Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016450.1 Corchorus olitorius cultivar O-4 contig16483, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123925

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--42
2
21.0
2
90
9
68
47
0
2
50
1.14
427--457
2
15.5
2
100
0
62
48
0
0
51
1.00
2299--2351
27
2.0
27
96
0
97
45
13
9
32
1.75
11801--11907
43
2.5
43
87
0
160
17
28
14
39
1.90
12356--12596
121
2.0
122
87
2
351
13
21
21
42
1.88
12660--13075
20
20.5
20
74
4
350
37
6
27
28
1.82
12661--13075
40
10.2
40
91
2
641
37
6
27
28
1.82
12661--13075
162
2.6
162
91
1
679
37
6
27
28
1.82
15666--22336
340
20.0
332
86
5
8829
32
14
16
36
1.89
17678--17712
13
2.8
13
86
4
54
31
5
17
45
1.71
22381--22464
41
2.0
42
88
2
125
35
13
15
35
1.86
22811--22915
54
1.9
53
83
7
131
30
27
21
20
1.98
31078--31159
21
4.0
21
85
3
112
50
15
10
23
1.76
32440--32567
59
2.2
59
94
0
229
41
11
14
32
1.81
32920--32958
18
2.4
16
87
12
53
53
10
17
17
1.71
32926--32960
18
1.9
18
100
0
70
51
14
17
17
1.77
49283--49321
6
6.7
6
94
5
62
0
25
0
74
0.82
56272--56332
29
2.1
30
96
3
115
47
6
26
19
1.74
61256--61285
14
2.1
14
93
0
51
66
10
10
13
1.44
62589--62618
15
2.0
15
93
0
51
43
0
0
56
0.99
62995--63024
14
2.2
13
94
5
51
0
30
0
70
0.88
65820--65849
9
3.3
9
100
0
60
23
46
20
10
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69888--69947
19
3.1
19
79
9
66
10
15
28
46
1.77
69894--69947
21
2.7
21
85
5
76
9
16
25
48
1.76
71197--71228
2
16.0
2
100
0
64
50
0
0
50
1.00
72893--72922
1
30.0
1
100
0
60
0
0
0
100
0.00
80079--80107
7
4.3
7
91
8
51
44
0
13
41
1.44
80079--80107
13
2.1
14
93
6
51
44
0
13
41
1.44
99155--99218
28
2.2
28
81
16
76
23
6
7
62
1.45
111547--111700
77
2.0
75
91
5
247
27
5
24
42
1.75
111801--111866
30
2.2
31
78
15
84
19
9
24
46
1.78
112731--112789
3
19.7
3
87
0
55
42
54
3
0
1.17
112731--112793
24
2.8
23
88
7
85
44
52
3
0
1.17
112731--112804
27
2.9
27
84
6
91
45
50
2
1
1.24
118727--118757
15
2.1
15
93
0
53
22
25
9
41
1.84
121572--121617
17
2.5
19
86
6
69
30
0
0
69
0.89
122088--122243
80
2.0
80
94
0
276
32
12
32
22
1.91

Tables:   1

The End!