Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016445.1 Corchorus olitorius cultivar O-4 contig16478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25174
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Found at i:954 original size:335 final size:328
Alignment explanation
Indices: 8--1768 Score: 1743
Period size: 335 Copynumber: 5.3 Consensus size: 328
1 ACTGGAA
* * * *
8 AAAAT-ATATTAGAAGCGTGAAAAACCCTTCAATTTTTTTTGCGTTGAAATATATTGTTTTTCTG
1 AAAATGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATT-TTTTTCAG
* * * *
72 AGCATTGTGGCAAAGAATTGAGGAAAACATTTTTGGGTCAGTTTTTGCAAAATTTTAGCTGAAAT
65 AGTATTGTGGCAAAGAATTG-GGAAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAAT
* ** * * **
137 CGTGTACTAACCGTCATAATTTTTGGCTAAAAGCGCGTTCCGGAGCCCCAGATCAATTTTTTATC
129 CGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCAGTTCAATTTTGCATC
* * *
202 ATTTTTGGTGTAAAGACTCCTTGAAATATATATATATTCATCGAACCAAATATCAGCCACATTGA
194 ATTTTTGGCGTAAAGACTCCTTG-AA-ATATCTATATTCATCGAACCAAATCTCAGCCACATTGA
* * * *
267 ATATAAGGATTTGTCTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGAAATT-AATTTGAG
257 ATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG-AATTAAATTCGA-
331 GAAAAAATGG
320 -AAAAAATGG
* * * *
341 AAAAATGATATTAGATGCGTGAAAATCTCGTT-AATCTTTTTGGCGTTGAATTATATATTTCTTC
1 -AAAATGATATTAGAAGCGTGAAAAAC-CCTTCAATCTTTTTGGCGTTGAATTATAT-TTTTTTC
* * * * * *
405 AAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGG--------T-C-AAATTTTAGCCGAA
63 AGAGTATTGTGGCAAAGAATTGGGAAAAAA-TTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAA
* * * * *
460 ATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG-GACCCAATTCAGTTTTGCA
127 ATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCAGTTCAATTTTGCA
* * *
524 TGATTTTTGGCAG-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATTG
192 TCATTTTTGGC-GTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTG
* * * * * * *
588 GATTTAAGGATTT-TATTTTATGAGTATCTGAATCTTCTTTCGATTTAATTAGAAATAAATTCGA
256 AATATAAAGATTTGT-TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAATTAAATTCGA
652 AAAATAACTGG
320 AAAA-AA-TGG
* * *
663 AAATACGATATTAGAAGCGTGAAAAAACCCTTCAATTTTTTTTGGCATTGAATTATATTTTTTTC
1 AAA-ATGATATTAGAAGCGTG-AAAAACCCTTCAA-TCTTTTTGGCGTTGAATTATATTTTTTTC
* *
728 TGAGTATTGTGGCAAAGATTTGCGGAAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAA
63 AGAGTATTGTGGCAAAGAATTG-GGAAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAA
* * *
793 ATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCTGGAGCCCCGGCTCAATTTTGCA
127 ATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCAGTTCAATTTTGCA
* *
858 TCATTTTTTGGTGTAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTG
192 TCA-TTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTG
* * *
923 AATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGATTCGATTTAATTAGTAATTAATTTGGG
256 AATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG-AATTAAATT--C
988 GAAAAAAATGGG
318 GAAAAAAAT-GG
* * * * *
1000 AAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATATGTTTTTTCAA
1 AAAATGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATAT-TTTTTTCAG
* * * * * *
1065 AGTATTTTGGGAAAAAATTGAGAAAAAAGTTTGCGGGTCAA----T------TTTTAGCCGAAAT
65 AGTATTGTGGCAAAGAATTGGGAAAAAA-TTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAAT
* ** * * * * *
1120 CGTATACTATGCATCACGGTTTTTGGCTAAAAACGCATTTCGG-GACCCCAATTCAGTTTTGCAT
129 CGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAG-CCCCAGTTCAATTTTGCAT
* * * ** * * *
1184 AATTTTTGAGCG-AAAGACTCCTTGAAATATCTATACTCATCTAACTGAATCTCAGCAAAATTGG
193 CATTTTTG-GCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGA
* * *
1248 AT-TTAAGAATTTGTTTTTATGAGAATCTGAATCTTGTTTCGATTTAATTAGAATTAAATTCAAA
257 ATATAAAG-ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAATTAAATTC---
* *
1312 ATAAAAAAACAGG
318 -GAAAAAAA-TGG
** * * *
1325 AAAAACAATATTAGAAGCGTGAAAAAACCC-TCAATTTTTTTGGTGTTGAATTATATATTTTT-A
1 -AAAATGATATTAGAAGCGTG-AAAAACCCTTCAATCTTTTTGGCGTTGAATTATATTTTTTTCA
* * *
1388 TGAGTATTGTGGCAAAGATTTGAGGATAAAAA-TTTGGGGTCAGTTTTTGCAAAATTTTAGCTGA
64 -GAGTATTGTGGCAAAGAATTG-GGA-AAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTGA
* * * * * ** *
1452 AATCGTGTGCTAAGCATCACGATTTTGGGCTAAAAACGTGCTCCAAAGCCCCGGTTCAATTTTGC
126 AATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCAGTTCAATTTTGC
* * * *
1517 ATCATTTTTGGCGTAAAGAATCCTTGAAATACCCATATTCATCGAATCAAATCTCAGCCACATTG
191 ATCATTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTG
* * * *
1582 AATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGTAATTAATTTGGG
256 AATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG-AATTAAATTCGA
**
1647 GGAAAATGGG
320 AAAAAAT-GG
* * * * *
1657 AAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTAAATTATATATTTTTTTCA
1 AAAATGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAA-T-TATATTTTTTTCA
* * * *
1722 GAGTATTGTGGCAAAAAAATGAGATAAAAGTTTGTC-GGTCAATTTTT
