Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016446.1 Corchorus olitorius cultivar O-4 contig16479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 118860
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:460 original size:1 final size:1
Alignment explanation
Indices: 454--502 Score: 98
Period size: 1 Copynumber: 49.0 Consensus size: 1
444 TTATTAAAGG
454 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
503 GTTCTTAACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4312 original size:148 final size:148
Alignment explanation
Indices: 4044--4343 Score: 584
Period size: 148 Copynumber: 2.0 Consensus size: 148
4034 TGTTTTCCAT
4044 TAATTTGTGAATTTTCAAGGATTGAAACTTTTTTGTATTGGTTCTTCTTGTTGGCTTTCTTCTCA
1 TAATTTGTGAATTTTCAAGGATTGAAACTTTTTTGTATTGGTTCTTCTTGTTGGCTTTCTTCTCA
*
4109 TTCTTATAATCTGCATATTATATGTAGAAACTGTAAGAGTTGTATGCTTTTGACTCTTAAGTCAT
66 TTCTTATAATCTGCATATTATATGTAGAAACTGTAAGAGTCGTATGCTTTTGACTCTTAAGTCAT
4174 GGCAAGTGGATTGAAATA
131 GGCAAGTGGATTGAAATA
4192 TAATTTGTGAATTTTCAAGGATTGAAACTTTTTTGTATTGGTTCTTCTTGTTGGCTTTCTTCTCA
1 TAATTTGTGAATTTTCAAGGATTGAAACTTTTTTGTATTGGTTCTTCTTGTTGGCTTTCTTCTCA
4257 TTCTTATAATCTGCATATTATATGTAGAAACTGTAAGAGTCGTATGCTTTTGACTCTTAAGTCAT
66 TTCTTATAATCTGCATATTATATGTAGAAACTGTAAGAGTCGTATGCTTTTGACTCTTAAGTCAT
4322 GGCAAGTGGATTGAAATA
131 GGCAAGTGGATTGAAATA
4340 -AATT
1 TAATT
4344 GGGCTTCTTT
Statistics
Matches: 151, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
147 4 0.03
148 147 0.97
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (148 bp):
TAATTTGTGAATTTTCAAGGATTGAAACTTTTTTGTATTGGTTCTTCTTGTTGGCTTTCTTCTCA
TTCTTATAATCTGCATATTATATGTAGAAACTGTAAGAGTCGTATGCTTTTGACTCTTAAGTCAT
GGCAAGTGGATTGAAATA
Found at i:5535 original size:96 final size:101
Alignment explanation
Indices: 5304--5540 Score: 306
Period size: 102 Copynumber: 2.4 Consensus size: 101
5294 TTTCCTCGAG
* * * * * *
5304 GAGGAGAAATCCCTTCATTTTCATCTTTATTTCCAGCTTTTTTATCAATCAGCTGCTCCAAACCC
1 GAGGAGGAATCCCTTCATTTTCCTCCTTATCTCCAGCTTTTTTATCAACCAGATGCTCCAAACCC
* ** *
5369 TCAGCCTCCTCCCCTTCTTCATTCCCTTCGGGTCCGG
66 TCAGCCTCCT-CCCTTCATCATTCCCTTCGCCTCCGA
*
5406 GAGGAGGAATCCCTTCCA-TTTCCTCCTTATCTCCAGCTTTTTTATCAACCAGATGCTCCAAAGC
1 GAGGAGGAATCCCTT-CATTTTCCTCCTTATCTCCAGCTTTTTTATCAACCAGATGCTCCAAACC
*
5470 CTCTGCCTCCT-CC-TCATC-TT-CCTTC-CCTCCGA
65 CTCAGCCTCCTCCCTTCATCATTCCCTTCGCCTCCGA
5502 GAGGAGGAATCCCTTCATTTTCCTCCTTATCTCCAGCTT
1 GAGGAGGAATCCCTTCATTTTCCTCCTTATCTCCAGCTT
5541 CTTTCACTGC
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
95 2 0.02
96 40 0.33
97 5 0.04
98 2 0.02
99 4 0.03
100 2 0.02
102 64 0.53
103 2 0.02
ACGTcount: A:0.18, C:0.35, G:0.13, T:0.34
Consensus pattern (101 bp):
GAGGAGGAATCCCTTCATTTTCCTCCTTATCTCCAGCTTTTTTATCAACCAGATGCTCCAAACCC
TCAGCCTCCTCCCTTCATCATTCCCTTCGCCTCCGA
Found at i:6151 original size:479 final size:478
Alignment explanation
Indices: 5249--6620 Score: 2149
Period size: 479 Copynumber: 2.9 Consensus size: 478
5239 AGAAAGTTCA
* * * * * * *
5249 CTTTTTTTTTCTTCCGGCCAGCCTTTTCTTCTTCTTCCTAATTTCTTTCCTCGAGGAGGAGAAAT
1 CTTTTTTTTTCTTCCGGCCAGCCTCTCCCTCTTCTTCCTAGTTCCTTCCCTCAAGGAGGAGAAAT
* * * * *
5314 CCCTTCATTTTCATCTTTATTTCCAGCTTTTTTATCAATCAGCTGCTCCAAACCCTCAGCCTCCT
66 CCCTTCATTTTCATCCTTATCTCCAGCTTTTTTATCAACCAGCTGCTCCAAACCCTCTGCTTCCT
* *
5379 CCCCTTCTTCATTCCCTTCGGGTCCGGGAGGAGGAATCCCTTCCATTTCCTCCTTATCTCCAGCT
131 CCCCTTCTTCATTCCCTCCGGGTCCGGGAGGAGGAATCCTTTCCATTTCCTCCTTATCTCCAGCT
* *
5444 TTTTTATCAACCAGATGCTCCAAAGCCTCTGCCTCCTCCTCATCTTCCTTCCCTCCGAGAGGAGG
196 TTTTTATCAACCAGCTGCTCCAAAGCCTCTGCCTCCT-C-C-TCTTCCTTCCCTCCGGGAGGAGG
* *
5509 AATCCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCACTGCTTGAGCCTTCTTTTTCTCAACCA
258 AATCCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCTCTGCTTGAGCCTTCTCTTTCTCAACCA
5574 GCTGCTCCAAAGCCTCTGCCTCCTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCTCG
323 GCTGCTCCAAAGCCTCTGCCTCCTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCT-G
* *
5639 GAGCTTCTAACTATCTGTACTCCCTTGACTCCCTTGATCTTGCTAAGCATTCTAGGGAAAGGCAT
