Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016456.1 Corchorus olitorius cultivar O-4 contig16489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108959

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1835--1871
19
2.0
19
89
5
58
35
0
0
64
0.94
2070--2101
11
2.9
11
100
0
64
28
9
43
18
1.81
3531--3589
30
1.9
31
96
3
111
47
3
23
25
1.67
4223--4322
50
2.0
51
92
4
166
26
22
11
41
1.86
19698--19778
29
2.7
30
78
14
80
29
9
22
38
1.86
20327--20647
161
2.0
160
93
3
558
47
14
13
24
1.80
27508--27621
31
3.7
31
88
2
149
36
24
21
17
1.94
42292--42325
17
2.0
17
88
0
50
58
14
17
8
1.61
44232--44292
31
2.0
31
83
6
79
36
36
16
11
1.85
57581--57641
21
2.9
21
92
0
104
36
8
21
34
1.83
59954--59994
21
2.0
21
95
0
73
31
17
9
41
1.82
60071--60115
4
11.8
4
90
9
76
26
0
22
51
1.49
63075--63131
30
1.9
30
85
7
80
35
17
14
33
1.90
63564--63708
60
2.4
61
82
9
188
31
20
13
35
1.91
63631--63710
29
2.7
30
74
3
72
31
18
12
37
1.88
66941--66971
16
1.9
16
93
0
53
45
16
22
16
1.85
71289--71318
15
2.0
15
100
0
60
86
6
0
6
0.70
71550--71719
31
5.6
31
69
16
115
28
19
18
33
1.96
71550--71711
60
2.7
60
88
0
243
27
19
19
33
1.96
74658--74697
20
2.0
20
100
0
80
35
25
20
20
1.96
82505--82577
2
38.5
2
71
22
52
50
1
4
43
1.29
90457--90496
21
2.1
19
86
13
55
20
27
15
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90702--90752
24
2.1
24
96
0
93
3
25
3
66
1.26
107276--107318
2
21.5
2
100
0
86
51
0
0
48
1.00

Tables:   1

The End!