64 GAGTATTGTGGCAAAGAATTGGGA-AAAAATTT-TCGGGTCAATTTTT
1769 AGCCGAAATC
Statistics
Matches: 1163, Mismatches: 196, Indels: 137
0.78 0.13 0.09
Matches are distributed among these distances:
320 4 0.00
321 9 0.01
322 103 0.09
323 51 0.04
324 156 0.13
325 157 0.13
326 44 0.04
327 12 0.01
329 1 0.00
330 6 0.01
331 36 0.03
332 15 0.01
333 95 0.08
334 60 0.05
335 360 0.31
336 41 0.04
337 7 0.01
338 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (328 bp):
AAAATGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTGGCGTTGAATTATATTTTTTTCAGA
GTATTGTGGCAAAGAATTGGGAAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTGAAATCG
TGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCAGTTCAATTTTGCATCAT
TTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGAATAT
AAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAATTAAATTCGAAAAAAA
TGG
Found at i:1527 original size:659 final size:652
Alignment explanation
Indices: 4--1799 Score: 2661
Period size: 658 Copynumber: 2.7 Consensus size: 652
1 ACT
* * *
4 GGAAAAA-ATATATTAGAAGCGTG-AAAAACCCTTCAATTTTTTTTGCGTTGAAATATATTGTTT
1 GGAAAAACA-ATATTAGAAGCGTGAAAAAACCCTTCAATTTTTTTGGCGTTGAATTATA-TATTT
* * * *
67 TTCTGAGCATTGTGGCAAAGAATTGAGGAAAACATTTTTGGGTCAGTTTTTGCAAAATTTTAGCT
64 TTCTGAGTATTGTGGCAAAGATTTGAGGAAAA-AATTTCGGGTCAGTTTTTGCAAAATTTTAGCT
* ** * *
132 GAAATCGTGTACTAACCGTCATAATTTTTGGCTAAAAGCGCGTTCCGGAGCCCCAGATCAATTTT
128 GAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGATCAATTTT
** * *
197 TTATCATTTTTGGTGTAAAGACTCCTTGAAATATATATATATTCATCGAACCAAATATCAGCCAC
193 GCATCATTTTTGGTGTAAAGACTCCTTG-AA-ATATCTATATTCATCGAACCAAATCTCAGCCAC
* * * *
262 ATTGAATATAAGGATTTGTCTTTACGGGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
256 ATTGAATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATT
* * *
327 TGAGGAAAAAATGGAAAAATGATATTAGATGCGTGAAAATCTCGTTAATCTTTTTGGCGTTGAAT
321 TGGGGAAAAAATGGGAAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAAT
* *
392 TATATATTTCTTCAAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAAATTTTAGCC
386 TATATATTTTTTCAAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCC
* *
457 GAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCCAATTCAGTTTTG
451 GAAATCGT-TACT-ATCATCACGGTTTTTGGCTAAAAACGCATTTCGGGACCCAATTCAGTTTTG
* * *
522 CATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCAAATT
514 CATAATTTTTGGCAGAAAGACTCCTTGAAATATCTATACTCATCTAACCAAATCTCAGCAAAATT
* * *
587 GGATTTAAGGATTTTATTTTATGAGTATCTGAATCTTCTTTCGATTTAATTAGAAATAAATTCGA
579 GGATTTAAGAATTTTATTTTATGAGAATCTGAATCTTCTTTCGATTTAATTAGAAATAAATTCAA
* *
652 AAAATAACT
644 AAAAAAACA
* * * *
661 GGAAATACGATATTAGAAGCGTGAAAAAACCCTTCAATTTTTTTTGGCATTGAATTATATTTTTT
1 GGAAAAACAATATTAGAAGCGTGAAAAAACCCTTCAA-TTTTTTTGGCGTTGAATTATATATTTT
* *
726 TCTGAGTATTGTGGCAAAGATTTGCGGAAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCTG
65 TCTGAGTATTGTGGCAAAGATTTGAGGAAAAAA-TTTCGGGTCAGTTTTTGCAAAATTTTAGCTG
* *
791 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCTGGAGCCCCGGCTCAATTTTG
129 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGATCAATTTTG
*
856 CATCATTTTTTGGTGTAAAGACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAT
194 CATCA-TTTTTGGTGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAT
*
921 TGAATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGATTCGATTTAATTAGTAATTAATTTG
258 TGAATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTG
986 GGGAAAAAAATGGGAAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATT
323 GGG-AAAAAATGGGAAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATT
* * * *
1051 ATATGTTTTTTCAAAGTATTTTGGGAAAAAATTGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCG
387 ATATATTTTTTCAAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCG
1116 AAATCGTATACTATGCATCACGGTTTTTGGCTAAAAACGCATTTCGGGACCCCAATTCAGTTTTG
452 AAATCGT-TACTAT-CATCACGGTTTTTGGCTAAAAACGCATTTCGGGA-CCCAATTCAGTTTTG
**
1181 CATAATTTTTGAGC-GAAAGACTCCTTGAAATATCTATACTCATCTAACTGAATCTCAGCAAAAT
514 CATAATTTTTG-GCAGAAAGACTCCTTGAAATATCTATACTCATCTAACCAAATCTCAGCAAAAT
* *
1245 TGGATTTAAGAATTTGT-TTTTATGAGAATCTGAATCTTGTTTCGATTTAATTAGAATTAAATTC
578 TGGATTTAAGAATTT-TATTTTATGAGAATCTGAATCTTCTTTCGATTTAATTAGAAATAAATTC
1309 AAAATAAAAAAACA
642 --AA-AAAAAAACA
*
1323 GGAAAAACAATATTAGAAGCGTGAAAAAACCC-TCAATTTTTTTGGTGTTGAATTATATATTTTT
1 GGAAAAACAATATTAGAAGCGTGAAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTT
* *
1387 ATGAGTATTGTGGCAAAGATTTGAGGATAAAAATTTGGGGTCAGTTTTTGCAAAATTTTAGCTGA
66 CTGAGTATTGTGGCAAAGATTTGAGGA-AAAAATTTCGGGTCAGTTTTTGCAAAATTTTAGCTGA
* * * * * ** *
1452 AATCGTGTGCTAAGCATCACGATTTTGGGCTAAAAACGTGCTCCAAAGCCCCGGTTCAATTTTGC
130 AATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGATCAATTTTGC
* * * * *
1517 ATCATTTTTGGCGTAAAGAATCCTTGAAATACCCATATTCATCGAATCAAATCTCAGCCACATTG
195 ATCATTTTTGGTGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTG
*
1582 AATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAGTAATTAATTTGGG
260 AATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGGG
* *
1647 G-GAAAATGGGAAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTAAATTATA
325 GAAAAAATGGGAAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATA
* *
1711 TATTTTTTTCAGAGTATTGTGGCAAAAAAATGAGATAAAAGTTTGTC-GGTCAATTTTTAGCCGA
390 TA-TTTTTTCAAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTG-CGGGTCAATTTTTAGCCGA
*
1775 AATCGTTACTAATTATCACGGTTTT
453 AATCGTTACT-ATCATCACGGTTTT
1800 AAATTTTTGG
Statistics
Matches: 1034, Mismatches: 88, Indels: 34
0.89 0.08 0.03
Matches are distributed among these distances:
657 193 0.19
658 362 0.35
659 289 0.28
660 143 0.14
661 10 0.01
662 37 0.04
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (652 bp):
GGAAAAACAATATTAGAAGCGTGAAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTT
CTGAGTATTGTGGCAAAGATTTGAGGAAAAAATTTCGGGTCAGTTTTTGCAAAATTTTAGCTGAA
ATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGCCCCGGATCAATTTTGCA
TCATTTTTGGTGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGA
ATATAAAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGTAATTAATTTGGGG
AAAAAATGGGAAAATGATATTAGATGCGTGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATAT
ATTTTTTCAAAGTATTGTGGCAAAAAAATGAGAAAAAAGTTTGCGGGTCAATTTTTAGCCGAAAT
CGTTACTATCATCACGGTTTTTGGCTAAAAACGCATTTCGGGACCCAATTCAGTTTTGCATAATT
TTTGGCAGAAAGACTCCTTGAAATATCTATACTCATCTAACCAAATCTCAGCAAAATTGGATTTA
AGAATTTTATTTTATGAGAATCTGAATCTTCTTTCGATTTAATTAGAAATAAATTCAAAAAAAAA
CA
Found at i:3779 original size:984 final size:979
Alignment explanation
Indices: 2020--4887 Score: 2541
Period size: 984 Copynumber: 2.9 Consensus size: 979
2010 TTTCCAAATC
* * *
2020 AGTTTTATCCAAAATCGTGTACGTCACGGTTTTTTTGCTAAAAACGCATTTCGGGGCCTCGACTC
1 AGTTTTAGCCAAAATCGTGTACATCACGGTTTTATTGCTAAAAACGCATTTCGGGGCCTCGACTC
* * * * * *
2085 AGTTTTGCATGGTTTTTGACATAAATATTGCTTGAAATATCTATAATTTTCTAACCAAATCTCAA
66 AATTTTGCATGGTTTTTGACATAAAGACTCCTTGAAATATCTATAATTATATAACCAAATCTCAA
**
2150 CCGCATTGCATTTAAGGATTTGTTTTTACGATAATCTGAATCTTGTTTCAATTTAATAAAAAAAA
131 CAACATTGCATTTAAGGATTTGTTTTTACGATAATCTGAATCTTGTTTCAATTTAAT-AAAAAAA
*
2215 TCGGGAAAAACATGGACAAATGATATTAGAATCGTAAAAAACCCTTCAACTTTTTTGTCGTCGAA
195 T--GG---AACAT-GAC-AACGATATTAGAATCGTAAAAAACCCTTCAACTTTTTTGTCGTCGAA
*
2280 TTATATATTTTTTCTGAGTATTGTAGCAAAAAATTGGGGAAAAACTATTGAGGTCAGTTTTTGCA
253 TTATATATTTTTTCTGAGTATTGTAGCAAAAAATTGAGG--AAACTATTGAGGTCAGTTTTTGCA
** * *
2345 AAATTTTTGCCGAAATCCGGTTTTTGGCTAAAAACGCGTCCCGGAGTCTCGGCTCAATTTTGCAT
316 AAATTTTACCCGAAATCCGGTTTTTGGCTAAAAACGCGTCCCGGAGCCACGGCTCAATTTTGCAT
* * *
2410 GAATTTTGGCACAAAGACTCCTTGAAATATCTATATTTATCGAACAAAATCTCAGCCACATTGGA
381 GAATTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCAAATTGGA
** *
2475 TATAAGGATTTTTTTGACATGGATCTGAATCTTGTTTCGATTTAATTTAAAATTAATTCGGGAAA
446 TATAAGGATTTTTTTGACATGGATCTGAATCTTGTTTAAATTTAATTTAAAATTAATTCGAGAAA
* * *
2540 AAAGGAAAATGATATTAGAAACAAGAAAATCCCGTCAATCATTTTGGCGTTTAATTATATGTTTT
511 AAA-GAAAACGATATTAGAAACAAGAAAATCCCGTCAATCATTTTGGCGTTGAATTATATATTTT
* * * *
2605 TCCTGACTATCATGGCAAAAAATTGAGAAAAAAATTTTCTGGTAAGTTTTTAAGCCGAAATCGTG
575 TCCAGACAATCATAGCAAAAAATTGAGAAAAAAATTTTCTGGTAAGTTTTTAAGCCAAAATCGTG
* * * * *
2670 TACTAACCATCACACTTTTTGGTTATAAACGCGTTTCGGGGTCTCGACTCAGTTTTGCATGGTTT
640 TACT-A--ATCACACTTTTTGGCTAAAAACGCATTTCGGGGTCCCGACTCAGTTTTGCATGATTT
* * *
2735 TTGGCCTAAAGACTCCTTGAAATATATTTAATCATCTAACCAAGTCTTAGCCACATTGGATTTAA
702 TTGGCCTAAAGACTCCTTGAAATATATATAATCATCTAACCAAATCTTAGCCAAATTGGATTTAA
* * * *
2800 TGATTTGCTTTTACAAGCATCTGAATCTTGTTTCCATTTAATTAGAAATAAATTCGGAGAAACAT
767 GGATTTGCTTTTACAAGCATCTGAATATTGTATCCATTTAATTAGAAATAAATTCGG-GAAAAAT
* *
2865 GGAAAAACAATATTAGAAGCGTGAAAAACCCTTCAAT-TTTTTTGTTGTTCAATTATATATTTTC
831 GGAAAAACAATATTAGAAGCGTGAAAAACCCTTCAATGTTTTTTG-CGTTCAATAATATATTTT-
2929 TCTGAGTATTGTGGCAATCTTTTTGGCAATGAATTATTTAATTTTTCTGAGTATTGTGGCAAAAA
894 TCTGAGTATTGTGGCAATCTTTTTGGCAATGAATTATTTAATTTTTCTGAGTATTGTGGCAAAAA
2994 TTGAGGAAAAATTTTCGGGTT
959 TTGAGGAAAAATTTTCGGGTT
* * *
3015 AGTTTTAGCCGAAATCGTGTATGCATCACGGTTTTCATTGCTAAAAATGCATTTTGGGGCCTCGA
1 AGTTTTAGCCAAAATCGTGTA--CATCACGGTTTT-ATTGCTAAAAACGCATTTCGGGGCCTCGA
* ** *
3080 CTCAATTTTGCATGGTTTTTGGCATTGAGACTCCTTGACATATCTATAATTATATAACCAAATCT
63 CTCAATTTTGCATGGTTTTTGACATAAAGACTCCTTGAAATATCTATAATTATATAACCAAATCT
* * * * * * *
3145 CAGCAACATTGGATTTAAGGATTTGTTTTTACGATCATCTGAATTTTGTTTCGATTTAAT-TAGA
128 CAACAACATTGCATTTAAGGATTTGTTTTTACGATAATCTGAATCTTGTTTCAATTTAATAAAAA
* * * * * *
3209 AAT-G-A-AT-TC-ACGATATTAGAATCGTAAAAAACGCTTCCATTTTTTTGTCTTTGAATTATA
193 AATGGAACATGACAACGATATTAGAATCGTAAAAAACCCTTCAACTTTTTTGTCGTCGAATTATA
* * * *
3269 TATTTTTTCTGAGTATTTTGGTAAAAAATTGAGG-AACTTTTCG-GGTCAGTTTTTTGCAAAATT
258 TATTTTTTCTGAGTATTGTAGCAAAAAATTGAGGAAACTATT-GAGGTCAG-TTTTTGCAAAATT
* * * *
3332 TTACCCGAATTCATGTACCTCACGGTTTTTTGCT-AAAACGCGTTCTGGAGCCACGGCTCATTTT
321 TTACCCG-A---A---A--TC-CGGTTTTTGGCTAAAAACGCGTCCCGGAGCCACGGCTCAATTT