387 GAGCTTCTAACTATCTGTACTCCCTTAACTCCCTTGATCTTGCTAAGCATTCTAGGGAAAGACAT
5704 TTTTTTTCTTTTGAAATTTTTA-CCCC
452 TTTTTTTCTTTTGAAATTTTTACCCCC
5730 CTTTTTTTTTCCTTCCGGCCAGCCTCTCCCTCTTCTTCCTAGTTCCTTCCCTCAAGGAGGAGAAA
1 CTTTTTTTTT-CTTCCGGCCAGCCTCTCCCTCTTCTTCCTAGTTCCTTCCCTCAAGGAGGAGAAA
*
5795 TCCCTTCATTTTCATCCTTATCTCTAGCTTTTTTATCAACCAGCTGCTCCAAACCCTCTGCTTCC
65 TCCCTTCATTTTCATCCTTATCTCCAGCTTTTTTATCAACCAGCTGCTCCAAACCCTCTGCTTCC
* * *
5860 TCCTCTTCTTCTTTCTCTCCGGGTCCGGGAGGAGGAATCCTTTCCATTTCCTCCTTATCTCCAGC
130 TCCCCTTCTTCATTCCCTCCGGGTCCGGGAGGAGGAATCCTTTCCATTTCCTCCTTATCTCCAGC
5925 TTTTTTATCAACCAGCTGCTCCAAAGCCTCTGCCTCCTCCTCTTCCTTCCCTCCGGGAGGAGGAA
195 TTTTTTATCAACCAGCTGCTCCAAAGCCTCTGCCTCCTCCTCTTCCTTCCCTCCGGGAGGAGGAA
*
5990 TCCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCTCTGCTTGAGCCATCTCTTTCTCAACCAGC
260 TCCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCTCTGCTTGAGCCTTCTCTTTCTCAACCAGC
* *
6055 TACTCCAAAGCCTCTGCCTCTTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCTAGGA
325 TGCTCCAAAGCCTCTGCCTCCTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCT-GGA
* *
6120 GCTTCTAACTATCTGTACTCCCTTTACTCCCTTGATCTTGCTAAGCATTCTAGGGAGAGACATTT
389 GCTTCTAACTATCTGTACTCCCTTAACTCCCTTGATCTTGCTAAGCATTCTAGGGAAAGACATTT
6185 TTTTTCTTTTGAAATTTTTACCCCC
454 TTTTTCTTTTGAAATTTTTACCCCC
* *
6210 CTTTTATTTTTCTTTCGACCAGCCTCTCCCTCTTCTTCCTAGTTCCTTCCCTCAAGGAGGAGAAA
1 CTTTT-TTTTTCTTCCGGCCAGCCTCTCCCTCTTCTTCCTAGTTCCTTCCCTCAAGGAGGAGAAA
* *
6275 TCTCTTCATTTTCATCCTTATCTCCAGCTTTTTTATCAACCAGCTGCTTCAAACCCTCTGCTTCC
65 TCCCTTCATTTTCATCCTTATCTCCAGCTTTTTTATCAACCAGCTGCTCCAAACCCTCTGCTTCC
*
6340 TCCCCTTCTTCCTTCCCTCCGGGTCCGGGAGGAGGAATCCTTTCCATTTCCTCCTTATCTCCAG-
130 TCCCCTTCTTCATTCCCTCCGGGTCCGGGAGGAGGAATCCTTTCCATTTCCTCCTTATCTCCAGC
** *
6404 ------------CAGC--CT---TTG-C-CT-CCTCCTCCTCTTCCTTCCCTCCAGGAGGAGGAA
195 TTTTTTATCAACCAGCTGCTCCAAAGCCTCTGCCTCCTCCTCTTCCTTCCCTCCGGGAGGAGGAA
*
6449 TCCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCTCTGTTTGAGCCTTCTCTTTCTCAACCAGC
260 TCCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCTCTGCTTGAGCCTTCTCTTTCTCAACCAGC
*
6514 TGCTCCAAAACCTCTGCCTCCTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCTGAGA
325 TGCTCCAAAGCCTCTGCCTCCTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCTG-GA
* *
6579 GCTTCTAACTATCTGTACTCCCATAACCCCCTTGATCTTGCT
389 GCTTCTAACTATCTGTACTCCCTTAACTCCCTTGATCTTGCT
6621 GTAATAACAG
Statistics
Matches: 839, Mismatches: 48, Indels: 30
0.91 0.05 0.03
Matches are distributed among these distances:
458 1 0.00
459 194 0.23
460 2 0.00
461 1 0.00
462 1 0.00
465 2 0.00
467 4 0.00
479 230 0.27
480 185 0.22
481 16 0.02
482 203 0.24
ACGTcount: A:0.16, C:0.33, G:0.13, T:0.38
Consensus pattern (478 bp):
CTTTTTTTTTCTTCCGGCCAGCCTCTCCCTCTTCTTCCTAGTTCCTTCCCTCAAGGAGGAGAAAT
CCCTTCATTTTCATCCTTATCTCCAGCTTTTTTATCAACCAGCTGCTCCAAACCCTCTGCTTCCT
CCCCTTCTTCATTCCCTCCGGGTCCGGGAGGAGGAATCCTTTCCATTTCCTCCTTATCTCCAGCT
TTTTTATCAACCAGCTGCTCCAAAGCCTCTGCCTCCTCCTCTTCCTTCCCTCCGGGAGGAGGAAT
CCCTTCATTTTCCTCCTTATCTCCAGCTTCTTTCTCTGCTTGAGCCTTCTCTTTCTCAACCAGCT
GCTCCAAAGCCTCTGCCTCCTTCTCATTTACGATTATGAGGGCATTTCCTTTTAGCATCTGGAGC
TTCTAACTATCTGTACTCCCTTAACTCCCTTGATCTTGCTAAGCATTCTAGGGAAAGACATTTTT
TTTCTTTTGAAATTTTTACCCCC
Found at i:16763 original size:18 final size:17
Alignment explanation
Indices: 16737--16770 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
16727 TGCCAAAATT
16737 AAAAAGAAAAAGAAACA
1 AAAAAGAAAAAGAAACA
16754 AAAAAGGAAAAAGAAAC
1 AAAAA-GAAAAAGAAAC
16771 TTCTATTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.79, C:0.06, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAGAAACA
Found at i:16966 original size:17 final size:17
Alignment explanation
Indices: 16944--16981 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
16934 AATCATATAG
16944 TAATAATAAATAC-TAAA
1 TAATAAT-AATACGTAAA
*
16961 TAATAATACTACGTAAA
1 TAATAATAATACGTAAA
16978 TAAT
1 TAAT
16982 TTTTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATAATAATACGTAAA
Found at i:22207 original size:16 final size:16
Alignment explanation
Indices: 22156--22207 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
22146 CGTTTGACAT
22156 CGTTTTCGTTTTTC-TG
1 CGTTTT-GTTTTTCTTG
** * *
22172 TTTTTTGTTTTTGTTT
1 CGTTTTGTTTTTCTTG
22188 CGTTTTGTTTTTCTTG
1 CGTTTTGTTTTTCTTG
22204 CGTT
1 CGTT
22208 GTCAATTTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 6 0.22
16 21 0.78
ACGTcount: A:0.00, C:0.12, G:0.17, T:0.71
Consensus pattern (16 bp):
CGTTTTGTTTTTCTTG
Found at i:31907 original size:17 final size:17
Alignment explanation
Indices: 31887--31920 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
31877 CTTTTGAATG
31887 AAGAAAAAAGGAGGTGA
1 AAGAAAAAAGGAGGTGA
* *
31904 AAGAAAAGAGGATGTGA
1 AAGAAAAAAGGAGGTGA
31921 TAGACACAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.35, T:0.09
Consensus pattern (17 bp):
AAGAAAAAAGGAGGTGA
Found at i:38128 original size:5 final size:5
Alignment explanation
Indices: 38112--38141 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
38102 AATGCAACCA
38112 TTTTG CTTTTG TTTTG TTTTG TTTTG TTTT
1 TTTTG -TTTTG TTTTG TTTTG TTTTG TTTT
38142 TGACTTTGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.00, C:0.03, G:0.17, T:0.80
Consensus pattern (5 bp):
TTTTG
Found at i:40693 original size:2 final size:2
Alignment explanation
Indices: 40681--40710 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
40671 ATTTAATTTG
40681 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
40711 GGTTTGAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:44181 original size:17 final size:16
Alignment explanation
Indices: 44127--44177 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
44117 AATCACCCCC
*
44127 AGATCACTGGTGATCTT
1 AGATCACTGGTGATC-A
*
44144 AGATCACTAGTGATGCA
1 AGATCACTGGTGAT-CA
44161 AGATCACTGGTGATCA
1 AGATCACTGGTGATCA
44177 A
1 A
44178 AGATTACATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.10
17 26 0.87
18 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (16 bp):
AGATCACTGGTGATCA
Found at i:51367 original size:22 final size:21
Alignment explanation
Indices: 51339--51384 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 21
51329 TTGAGTAGTA
51339 AATTAGTAATTAATTATTAAC-T
1 AATTAGTAA-TAATT-TTAACAT
51361 AATTAGTAATAATTTTAACAT
1 AATTAGTAATAATTTTAACAT
51382 AAT
1 AAT
51385 AATTGAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.22
21 9 0.39
22 9 0.39
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (21 bp):
AATTAGTAATAATTTTAACAT
Found at i:67209 original size:16 final size:17
Alignment explanation
Indices: 67190--67222 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
67180 TCTCTCTCTA
*
67190 TTTTCCTTTT-TTTTTT
1 TTTTACTTTTCTTTTTT
67206 TTTTACTTTTCTTTTTT
1 TTTTACTTTTCTTTTTT
67223 GGTAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTACTTTTCTTTTTT
Found at i:84967 original size:17 final size:18
Alignment explanation
Indices: 84945--84978 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
84935 AAATTCTCTC
84945 TTTTTTTTT-CTTTTTCA
1 TTTTTTTTTCCTTTTTCA
84962 TTTTTTTTTCCTTTTTC
1 TTTTTTTTTCCTTTTTC
84979 CAGTGTGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTCCTTTTTCA
Found at i:87746 original size:2 final size:2
Alignment explanation
Indices: 87739--87763 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
87729 AATAGGATAG
87739 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
87764 GGTGACACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112639 original size:331 final size:330
Alignment explanation
Indices: 111271--112858 Score: 1911
Period size: 331 Copynumber: 4.9 Consensus size: 330
111261 AGTATATATT
* * * *
111271 TTTTTGGCTAAAAACGCGTTTCGGGGCCCGGCTCAGTTTTGCATGATTTTTGGTGTCAAGATTCC
1 TTTTTGGCTAAAAACGTGTTTCGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
* * *
111336 TTGAGATATCTATATTCATCTAACCAAATCTGTGCAACATTGGATTTAAAGATTTGTTTTTACGA
66 TTGAAATATCTATATTCATCTAACCAACTCTGTGCAACATTGGATTTAAGGATTTGTTTTTACGA
* * * **
