Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016447.1 Corchorus olitorius cultivar O-4 contig16480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83711

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--826
330
2.5
329
92
2
1324
38
16
12
33
1.86
5398--5489
45
2.0
45
100
0
184
47
28
4
19
1.68
7975--8016
18
2.3
18
87
0
57
19
0
7
73
1.05
10868--10906
15
2.6
15
87
0
51
0
15
5
79
0.90
14094--14291
22
8.9
22
77
10
179
35
9
18
37
1.82
14091--15352
66
19.3
65
67
18
303
37
9
16
35
1.82
14328--14768
22
19.9
22
70
13
181
39
9
16
34
1.81
14328--15352
44
23.9
42
66
17
161
37
9
16
35
1.82
14868--15072
22
9.6
22
76
10
158
41
9
14
33
1.79
14996--15148
38
3.9
38
75
15
125
39
9
15
35
1.81
15058--15085
13
2.2
13
100
0
56
46
14
0
39
1.44
15036--15104
35
1.9
36
88
2
104
42
8
11
37
1.72
15071--15154
23
3.7
22
79
4
89
35
9
16
38
1.81
15213--15309
45
2.2
44
83
5
115
32
11
16
39
1.84
15071--15352
22
12.7
22
70
12
130
34
10
16
37
1.84
17521--17563
8
5.4
8
86
8
52
58
0
0
41
0.98
28581--28617
15
2.6
15
87
8
51
78
0
16
5
0.93
44355--44388
17
2.0
17
94
0
59
76
2
17
2
1.04
56647--56678
13
2.5
13
94
0
55
40
12
0
46
1.42
59099--59137
20
2.0
19
85
14
53
33
35
2
28
1.71
66473--66515
22
1.9
22
85
4
59
23
4
20
51
1.66
74079--74128
2
27.0
2
80
15
54
42
0
2
56
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75585--75616
2
15.5
2
93
6
55
50
3
0
46
1.17
83667--83711
2
23.0
2
95
4
83
51
0
0
48
1.00

Tables:   1

The End!