* *
3396 TGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAATC-AAATCCCAGCCAA
376 TGCATGAATTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAA-CAAAATCCCAGCCAA
*
3460 ATTGGATATAAGGATTTGTTTTTACGA-GCG-TCTGAATCTTGTTTAAATTTAA-TTAGAAATTA
440 ATTGGATATAAGGATTT-TTTTGAC-ATG-GATCTGAATCTTGTTTAAATTTAATTTA-AAATTA
* ** *
3522 ATTCAGAGAAAAAA-AAAACGATATTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAAT
501 ATTC-GAGAAAAAAGAAAACGATATTAGAAACAAGAAAATCCCGTCAATCATTTTGGCGTTGAAT
* * ** * *
3586 TATATATTTTTTCAGAGAATTGTAGCAAAAAATTG-GGAAAAAGTTTTC-GAGTCAA-TTTTT-A
565 TATATATTTTTCCAGACAATCATAGCAAAAAATTGAGAAAAAAATTTTCTG-GT-AAGTTTTTAA
* ** *
3647 GCCAAAATCGTGTA-T-GTCACGGTTTTTGGCTAAAAACGCATTTCGGGGTCCCGGCTCAGTTTT
628 GCCAAAATCGTGTACTAATCACACTTTTTGGCTAAAAACGCATTTCGGGGTCCCGACTCAGTTTT
* * * * *
3710 GCATGATTTTTGGCAC-AAAGACTCGTTGAAATATCTATATTTATCTAAGCAAATCTTAGCCAAA
693 GCATGATTTTTGGC-CTAAAGACTCCTTGAAATATATATAATCATCTAACCAAATCTTAGCCAAA
* * *
3774 TTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATATTGTATCGATTTAATTAGAAATAAATTC
757 TTGGATTTAAGGATTTGCTTTTACAAGCATCTGAATATTGTATCCATTTAATTAGAAATAAATTC
* * *
3839 GGGAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTTCAATGTTTTTTGCGTTGAATAAT
822 GGGAAAAATGGAAAAACAATATTAGAAGCGTGAAAAACCCTTCAATGTTTTTTGCGTTCAATAAT
* * **** * *
3904 ATATTTTTTTTAGTATTGTGGCAA-AGAATTGAGGAA--AA--A---AA--ATTC-G-G----GT
887 ATATTTTTCTGAGTATTGTGGCAATCTTTTTG-GCAATGAATTATTTAATTTTTCTGAGTATTGT
** * ***
3953 --C--AGTTTTAGCCGAAA---TC--G-T
951 GGCAAAAATTGAGGAAAAATTTTCGGGTT
* *
3972 -G---TA--C--AA-C---T--ATCACGGTTTT-TCTGCTAAAAACGCGTTTCGGGGCCTCTACT
1 AGTTTTAGCCAAAATCGTGTACATCACGGTTTTAT-TGCTAAAAACGCATTTCGGGGCCTCGACT
* * * *
4022 CAATTTTGCATGGTTTTTGGCATAAATACTCCTTGAAATATCTATAATCATCTAACCAAATCTCA
65 CAATTTTGCATGGTTTTTGACATAAAGACTCCTTGAAATATCTATAATTATATAACCAAATCTCA
* * ** * **
4087 ACCAA-ATTGGATATAAGGATTTGTTTTTTACGAGCATATGAATCTTGTTTTGATTTAATTAGAA
130 A-CAACATTGCATTTAAGGATTTG-TTTTTACGATAATCTGAATCTTGTTTCAATTTAA-TA-AA
* * * * * * * * * * ** *
4151 ATTAATTCAGGAAAAAAAGGAAAAATGATTTTAGAAGCATGAAAATCCAGTCAA-TCTTTTTGGC
191 A--AAAT--GG---AACATG-ACAACGATATTAGAATCGTAAAAAACCCTTCAACT-TTTTTGTC
* * * * ** **
4215 GTTGAATTATTTAATTTTTCTGAGTATTG-AGGCAAAGAATTGAGGAAAGAATTTTCGTGTCAGT
247 GTCGAATTATATATTTTTTCTGAGTATTGTA-GCAAAAAATTGAGGAAACTA-TTGAG-GTCAGT
* * * * * ** *
4279 TTTAGCCCAAATCGTGTT--CTGACCATCACGGTTTTTTGCTAAAAACGCGTTTC-GAGGCCTCG
309 TTTTG-CAAAAT--T-TTACCCGA-AATC-CGGTTTTTGGCTAAAAACGCGTCCCGGA-GCCACG
* ** * * * * * *
4341 ACTCAATTTTGCATGGTTTTTGGCATAGAGATTCCTTGAAATATCTATAATCATCTAACCAAATC
367 GCTCAATTTTGCATGAATTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACAAAATC
* * * * **
4406 TCAG-CAACATTGGATTTAAGGATTTGTTTTTACGAT-CATCTGAATCTTGTTTCGATTTAA-TT
432 CCAGCCAA-ATTGGATATAAGGATTT-TTTTGAC-ATGGATCTGAATCTTGTTTAAATTTAATTT
* ** * * ** * *
4468 AGAAATGAATTC-AGAAAACTTGGAAGAATGATATTAGAAGCGTGAAAATCTCGTCAATCTTTTT
494 A-AAATTAATTCGAGAAAA--AAGAA-AACGATATTAGAAACAAGAAAATCCCGTCAATC-ATTT
* * ** *
4532 TGGCGTTGAATTGTATATTTTTTCC-GAGAATTGTGGCAAAAAATTGAGAAAAAAAGTTTTC-GA
554 TGGCGTTGAATTATATA-TTTTTCCAGACAATCATAGCAAAAAATTGAGAAAAAAA-TTTTCTG-
* * * ** * *
4595 GTCAA-TTTTT-AGCCAAAATCATGTACTCATTACGGTTTTTGGCTTAAAACGCGTTTC-GGGTC
616 GT-AAGTTTTTAAGCCAAAATCGTGTACTAATCACACTTTTTGGCTAAAAACGCATTTCGGGGTC
* * * * **
4657 CCGGCTCAGTTTTGCATGATTTTTGGCAC-AAATACTCCTTGAAATATCTATAATTATCTATTCA
680 CCGACTCAGTTTTGCATGATTTTTGGC-CTAAAGACTCCTTGAAATATATATAATCATCTAACCA
* * * * * *
4721 AATCTTAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAGT
744 AATCTTAGCCAAATTGGATTTAAGGATTTGCTTTTACAAGCATCTGAATATTGTATCCATTTAAT
* * * *
4786 TAGAAATAAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTTAAAAACCTTTCAAT-TTTTT
809 TAGAAATAAATTCGGGAAAAATGGAAAAACAATATTAGAAGCGTGAAAAACCCTTCAATGTTTTT
* * *
4850 TGGCATTGAATTATATATTCTTT-TGAGTATTGTGGCAA
874 T-GCGTTCAATAATATATT-TTTCTGAGTATTGTGGCAA
4888 AGAATTAAGG
Statistics
Matches: 1593, Mismatches: 207, Indels: 181
0.80 0.10 0.09
Matches are distributed among these distances:
939 1 0.00
940 101 0.06
941 44 0.03
942 1 0.00
944 1 0.00
945 1 0.00
946 3 0.00
948 1 0.00
949 3 0.00
951 1 0.00
952 6 0.00
953 24 0.02
954 132 0.08
955 3 0.00
956 33 0.02
957 105 0.07
958 16 0.01
959 45 0.03
960 226 0.14
961 30 0.02
962 1 0.00
963 10 0.01
965 1 0.00
967 2 0.00
971 1 0.00
972 1 0.00
973 3 0.00
975 2 0.00
978 1 0.00
980 2 0.00
981 15 0.01
982 37 0.02
983 57 0.04
984 236 0.15
985 1 0.00
986 2 0.00
988 3 0.00
989 17 0.01
990 18 0.01
991 177 0.11
992 49 0.03
993 11 0.01
995 19 0.01
996 5 0.00
997 11 0.01
998 134 0.08
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (979 bp):
AGTTTTAGCCAAAATCGTGTACATCACGGTTTTATTGCTAAAAACGCATTTCGGGGCCTCGACTC
AATTTTGCATGGTTTTTGACATAAAGACTCCTTGAAATATCTATAATTATATAACCAAATCTCAA
CAACATTGCATTTAAGGATTTGTTTTTACGATAATCTGAATCTTGTTTCAATTTAATAAAAAAAT
GGAACATGACAACGATATTAGAATCGTAAAAAACCCTTCAACTTTTTTGTCGTCGAATTATATAT