111401 GTATCTGGATCTAGTTTCGATTTTATTATAAAATAATTTGGAAAAATAAGAAAAATGATATTAGA
131 GTATCTGAATCTTGTTTCGATTTTATTAGAAAATAATTCAGAAAAATAAGAAAAATGATATTAGA
* * *
111466 AGAGTGAAAAGCCCTCAAATCTTTTTGGCGTTT-AATCATATATTTTTTTATGAGTATTTTGGAT
196 AGCGTGAAAAGCCCTCAAATCTTTTTGGCGTTTAAAT-ATATA-ATTTTTATGAGTATTTTGGCT
* *
111530 AAAAATTGAGGTAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGATGTACTAA--
259 AAAAATTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACC
*
111593 A-AAC--
324 ATCACGG
* * **
111597 ------GC-----A--T-TTT-GTGGCCCCGGCTCAGTTTTGCATGGTTTTTGCTGGGAAGACTC
1 TTTTTGGCTAAAAACGTGTTTCG-GGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
** * *
111647 CTTGAAATATCTATATTCATAAAACCAAATCTGTGCAATATTGGATTTAAGGATTTGTTTTTACG
65 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAACATTGGATTTAAGGATTTGTTTTTACG
* * * * * *
111712 AGCATCTAAATCTTGCTTCGATTTTATTAGAAAACAATTCAAAAAAATGAGAAAAATGATATTAG
130 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATAATTCAGAAAAATAAGAAAAATGATATTAG
* * * *
111777 AAACGTGAAAAGCCCTCAAATCTTTTTGTCTTTTAATTATAT-ATTGTTTATGAGTATTTTGGCT
195 AAGCGTGAAAAGCCCTCAAATCTTTTTGGCGTTTAAATATATAATT-TTTATGAGTATTTTGGCT
111841 AAAAATTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTG---T----
259 AAAAATTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACC
111899 -TCACGG
324 ATCACGG
* ** *
111905 TTTTTGGC-AAAAACGCGTTTCGGGGACCGGCCTCAGTTTTGCATGATTTTTGGTACCAAGACTC
1 TTTTTGGCTAAAAACGTGTTTCGGGCCCCGG-CTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * * * *
111969 CTTGAAATATCTATATTAATCTAGCCAACTCCGTGCAACATTGGATTTAAGGATTTTTTTTTTCG
65 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAACATTGGATTTAAGGATTTGTTTTTACG
* * * *
112034 AGTATCTTAATCTTGTTTCGATTTTATTAGAAAATATTTCA-AAAAATAAGAAAAATAATATTAA
130 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATAATTCAGAAAAATAAGAAAAATGATATTAG
* * * *
112098 AAGCGTGAAAAGCACTCAAATATTTTTGTCGTTTAAATATAT-ATTTTTATGAGTATTTTAGCTA
195 AAGCGTGAAAAGCCCTCAAATCTTTTTGGCGTTTAAATATATAATTTTTATGAGTATTTTGGCTA
* * * *
112162 AAAATT-AAGAAAAATATTTGGGATCAATTTTTGCGAAATTTTAGCCGAAATAGTGCACT-ACCA
260 AAAATTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACCA
112225 TCACGG
325 TCACGG
* * * * * *
112231 TTTTTGGCTAAAAACGCGTTTAGGAGACCCGGCTCATTTTTGCATGATTTTTGGTGCCAGGAATC
1 TTTTTGGCTAAAAACGTGTTTCGG-GCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * *
112296 CTCGAAATATCTATATTCATCTAACCAAATCTGTGCAACATTGGATTTAAGGATTTGTTCTTACG
65 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAACATTGGATTTAAGGATTTGTTTTTACG
* * * *
112361 AGTATCTGAATCTAGTTTCGATTTTA-TATGAAAACAATTCCGAATAATAAGAAAAATGATATTA
130 AGTATCTGAATCTTGTTTCGATTTTATTA-GAAAATAATTCAGAAAAATAAGAAAAATGATATTA
* * * * * * * * *
112425 CAAACGTGAAAATCCCTCAAATCTTTTTGTCTTTTAATTATATAATTTTAATAAGTATTTTGCCT
194 GAAGCGTGAAAAGCCCTCAAATCTTTTTGGCGTTTAAATATATAATTTTTATGAGTATTTTGGCT
* * *
112490 AAAAATTGAGGAAAAATTTTTGGGGGTCAATTTTTCCGAAATTTTAGCCGAAATGGTGTATTAAC
259 AAAAATTGAGGAAAAATATTT-GGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAAC
112555 CATCACGG
323 CATCACGG
* * * * * *
112563 TTTTTGGCTAAATACGTGTTTCGGGCCCCGACTTAGTTTTGCATGATTTTTTGTGTCAAGACTGC
1 TTTTTGGCTAAAAACGTGTTTCGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
* * * *
112628 TTGAAATATCTATATTCATCAAACCAACTCTGTACAACATTGGATTTAAGGATTTGTTTTCACAA
66 TTGAAATATCTATATTCATCTAACCAACTCTGTGCAACATTGGATTTAAGGATTTGTTTTTACGA
* ** *
112693 GTATCTAAATCTTGTTTATATTTTATTAGAAAATATTTCA-AAAGAATAAGAAAAATGATATTAG
131 GTATCTGAATCTTGTTTCGATTTTATTAGAAAATAATTCAGAAA-AATAAGAAAAATGATATTAG
* * * *
112757 AAGCGTGAAAAACACTCAAA-CATTTTTGGCATTTAAATATATATTTTTTATGAGTATTTTGGCT
195 AAGCGTGAAAAGCCCTCAAATC-TTTTTGGCGTTTAAATATATAATTTTTATGAGTATTTTGGCT
*
112821 AAAAATTGAGGAAAAATATTTGGGGTCAAATTTTGCGA
259 AAAAATTGAGGAAAAATATTTGGGGTCAATTTTTGCGA
112859 TCACGTTTTT
Statistics
Matches: 1075, Mismatches: 148, Indels: 74
0.83 0.11 0.06
Matches are distributed among these distances:
306 2 0.00
308 1 0.00
310 2 0.00
311 73 0.07
312 186 0.17
313 2 0.00
314 2 0.00
315 1 0.00
318 1 0.00
319 46 0.04
320 26 0.02
