Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016449.1 Corchorus olitorius cultivar O-4 contig16482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73822

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16307--16726
215
2.0
211
90
3
655
29
17
17
35
1.93
27708--27752
16
2.9
15
90
6
63
46
0
0
53
1.00
34432--34488
28
2.0
28
100
0
114
24
7
17
50
1.70
38245--38316
38
1.9
37
91
2
117
29
4
22
44
1.71
44484--44594
31
3.5
31
77
3
105
19
26
23
30
1.98
48228--48259
7
4.6
7
92
0
55
56
0
3
40
1.15
49994--50982
494
2.0
495
96
0
1827
31
17
14
37
1.89
51674--51717
18
2.4
18
92
0
70
50
0
40
9
1.34
51704--51772
21
3.3
20
78
8
66
50
8
40
0
1.33
63234--63458
120
1.9
120
99
0
441
31
22
15
30
1.95
72857--73462
322
1.9
323
97
0
1151
25
20
14
39
1.90

Tables:   1

The End!