TTTTTCTGAGTATTGTAGCAAAAAATTGAGGAAACTATTGAGGTCAGTTTTTGCAAAATTTTACC
CGAAATCCGGTTTTTGGCTAAAAACGCGTCCCGGAGCCACGGCTCAATTTTGCATGAATTTTGGC
ACAAAGACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCCAAATTGGATATAAGGATT
TTTTTGACATGGATCTGAATCTTGTTTAAATTTAATTTAAAATTAATTCGAGAAAAAAGAAAACG
ATATTAGAAACAAGAAAATCCCGTCAATCATTTTGGCGTTGAATTATATATTTTTCCAGACAATC
ATAGCAAAAAATTGAGAAAAAAATTTTCTGGTAAGTTTTTAAGCCAAAATCGTGTACTAATCACA
CTTTTTGGCTAAAAACGCATTTCGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCCTAAAGACT
CCTTGAAATATATATAATCATCTAACCAAATCTTAGCCAAATTGGATTTAAGGATTTGCTTTTAC
AAGCATCTGAATATTGTATCCATTTAATTAGAAATAAATTCGGGAAAAATGGAAAAACAATATTA
GAAGCGTGAAAAACCCTTCAATGTTTTTTGCGTTCAATAATATATTTTTCTGAGTATTGTGGCAA
TCTTTTTGGCAATGAATTATTTAATTTTTCTGAGTATTGTGGCAAAAATTGAGGAAAAATTTTCG
GGTT
Found at i:4084 original size:319 final size:319
Alignment explanation
Indices: 1995--8051 Score: 4208
Period size: 321 Copynumber: 18.9 Consensus size: 319
1985 TTTTGGCCAA
*** * * *
1995 AATTGAGGAAAAAAATTTCCAAATCAGTTTTATCCAAAATCGTGT---AC-GTCACGGTTTTTTT
1 AATTGAGGAAAAAAATTT-CGGGTCAGTTTTAGCCGAAATCGTGTACAACTATCACGG-TTTTTT
* * * * * *
2056 GCTAAAAACGCATTTCGGGGCCTCGACTCAGTTTTGCATGGTTTTTGACATAAATATTGCTTGAA
64 GCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGAA
* * * * **
2121 ATATCTATAATT-TTCTAACCAAATCTCAACCGCATTGCATTTAAGGATTTGTTTTTACGATAAT
129 ATATCTAT-ATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
* * * * * *
2185 CTGAATCTTGTTTCAATTTAA-TA-AAA-AAAATCGGGAAAAACATGGACAAATGATATTAGAAT
193 CTGAATCTTGTTTCGATTTAATTAGAAATTAATTC-GGAAAAA-ATGGAAAAACGATATTAGAAG
* * * * * *
2247 CGTAAAAAACCCTTCAA-CTTTTTTGTCGTCGAATTATATATTTTTTCTGAGTATTGTAGCAAAA
256 CGTGAAAAACCCGTCAATC-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
* * * * * * *
2311 AATTG-GGGAAAAACTATT-GAGGTCAGTTTTTG-CAAAAT-TTTTGCCGAA--ATC-CGGTTTT
1 AATTGAGGAAAAAAAT-TTCG-GGTCAGTTTTAGCCGAAATCGTGT-AC-AACTATCACGGTTTT
* ** * * * * * *
2369 TGGCTAAAAACGCGTCCCGGAGTCTCGGCTCAATTTTGCATGAATTTTGGCACAAAGACTCCTTG
62 TTGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTG
* * * * * *
2434 AAATATCTATATTTATCGAACAAAATCTCAGCCACATTGGATATAAGGATTT-TTTTGAC-ATGG
127 AAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGA-GC
*
2497 ATCTGAATCTTGTTTCGATTTAATTTA-AAATTAATTCGGGAAAAAA-GG-AAAATGATATTAGA
191 ATCTGAATCTTGTTTCGATTTAA-TTAGAAATTAATTC-GGAAAAAATGGAAAAACGATATTAGA
* ** * * * * * * **
2559 AACAAGAAAATCCCGTCAATCATTTTGGCGTTTAATTATATGTTTTTCCTGACTATCATGGCAAA
254 AGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAA
*
2624 A
319 G
* * * **
2625 AATTGA-GAAAAAAATTTTCTGGTAAGTTTTTAAGCCGAAATCGTGTACTAACCATCACACTTTT
1 AATTGAGGAAAAAAA-TTTCGGGTCAG-TTTT-AGCCGAAATCGTGTAC-AACTATCACGGTTTT
* * * * * *
2689 TGGTTATAAACGCGTTTCGGGGTCTCGACTCAGTTTTGCATGGTTTTTGGCCTAAAGACTCCTTG
62 TTGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTG
* * * * * * * *
2754 AAATATATTTAATCATCTAACCAAGTCTTAGCCACATTGGATTTAATGATTTGCTTTTACAAGCA
127 AAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* * * *
2819 TCTGAATCTTGTTTCCATTTAATTAGAAATAAATTCGGAGAAACATGGAAAAACAATATTAGAAG
192 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGA-AAAAATGGAAAAACGATATTAGAAG
* * ** * * **
2884 CGTGAAAAACCCTTCAATTTTTTTGTTGTTCAATTATATATTTTCTCTGAGTATTGTGGCAATCT
256 CGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAA-AG
** * * * * ** * * * * * *
2949 TTTTG-GCAATGAATTATTTAATTTTTCTGAGT-A-TTGTGGCAAAAATTGAGGAAAAATTTTC-
1 AATTGAGGAA--AA--A---AA--TTTC-GGGTCAGTTTTAGCCGAAATCG-TGTACAACTATCA
* ** * * * * ****
3010 GGGTTAGTTTTAGCCGAAATCGTGTAT----GCATC-ACGGTTTTCATTGCTAAAAATGCATTTT
55 CGGTT--TTTT-GCTAAAAACGCGTTTCGGGGCCTCGACTCAGTT--TTGC-----ATG-ATTTT
* * * * * * * * * * * * ***
3070 GGGGCCT--CGACTCAATTTTG-CATGGTTTTTGGCATTGAGACTCCTTGA-CATATCTATAATT
109 -TGGCATAAAGACTC---CTTGAAAT-ATCTAT---ATT--CA-T-C-TAACCAAATCT-CAGCC
* *** * * * * ** * * * *
3131 ATATAACCAAATCTCAGCAACATTGGATTTA--AGGATTTG--T-TT-TTACGA--TCATCT-GA
160 ACAT---TGGATTTAAG-GA-TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT-TAGA
* ** * ** * * * * * *
3187 ATTTTGTTTCGATTTAATTAGAAAT-GAATTCACGATATTAGAATCGTAAAAAACGCTTCCATTT
219 A-ATTAATTCG---GAA--A-AAATGGAA-AAACGATATTAGAAGCGTGAAAAACCCGTCAATCT
* * * * *
3251 TTTTGTCTTTGAATTATATATTTTTTCTGAGTATTTTGGTAAAA
276 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
** * * *
3295 AATTGAGG---AACTTTTCGGGTCAGTTTTTTG-CAAAAT--TTTACCCGAATTCATGTACCTCA
1 AATTGAGGAAAAAAATTTCGGGTCAG-TTTTAGCCGAAATCGTGTA--C-AA--C---TA--TCA
* * * * **
3354 CGGTTTTTTGCT-AAAACGCG-TTCTGGAGCCACGGCTCATTTTTGCATGATTTTTGGCGCAAAG
55 CGGTTTTTTGCTAAAAACGCGTTTC-GGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAG
* * * * *
3417 ACTCCTTGAAATATCTATATTCATCGAATCAAATCCCAGCCAAATTGGATATAAGGATTTGTTTT
119 ACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTT
* ** *
3482 TACGAGCGTCTGAATCTTGTTTAAATTTAATTAGAAATTAATTCAGAGAAAAA---AAAAACGAT
184 TACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGA-AAAAATGGAAAAACGAT
* * *