321 69 0.06
322 122 0.11
326 16 0.01
327 133 0.12
328 61 0.06
329 24 0.02
330 29 0.03
331 246 0.23
332 33 0.03
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (330 bp):
TTTTTGGCTAAAAACGTGTTTCGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
TTGAAATATCTATATTCATCTAACCAACTCTGTGCAACATTGGATTTAAGGATTTGTTTTTACGA
GTATCTGAATCTTGTTTCGATTTTATTAGAAAATAATTCAGAAAAATAAGAAAAATGATATTAGA
AGCGTGAAAAGCCCTCAAATCTTTTTGGCGTTTAAATATATAATTTTTATGAGTATTTTGGCTAA
AAATTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACCAT
CACGG
Found at i:113470 original size:331 final size:330
Alignment explanation
Indices: 112866--114935 Score: 2544
Period size: 331 Copynumber: 6.3 Consensus size: 330
112856 CGATCACGTT
** * * * *
112866 TTTTTGGCTAAAAACACGTTTTGGGGCCTCGGCTCAGTTTTGCATGATTTTTGGTGCGAAGACTG
1 TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * * * * *
112931 CTTGAAATATCTATATTCATCAAACCAAATATGTGCAACATTGGATTTAAAGATTTGTTTTTACG
66 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTACG
* * * * *
112996 AGCATCTAAATCTTCTTTCGATTTAATTAGATATAA-AATT-AGAAAAAATTAGAAAAATGATAT
131 AGTATCTGAATCTTGTTTCGATTTTATTAGA-A-AATATTTCAG-AAAAA-TAGAAAAATGATAT
* ** * * * *
113059 CT-GAAGCGTG-AAAGCCCTCCAAT-CTTTTTGGCGTTTATTTGTATATTTATTCTAAGTATTTT
192 -TAGAAGCGTGAAAAGCCCTCAAATAC-TTTTGGCGTTTAAATATATATTTTTTATGAGTATTTT
* * * *
113121 GGCTAAAAATTGAGGAAAAATACTTGGGGTCAATTTTTGCGAAATTTTTGCTGAAATGGTGTACG
255 GGCTAAAATTTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTAC-
* *
113186 TTA-CATCATGG
319 TAACCATCACGG
* * * * * *
113197 TATTTGGCTAAAAACGTGTTTCGGAGCCCTGACTCAATTTTGTATGATTTTTGGTGCCAAGACTC
1 TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
*
113262 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGAGTTAAGGATTTGTTTTTACG
66 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTACG
* * *
113327 AGTTTCTGAATCTTGTTTTGATTTTATTAGAAAATATTTCAGAAAAATAGGAAAAATGATGTTAG
131 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCAGAAAAATA-GAAAAATGATATTAG
* *
113392 AAGCGTGAAAATCCCTCAAATACTTTTGGAGTTTAAATATATATTTTTTATGAGTATTTTGGCTA
195 AAGCGTGAAAAGCCCTCAAATACTTTTGGCGTTTAAATATATATTTTTTATGAGTATTTTGGCTA
* * *
113457 AAATTTGAGGAAAAATATTTGGGGTCAATTTTGGCGAAATTTTAGCCGAAATCGTGTACTAACTA
260 AAATTTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACCA
*
113522 TCAAGG
325 TCACGG
* * *
113528 TTTTTGGTTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGAGTCAAGACTC
1 TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
*
113593 CTTGAAATATCTATATTCATCTAACCAACTCTGAGCAGCGTTGGATTTAAGGATTTGTTTTTACG
66 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTACG
* * * *
113658 AGTATCTGAATCTTGTTTCGATTATATTTGAAAACAGTTCAGAAAAATAAGAAAAATGATATTAG
131 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCAGAAAAAT-AGAAAAATGATATTAG
* *
113723 AAGCGTGAAAAGCCCTCAATCTA-TTTTGGCGTTTAATTATATATTTTTTTATGAGTATTTTGGC
195 AAGCGTGAAAAGCCCTCAA-ATACTTTTGGCGTTTAAATATATA-TTTTTTATGAGTATTTTGGC
* * *
113787 T-AAATATTGAGGACAAATATTTGGGGTCAATTTTTGCGAAATTTTCGCTGAAATGGTGTACTAA
258 TAAAAT-TTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAA
*
113851 CCATCATGG
322 CCATCACGG
* * * * * *
113860 TATTTGGCTAAAAACGCGTTTCGGAGCCCCGACTCAGTTTTGTATGATTTTTGGTGCCAAAACTC
1 TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * *
113925 CGTGAAATATCTATATTCATCTAACCAACTCTGAGCAGCGTTGGATTTAAGGATTTGTTTTTATG
66 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTACG
* * * * *
113990 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCCGAAAAAAACAGAAATGATGTTCA-
131 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCAGAAAAATAGAAAAATGATATT-AG
* * * * *
114054 AAGCGTGAGAATCCCTCAAATATTTTTGGCGTTTAAATATATATTTTTTAAGATTATTTTGGCTA
195 AAGCGTGAAAAGCCCTCAAATACTTTTGGCGTTTAAATATATATTTTTTATGAGTATTTTGGCTA
* * * * * *
114119 AAAATTGAGGAAACATATTTGGGGTCAATTTTTGGGAAATTTTAGCCGAAATGATGTATTAATCA
260 AAATTTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACCA
*
114184 TCACAG
325 TCACGG
* * * *
114190 TTTTTGGCTAAAAACGCGTTTTGGGGGCCTCGGCTCAGTTTTGCATGATTTTTGGTGCCAAAACT
