGCGTTTCGG
73197 AGCCCGACTC
Statistics
Matches: 1526, Mismatches: 87, Indels: 83
0.90 0.05 0.05
Matches are distributed among these distances:
639 112 0.07
640 241 0.16
641 162 0.11
642 29 0.02
643 46 0.03
646 1 0.00
648 1 0.00
650 1 0.00
652 1 0.00
655 43 0.03
657 7 0.00
658 339 0.22
659 306 0.20
660 54 0.04
661 59 0.04
662 94 0.06
663 8 0.01
667 22 0.01
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (656 bp):
CAATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGCTCAATTTTGCATCATTTTTGGTGTAAAGA
CTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGAATATAAGGATTTGTTTTT
ACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGAGGAAAAATGGAAAAATGATA
TTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAAAGTATTGTG
GCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCGAAATCGTGTACTAACCATCACGG
TTTTTGGCTAAAAACGCGTTTCGGGACCCAGTTCAGTTTTGCATGATTTTTGGCAGAAAGACTCC
TTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAAGGATTTGTTTTTATGA
GAATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAATAACTGGAAAAACGATATTA
GAAGCGTGAAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTTTTCTGAGTATTGTGG
CAAAGAATTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAA
CCATCA
Done.