3544 ATTAGAAGCGTGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCAGAGAATTGT
248 ATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
* *
3609 AGCAAAA
313 GGCAAAG
** * * * * *
3616 AATTG-GGAAAAAGTTTTCGAGTCAATTTTTAGCCAAAATCGTGT---A-TGTCACGGTTTTTGG
1 AATTGAGGAAAAAAATTTCGGGTC-AGTTTTAGCCGAAATCGTGTACAACTATCACGGTTTTTTG
* * * *
3676 CTAAAAACGCATTTCGGGGTCC-CGGCTCAGTTTTGCATGATTTTTGGCACAAAGACTCGTTGAA
65 CTAAAAACGCGTTTCGGGG-CCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGAA
* * * *
3740 ATATCTATATTTATCTAAGCAAATCTTAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCATC
129 ATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATC
* * * *
3805 TGAATATTGTATCGATTTAATTAGAAATAAATTCGGGAAAAATGGAAAAACGATATTAGAAGCGT
194 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGT
** * * * *
3870 GAAAAACCTTTCAATGTTTTTTGCGTTGAATAATATATTTTTT-TTAGTATTGTGGCAAAG
259 GAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
*
3930 AATTGAGGAAAAAAAATTCGGGTCAGTTTTAGCCGAAATCGTGTACAACTATCACGGTTTTTCTG
1 AATTGAGGAAAAAAATTTCGGGTCAGTTTTAGCCGAAATCGTGTACAACTATCACGGTTTTT-TG
* * * *
3995 CTAAAAACGCGTTTCGGGGCCTCTACTCAATTTTGCATGGTTTTTGGCATAAATACTCCTTGAAA
65 CTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGAAA
* * * * *
4060 TATCTATAATCATCTAACCAAATCTCAACCAAATTGGATATAAGGATTTGTTTTTTACGAGCATA
130 TATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTG-TTTTTACGAGCATC
* * * * *
4125 TGAATCTTGTTTTGATTTAATTAGAAATTAATTCAGGAAAAAAAGGAAAAATGATTTTAGAAGCA
194 TGAATCTTGTTTCGATTTAATTAGAAATTAATTC-GGAAAAAATGGAAAAACGATATTAGAAGCG
* * * * *
4190 TGAAAATCCAGTCAATCTTTTTGGCGTTGAATTATTTAATTTTTCTGAGTATTGAGGCAAAG
258 TGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
* * * * * * *
4252 AATTGAGGAAAGAATTTTCGTGTCAGTTTTAGCCCAAATCGTGTTCTGACCATCACGGTTTTTTG
1 AATTGAGGAAAAAAATTTCGGGTCAGTTTTAGCCGAAATCGTGTAC-AACTATCACGGTTTTTTG
* * * * *
4317 CTAAAAACGCGTTTCGAGGCCTCGACTCAATTTTGCATGGTTTTTGGCATAGAGATTCCTTGAAA
65 CTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGAAA
* * *
4382 TATCTATAATCATCTAACCAAATCTCAGCAACATTGGATTTAAGGATTTGTTTTTACGATCATCT
130 TATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * ** * *
4447 GAATCTTGTTTCGATTTAATTAGAAATGAATTCAGAAAACTTGGAAGAATGATATTAGAAGCGTG
195 GAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTG
* * * * * *
4512 AAAATCTCGTCAATCTTTTTTGGCGTTGAATTGTATATTTTTTCCGAGAATTGTGGCAAAA
260 AAAAACCCGTCAATC-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
* * * * * *
4573 AATTGA-GAAAAAAAGTTTTCGAGTCAATTTTTAGCCAAAATCATGTAC-TC-ATTACGGTTTTT
1 AATTGAGGAAAAAAA--TTTCGGGTC-AGTTTTAGCCGAAATCGTGTACAACTATCACGGTTTTT
* * * * * *
4635 GGCTTAAAACGCGTTTCGGGTCC-CGGCTCAGTTTTGCATGATTTTTGGCACAAATACTCCTTGA
63 TGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGA
** * *
4699 AATATCTATAATT-ATCTATTCAAATCTTAGCCAAATTGGATTTAAGGATTTGTTTTTACGAGCA
128 AATATCTAT-ATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
* *
4763 TCTGAATCTTGTTTCGATTTAGTTAGAAATAAATTCGGAAAAAATGGAAAAACGATATTAGAAGC
192 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGATATTAGAAGC
* ** * * *
4828 GTTAAAAACCTTTCAATTTTTTTGGCATTGAATTATATATTCTTT-TGAGTATTGTGGCAAAG
257 GTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
* * * *
4890 AATTAAGGGAAAAAATTTACGGGTAAGTTTTAGCCGAAATCGTGTATTAACTATCACGGTTTTTC
1 AATTGAGGAAAAAAATTT-CGGGTCAGTTTTAGCCGAAATCGTGTA-CAACTATCACGGTTTTT-
* * *
4955 TGCTAAAAACGCGTTTCGGGGCCTCTACTCAGTTTTGCATGGTTTTCGGCATAAAGACTCCTTGA
63 TGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGA
* * * * *
5020 AAAATCTATAATCATCTAACCAAATCTCAACCAAATTGGATATAAGGATTTGTTTTTACGAGCAT
128 AATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
* * *
5085 ATGAATCTTGTTTCGATTTAATCAGAAATTAATTCGGGAAAAAAAAGGAAAAACGATATTAGAAG
193 CTGAATCTTGTTTCGATTTAATTAGAAATTAATTC-GG-AAAAAATGGAAAAACGATATTAGAAG
* * ** * * * * *
5150 CATGAAAATCCAATAAATCTTTTTGGCGTTGAATTATTTAATTTTTCTCAGTATTATGGCAAAG
256 CGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
* * * *
5214 AATTGAGGAAAAAATTTTCGGGTTAGTTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTTG
1 AATTGAGGAAAAAAATTTCGGGTCAGTTTTAGCCGAAATCGTGTAC-AACTATCACGGTTTTTTG
* * * *
5279 CTAAAAAGGCGTTTC-GGGTCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAAACTCCTTGAAA
65 CTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGAAA
* * ** * **
5343 TACCTATAATT-ATTTAACCAAATCTCATTCACATTGGACTTAAGGATTTGTTTTTACGATAATC
130 TATCTAT-ATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATC
* * * * * ** *
5407 TGAATCTTGTTTCAATTTAATTAAAAATAAATTC-GAAGAAAAAGGGAAATTGATATTGGAAGCG
194 TGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAA-AAAATGGAAAAACGATATTAGAAGCG
* * * * *
5471 TG-AAAA------AA------------T--A-TATATA--TTTTATAAATATTTTGCCAAAG
258 TGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
** * * * ** *
5509 AATTGAGGAAAAATTTTTCGGGTCATTTTTTG-CAAAATTTTATCCAAAATCATTTACTCATCAC
1 AATTGAGGAAAAAAATTTCGGGTCAGTTTTAGCCGAAATCGTGT-----A-CA---ACT-ATCAC
* * * * * * ** *