1 TTTTTGGCTAAAAACGTG-TTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACT
* * * *
114255 CCTAGAAATATCTATATTCATATAACCAACTCTGTGCAGCGTGGGATTTAAGAATTTGTTTTTAC
65 CCTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTAC
* * *
114320 GAGTATCTGAATCTTGTTTCGATTTTATTATAAAATATTTCAGAAAAAAATGAAAAATGATGTTA
130 GAGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCAGAAAAATA-GAAAAATGATATTA
* * * * *
114385 GAAGCGTGACAATCCCTCAAATATTTTTGGCGTTTAAATATATACTTTTTATGAGTATTTTCGCT
194 GAAGCGTGAAAAGCCCTCAAATACTTTTGGCGTTTAAATATATATTTTTTATGAGTATTTTGGCT
* * *
114450 AAAAATTT-AGGAATAATATATGGGGTCAATTTTTGCGAAATTTTGGCCGAAATGGTGTACTAAC
259 -AAAATTTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAAC
114514 CATCACGG
323 CATCACGG
* * * ** * * * * * *
114522 TTTTTGGATAAAAACGTATTTCGCGGCCCATGCTTATTTTTTCATTATTTTTGTTGCCAAAACTC
1 TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * * *
114587 CTTGAAATATCTATATTCATCTCACCAAATCTGTGCAACATTGGATTTAAGGATTTG-TTTTACG
66 CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTACG
* * * * * *
114651 AGCATCTAAATCTTCTTTCGATTTAATTAG---ATA--T---AAAATTAGAAAAATGATATTTGA
131 AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCAGAAAAATAGAAAAATGATATTAGA
* * * * * *
114708 AGCGTG-AAAGCCCTC-CATTCTTTTTGGAGTTTAATTGTATATTTTTTTATGATTATTTTGGCT
196 AGCGTGAAAAGCCCTCAAATAC-TTTTGGCGTTTAAATATATA-TTTTTTATGAGTATTTTGGCT
* * * * * *
114771 AAAAGTTGAGGAAAAATATTTGGGATCAATTTTTGTGAAAATTTAGCTGAAATGGTGTACTAATC
259 AAAATTTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACC
114836 ATCACGG
324 ATCACGG
* * * *
114843 TTTTTGGCTAAAAATGTATTTCGGGGCCCCGGCTCATTTTTGCATGATTTTTGGTGCCAAGAGTC
1 TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
*
114908 CTTCAAATATCTATATTCATCTAACCAA
66 CTTGAAATATCTATATTCATCTAACCAA
114936 ATCATGCAAA
Statistics
Matches: 1512, Mismatches: 206, Indels: 52
0.85 0.12 0.03
Matches are distributed among these distances:
319 2 0.00
320 30 0.02
321 174 0.12
322 5 0.00
325 1 0.00
327 3 0.00
329 5 0.00
330 157 0.10
331 742 0.49
332 387 0.26
333 6 0.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (330 bp):
TTTTTGGCTAAAAACGTGTTTCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
CTTGAAATATCTATATTCATCTAACCAACTCTGTGCAGCGTTGGATTTAAGGATTTGTTTTTACG
AGTATCTGAATCTTGTTTCGATTTTATTAGAAAATATTTCAGAAAAATAGAAAAATGATATTAGA
AGCGTGAAAAGCCCTCAAATACTTTTGGCGTTTAAATATATATTTTTTATGAGTATTTTGGCTAA
AATTTGAGGAAAAATATTTGGGGTCAATTTTTGCGAAATTTTAGCCGAAATGGTGTACTAACCAT
CACGG
Found at i:116133 original size:331 final size:331
Alignment explanation
Indices: 114970--118621 Score: 5190
Period size: 331 Copynumber: 11.0 Consensus size: 331
114960 TAATTGAGGA
* * *
114970 AAAATTTTGCAAAAATTGACCCCAAATATTTTTCCTCAAATTTT-AGACAAAATACTCATAAAAA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTC-AATTTTAAGCCAAAATACTCATAAAAT
* * *
115034 ATATATATTTAAACACCAAAAATATTTGTGGTATTTTCACGCTTCTAACATCATTTTTCTTATTT
65 ATATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTT
* * *
115099 TTCTGAAATATTTTATAATAAAATCGAAACAAGATTCAGAAACTCGTAAAAACAAATCCTT-AAT
130 TTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAAT
* * * * *
115163 CCAACGCTGCATAGAGTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCA
195 CCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCA
* * * * *
115228 TGCAAAACTGAGTCGGGGCTCCGAAACGCGTTTTTAACCAAATACCATGATGGTTA-T---TGCA
260 TGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACAT-CA
*
115289 TTTCAGCT
324 TTTCGGCT
* * * *
115297 AAAATTTCGCAAAAATTAACCCCAAATATTTTTCATCAATTTTCAGCCAAAATACTCA-AAAAAA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
* * * * * * * * * * *
115361 TAAACAATTAAACACCAAACAGATTGGAGGG-CTTTCACGCTTCAAATATCATTTTTCTAATTTT
66 TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTA-TTT
* * * * * * * *
115425 TTCT--AATTTTATATCTAATTAAATCTAAACGAGATTTAGATGCTCGTAAAAGCAAATCCTTAA
130 TTCTGAAATATT-T-TCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAA
* * *
115488 ATCCAATGTTGCACATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAAT
193 ATCCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAAT
* * ** * * * * * *
115553 CATGCAAAAATAAGCCGGGGCCCCGAAATACGTTTTTGGCCAAAACCCGTGAAGATTAGTATACC
258 CATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATC
*
115618 ATTTCAGCT
323 ATTTCGGCT
* * * * * *
115627 AAAATATCGCAAAAAATAGACCCCAAATATTTTTCCTCAATTTTCAGCGAAAATACTCAAAAAAA
1 AAAATTTCGC-AAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAAT
* * * * * * * *
115692 ATATATAATCAAAAGGCAAAAAGATTTGAGGGCTTTTCACGCTTCTAATATCATTTTTCTTAATT
65 ATATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTT
*
115757 TTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAAAT
130 TTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAAT
* * *
115822 CCAATGTTACACAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCA
195 CCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCA
* * * *
115887 TGCAAAACTGAGCCGGGGCTCCGAAACGCGTTTTTAACCAAATACCATGATGGTTAGTACATCAT
260 TGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCAT
115952 TTCGGCT
325 TTCGGCT
115959 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
*
116024 TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCATGCTTCTAACATCATTTTTCTTATTTT
66 TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTTT
*
116089 TCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACATATTCTTAAATC
131 TCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAATC
* *
116154 CAACGCTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCAA
196 CAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCAT
* ** *
116219 GCAAAACTGAGCCGAGGCCCCGAAACGCGTTTTTAGATAAAAACCGTGATGG-TAGTACATCGTT
261 GCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCATT
116283 TCGGCT
326 TCGGCT
* *
116289 -AGA--TCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAGAATACTCATAAAAAT
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCAT-AAAAT
116351 ATATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTC-TATTT
65 ATATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTT
116415 TTCTGAAATATTTTCTAAT-AAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAAT
130 TTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAAT
* * *
116479 CCAACGTTGCACAGAGTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTGGCACCAAAAATCA
195 CCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCA
* * * * *
116544 TGCAAAACTGAGCCGAGGCCCTGAAACGCGTGTTTAGCCAATAACCGTGATGGATAGTACATCAT
260 TGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCAT
116609 TTCGGCT
325 TTCGGCT
* *
116616 AAAATTTCACTAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCAATATATA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTC-ATA-A-A
116681 TATATATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTA
63 -ATATATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTA
* * *
116746 TTTTTCTAAAATATTTTCTAAT-AAATCTAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTA
127 TTTTTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTA
* * * **
116810 AATACAACGTTGCACAGATTTGGTTAGATTAATATAGTTATTTCAAGGACTCTTTTCACCAAAAA
192 AATCCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAA
* * * *
116875 TCATGCAAAAATGAGCCGGGGCTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGATTAGCACAT
257 TCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACAT
116940 CATTTCGGCT
322 CATTTCGGCT
*
116950 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTTAGCCAAAATACTCATATATAT
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATA-A-A-
*
117015 ATATATATACATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTTTAACATCATTTTTCTT
63 ATATATAT--ATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTT
* *
117080 ATTTTTCTGAAATATTTTCTAATAAAATCGAAACAAGATTTA-AGTCCTCGTAAAAACAAATTCT
126 ATTTTTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGA-TACTCGTAAAAACAAATTCT
* * * * *
117144 TAAATGCAAGGCTGCACAGATTTGGTTAGATGAATATAGATATTTCGAGGACTTTTGGCACCAAA
190 TAAATCCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAA
* * ** * *
