Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016454.1 Corchorus olitorius cultivar O-4 contig16487, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6526
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27


Found at i:306 original size:45 final size:45

Alignment explanation


    Indices: 250--350  Score: 175
    Period size: 45  Copynumber: 2.2  Consensus size: 45

        240 AAGTTAGAAT

                  *               *                      
        250 CCATGACTGCCAAATGCTTTAAGGAGATCAAAGAGAGCTTTGGCC
          1 CCATGATTGCCAAATGCTTTAAAGAGATCAAAGAGAGCTTTGGCC

                                                        *
        295 CCATGATTGCCAAATGCTTTAAAGAGATCAAAGAGAGCTTTGGCT
          1 CCATGATTGCCAAATGCTTTAAAGAGATCAAAGAGAGCTTTGGCC

                       
        340 CCATGATTGCC
          1 CCATGATTGCC

        351 GAGTGCACAA


Statistics
Matches: 53,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  45   53  1.00

ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25


Consensus pattern (45 bp):   
CCATGATTGCCAAATGCTTTAAAGAGATCAAAGAGAGCTTTGGCC
Done.