5573 GATTTTTGGTTAAAAACGCGTTCCAGGGCCTCGGCTCAGTTTTGCATGATTTTTGGTGTAAAGAT
56 GGTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGAC
* * * * *
5638 TCCTTGAAATATCTATATTCAT-TGAACAAAATCCCAGCCACATTCGATTTGACGATTT-TTTTT
121 TCCTTGAAATATCTATATTCATCT-AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTT
* * * *
5701 ACGAGCATATGAATTTTGTTTCGATTTAATTAGAAATTAATTC-GAAAAAATGGGAAAATGATAT
185 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGATAT
* ** * ** *
5765 TAGAAGCGCGAAAAACCTTTTAATCTTCATGGCGTTGAATTATATATTTTTTATGAGTATTGTGG
250 TAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGG
5830 C-AAG
315 CAAAG
* * ** * *
5834 AAATTGAGAAAAAAAATTTCGGGTCAGTTTTTAGCCAAAATCAAGTAATAATCT-TTACGGTTTT
1 -AATTGAGGAAAAAAATTTCGGGTCAG-TTTTAGCCGAAATCGTGT-ACAA-CTATCACGGTTTT
* * * * * * *
5898 TGGCT-AAGACGTGTTTC-GAGCTCTCGACTCAGTTTTGCATGGTTTTTGACATAAAGACTCCAT
62 TTGCTAAAAACGCGTTTCGGGGC-CTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTT
* *
5961 GAAATATCTATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTT-ATTTTACGAGC
126 GAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGC
* * * * *
6025 ATCTGAATCTTGTTTCGATTTAACTCG----GAATGCGTGAAAAAATGGAAAAACGATATTAAAA
191 ATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCG-GAAAAAATGGAAAAACGATATTAGAA
* * * *
6086 GCGTGAAAAGCCCTTCAAT-TATTTTGGCTTTGAATTATATATTTTTTCTAAGTATTGTGGCTAA
255 GCGTGAAAAACCCGTCAATCT-TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AA
6150 A-
318 AG
* * * *
6151 AATTGAGG-AAAAAATTTCCGGGTCAGTTTTTG-C-AAAT-TTTTAGCCGAA-TACGTGACGGTT
1 AATTGAGGAAAAAAATTT-CGGGTCAGTTTTAGCCGAAATCGTGTA--C-AACTA--TCACGGTT
* * * * ** *** *
6211 TTTGGCTAAAAACGCGTTACGGAGCGC-CGGCTCAACTTTGCATGATTTTTGGTGCAAAGAGTCC
60 TTTTGCTAAAAACGCGTTTCGGGGC-CTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCC
* * * * **
6275 TTGAAATATCTATATTCATCGAACAAAATCTAAACCACATTGGACATAAGGATTTGTTTTTATGA
124 TTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTG-TTTT-T--
* *
6340 GCATCTGAGCATTTGAATCTTGTTTCGATTTAATTAAAAATTAATTCGG-AAAAAT--------G
185 --A-C-GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACG
* * * **
6396 ATATTAGAAGCGTGAAAATCCCGTCAATCTTTATGGCGTCGAATTATATATTTTTTGAGAGTATT
246 ATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATT
6461 GTGGCAAA-
311 GTGGCAAAG
* * * * *
6469 AAGTTGA-GAAAAACATTTTCGGGTCAGTTTTTAGCCGAAATCATGTACTACCCATCACAGTTTT
1 AA-TTGAGGAAAAA-AATTTCGGGTCAG-TTTTAGCCGAAATCGTGTAC-AACTATCAC-G-GTT
* * * * * * *
6533 TTTTGCTAAAAATGTGTTTCGGGGGCTCGACTCAGATTTGCATGGTTTTGGGCATAAAAACTCCT
60 TTTTGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCT
* * * * *
6598 TGAAATATCTATATTCATCGAACCAAATCTCAGCCATATTCGATATAAAGATTTGTTTTTACGAG
125 TGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAG
*
6663 CATCTGAATCTTGTTTTC-ATTGT-ATTAGAAATTAATTCGGAAAAAATGGAAAAAAGATATTAG
190 CATCTGAATCTTG-TTTCGATT-TAATTAGAAATTAATTCGGAAAAAATGGAAAAACGATATTAG
* * * * * *
6726 AAGCGTGAAAATCCAGTCAATCTTTTTGGCGTTTAATGATATATTTTTTCTGAGTCTAT-TGACA
253 AAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTAT-TGTGGCA
*
6790 AAA
317 AAG
** * * **
6793 AATTGAGGAAAAACTTTTCGGGTCAGTTTTTG-CAAAATTTTAGT-CGAAATCCTTTACTCATGA
1 AATTGAGGAAAAAAATTTCGGGTCAGTTTTAGCCGAAATCGT-GTAC--AA--C--TA-TC---A
* * * * * * * *
6856 CGGTTTTTGGCAAAAAAACGCGTTTCGTGGCCCCGGCTCATTTTTGCATGATTTTTGGTATAAAA
55 CGGTTTTTTGC-TAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAG
* * ** **
6921 ATTTCTTGAAATATCTATATTCATCTAACCAAATC-CTAGCCACATTCAATTTAACAATTTGTTT
119 ACTCCTTGAAATATCTATATTCATCTAACCAAATCTC-AGCCACATTGGATTTAAGGATTTGTTT
* * * * * * *
6985 TTACGAGCATCTGAATCTTGTTCCAATTCAATTAGAGATTAATTC-AAAAAAATGTAAAATCGAT
183 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGAT
* * * * *
7049 ATTAGAAGCGTGAAAAA-CCTTCAATATTCTTGGAGTTGAATTATATATTTTTTATGAGTATTGT
248 ATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
*
7113 AGC-AAG
313 GGCAAAG
* * *
7119 AAATTGA-GAAAAAAATTTCGAGTCAGTTTTTAGCCGAAAACGTGTACTAAC-ATTTACGG-TTT
1 -AATTGAGGAAAAAAATTTCGGGTCAG-TTTTAGCCGAAATCGTGTAC-AACTA-TCACGGTTTT
* * * * *
7181 TTGAGTAAAAACGCGTTTCGAGGCCTCGACTCAGTTTTGCATGGTTTTGGGCATAAAAACTCCTT
62 TTG-CTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTT
* * * * *
7246 GAAATATTTATATTCATCTAACTAAATCTCAGTCACATTGGAATGAAGGATTTG----TACGAGC
126 GAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGC
*
7307 ATCTCTGAATCTTGCTTCGATTTAATTAGAAATTAATTCGGAAAAAAAATGGAAAAACGATATTA
191 A--TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG--AAAAAATGGAAAAACGATATTA
* * * * * *
7372 GAAGCGTGAAAAACCCTTCAATTTTTTTTGGAGTTGAATTATATATATATTTTTTAAGTATTATG
252 GAAGCGTGAAAAACCCGTCAA-TCTTTTTGGCGTTGAATTATATAT-T-TTTTCTGAGTATTGTG
*
7437 GCAAAA
314 GCAAAG
* * *
7443 AATTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCTTGTAC-ACCATCA
1 AATTGAGGAAAAAAATTTCGGGTCA------G-----TTTTAGCCGAAATCGTGTACAACTATCA
* * * * * * *
7507 C-GATTTTTGCATAAAAATGCGTTCCGGAGCC-CAGACTCAATCTTGCATGATTTTTGGCGTAAA
55 CGGTTTTTTGC-TAAAAACGCGTTTCGGGGCCTC-GACTCAGTTTTGCATGATTTTTGGCATAAA