117209 AATCATGCAAAAATGAGCCTGGGCCCCGAAATACGTTTTTAGCCAAAAAACTGTGATGATTAGTA
255 AATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTA
* *
117274 CACCATTTCAGCT
319 CATCATTTCGGCT
* * *
117287 AAAATTTCGCAAAAATTGACCCCAAGTATTTTTCCTCAATTTTCAGCAAAAATACTCATAAAA-A
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
* ** * * *
117351 TAATATAATTAAAATCCAAAAAGATTTGAGGGCTTTTCACGCTTCTAAAATCATTTTTCTTATTT
66 T-ATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTT
* *
117416 TTCTGAAATATTTTCTAATCAAATCGAAACAAGATACAGATACTCGTAAAAACAAATTCTTAAAT
130 TTCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAAT
* *
117481 CCAATGTTGCACAGATTTGGTTAAATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCA
195 CCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCA
* ** * *** * * * *
117546 TGCAAAAATGAGCAAGGGACCCGAAATATGTTTTTAGCTAAAAACCGTGATGATTAGTTCACCAT
260 TGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCAT
*
117611 TTCAGCT
325 TTCGGCT
*
117618 AAAATTTCGCAAACATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
* *
117683 TATATATTTAAACGCCCAAAATATTTGAGGGATTTTCACACTTCTAACATCATTTTTCTTATTTT
66 TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTTT
117748 TCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAATC
131 TCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAATC
* * * *
117813 CAACGCTGCACAGATTTGCTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAACCAA
196 CAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCAT
* * *
117878 GCAAAATTGAGCCGAGGCCCCGAAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACATCATT
261 GCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCATT
117943 TCGGCT
326 TCGGCT
* * *
117949 AGAATTTCGCAAAAATTAACCCCAAATATTTTTCCTCAATTTTAAGACAAAATACTCATAAAATA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
*
118014 TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTACTTT
66 TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTTT
118079 TCTGAAATATTTTCTAAT-AAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAATC
131 TCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAATC
* * * * * *
118143 CAACGTTGCACAGAGTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTGCCACCAAAAGTCTT
196 CAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCAT
* * * * *
118208 GCAAAACTTAGCCGAGGCCCCGAAACGCGTTTTTAGCCAAAAGCTGTGATGGATAGTACATCATT
261 GCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCATT
118273 TCGGCT
326 TCGGCT
* * *
118279 AAAATTTTGTAAAAATTGACCCCAAATATTTTTCCTCAATTTTTAGCCAAAATA-TCATAAAATA
1 AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
* * *
118343 TATATACATTTAAGCGCCAAAAATATTTGACGGATTTTCACGCTTTTAACATCATTTTTCTTATT
66 TATAT--ATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATT
* *
118408 TTTCT-AATATATTTTCTAATAAAATCGAAACAACATTCAGATACTCGTAAAAACAAAATCTTAA
129 TTTCTGAA-ATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAA
* * * * *
118472 GTCCAATGGTGCGCAGATTTGGTTAGATGAATATAGATATTTCAAGAACTCTTGGCACCAAAAAT
193 ATCCAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAAT
* ** *
118537 CAAGCAAAACTGAGCCAAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATT
258 CATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATC
118602 A-TTCGGCT
323 ATTTCGGCT
118610 AAAATTTCGCAA
1 AAAATTTCGCAA
118622 GGCTCCGAAA
Statistics
Matches: 2993, Mismatches: 296, Indels: 68
0.89 0.09 0.02
Matches are distributed among these distances:
324 5 0.00
325 26 0.01
326 234 0.08
327 245 0.08
328 66 0.02
329 17 0.01
330 301 0.10
331 875 0.29
332 571 0.19
333 107 0.04
334 250 0.08
335 78 0.03
336 132 0.04
337 86 0.03
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (331 bp):
AAAATTTCGCAAAAATTGACCCCAAATATTTTTCCTCAATTTTAAGCCAAAATACTCATAAAATA
TATATATTTAAACGCCAAAAATATTTGAGGGATTTTCACGCTTCTAACATCATTTTTCTTATTTT
TCTGAAATATTTTCTAATAAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATTCTTAAATC
CAACGTTGCACAGATTTGGTTAGATGAATATAGATATTTCAAGGACTCTTGGCACCAAAAATCAT
GCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACATCATT
TCGGCT
Done.