* * * ** ** * * * *
7570 GACTCTTTAAAATATTTATATTTGTGGAACCAAATTTCAGCCACATCGGATATAATGATTTGTTT
118 GACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTT
7635 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAATGGAAAAACGAT
183 TTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGAT
* * * **
7699 ATTAGAAGCGTGAAAATCCCGCCAATATTTTTGGCGTTGAATTATATATTTTCACTGAGTATTGT
248 ATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGT
* *
7764 GTCAAAAAA
313 GGC--AAAG
7773 AATTGA-GAAAAAAACTTTTCGGGTCAGTTTTTAGCCGAAATCGTGT---AC-A-CA--------
1 AATTGAGGAAAAAAA--TTTCGGGTCAG-TTTTAGCCGAAATCGTGTACAACTATCACGGTTTTT
** * * * * ****
7824 ----AAAAACGCGTCCCGGTGCCACGATTCTGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGA
63 TGCTAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGA
* * * * * * *
7885 TATATCT-TATTCATCTAATCATATCTCAACTACATTGGATTTAAGGATTTGTTTTTACGTGCAG
128 AATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
* * * * * *
7949 CTTAATCTTGTTTCGATTTAATTAGAAATTGATTAAGAAAAAAAAT-GAAAAATGATATTAAAAG
193 CTGAATCTTGTTTCGATTTAATTAGAAATTAATT-CG-GAAAAAATGGAAAAACGATATTAGAAG
* **
8013 CGTGGAAAGTCC-TCCAATCTTTTTGGCGTTGAATTATAT
256 CGTGAAAAACCCGT-CAATCTTTTTGGCGTTGAATTATAT
8052 TTTATGATTA
Statistics
Matches: 4539, Mismatches: 889, Indels: 636
0.75 0.15 0.10
Matches are distributed among these distances:
294 7 0.00
295 45 0.01
297 5 0.00
298 1 0.00
299 2 0.00
300 2 0.00
302 26 0.01
303 75 0.02
304 151 0.03
305 53 0.01
306 50 0.01
307 6 0.00
309 2 0.00
311 1 0.00
312 23 0.01
313 144 0.03
314 206 0.05
315 231 0.05
316 244 0.05
317 56 0.01
318 285 0.06
319 425 0.09
320 273 0.06
321 562 0.12
322 316 0.07
323 314 0.07
324 92 0.02
325 33 0.01
326 66 0.01
327 76 0.02
328 84 0.02
329 164 0.04
330 50 0.01
331 61 0.01
332 108 0.02
333 12 0.00
334 62 0.01
335 18 0.00
336 27 0.01
337 9 0.00
338 8 0.00
339 3 0.00
340 7 0.00
341 10 0.00
342 12 0.00
343 16 0.00
344 17 0.00
345 6 0.00
346 7 0.00
347 78 0.02
348 1 0.00
349 7 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (319 bp):
AATTGAGGAAAAAAATTTCGGGTCAGTTTTAGCCGAAATCGTGTACAACTATCACGGTTTTTTGC
TAAAAACGCGTTTCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGCATAAAGACTCCTTGAAAT
ATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTG
AATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAATGGAAAAACGATATTAGAAGCGTGA
AAAACCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAG
Found at i:8286 original size:13 final size:13
Alignment explanation
Indices: 8268--8294 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8258 ATTTAATTAG
8268 AAATTAATTCAAA
1 AAATTAATTCAAA
8281 AAATTAATTCAAA
1 AAATTAATTCAAA
8294 A
1 A
8295 TTTTGATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATTAATTCAAA
Found at i:10775 original size:41 final size:41
Alignment explanation
Indices: 10728--10810 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
10718 TCTCTATCCC
10728 AAATTAACTGATTATTTTTTGGATGAATGTGGCCCTATTTA
1 AAATTAACTGATTATTTTTTGGATGAATGTGGCCCTATTTA
10769 AAATTAACTGATTATTTTTTGGATGAATGTGGCCCTATTTA
1 AAATTAACTGATTATTTTTTGGATGAATGTGGCCCTATTTA
10810 A
1 A
10811 GATAGACATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (41 bp):
AAATTAACTGATTATTTTTTGGATGAATGTGGCCCTATTTA
Found at i:11338 original size:2 final size:2
Alignment explanation
Indices: 11331--11355 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11321 AAAATGGGTG
11331 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11356 TATTATACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13460 original size:12 final size:12
Alignment explanation
Indices: 13443--13473 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
13433 TTGGAAATCA
13443 AAGAAAATTATT
1 AAGAAAATTATT
*
13455 AAGAAAATTGTT
1 AAGAAAATTATT
13467 AAGAAAA
1 AAGAAAA
13474 ATACTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (12 bp):
AAGAAAATTATT
Found at i:21554 original size:73 final size:73
Alignment explanation
Indices: 21411--21556 Score: 220
Period size: 73 Copynumber: 2.0 Consensus size: 73
21401 AGTAATTCCG
* * * *
21411 TCATTGCAAATACCAGAATGGGTCTGGGAGAGTTCGACTTTAGATTAATCAGAATTTAAAGTGAT
1 TCATTGCAAACACCAGAATGGGTCTGGGAGAGTTCGACTTTAAATTAATCAGAATTTAAAATAAT
*
21476 CGTCAAAT
66 AGTCAAAT
** *
21484 TCATTGCAAACATGAGAATGGGTTTGGGAGAGTTCGACTTTAAATTAATCAGAATTTAAAATAAT
1 TCATTGCAAACACCAGAATGGGTCTGGGAGAGTTCGACTTTAAATTAATCAGAATTTAAAATAAT
21549 AGTCAAAT
66 AGTCAAAT
21557 CTAGGGGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (73 bp):
TCATTGCAAACACCAGAATGGGTCTGGGAGAGTTCGACTTTAAATTAATCAGAATTTAAAATAAT
AGTCAAAT
Found at i:25122 original size:1 final size:1
Alignment explanation
Indices: 25116--25159 Score: 70
Period size: 1 Copynumber: 44.0 Consensus size: 1
25106 ACATGAAAGG
**
25116 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
25160 GGTTTCTTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95
Consensus pattern (1 bp):
T
Done.