Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016457.1 Corchorus olitorius cultivar O-4 contig16490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21824

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--101
31
3.2
31
75
13
96
39
11
21
27
1.88
56--125
29
2.3
31
87
4
99
37
12
20
30
1.90
2015--2068
29
1.9
28
85
7
74
55
7
12
24
1.63
8412--8522
55
2.0
56
89
1
170
45
14
19
20
1.85
9381--9411
15
2.1
15
100
0
62
38
12
35
12
1.82
12554--12606
22
2.4
22
96
0
97
22
9
9
58
1.58
15205--15261
26
2.2
26
87
6
80
5
19
22
52
1.66
15206--15276
26
2.7
26
81
14
76
4
19
25
50
1.65
15168--15330
69
2.4
69
95
0
290
3
20
25
50
1.65
15269--15357
26
3.5
26
92
3
146
3
23
23
49
1.65
15334--15628
54
5.4
55
80
10
329
7
33
24
34
1.84
15333--15628
108
2.7
108
87
4
400
7
33
24
34
1.84
15604--15650
20
2.3
20
92
0
76
4
25
19
51
1.65
15932--15963
16
2.0
16
93
0
55
18
40
6
34
1.76
16682--20450
332
11.4
333
86
2
4960
31
16
16
35
1.91
16705--20450
989
3.8
985
85
3
4940
31
16
16
35
1.91
20238--20661
210
2.0
210
89
1
654
29
19
17
33
1.95
20447--21824
333
4.1
334
89
1
2074
31
17
16
34
1.93

Tables:   1

The End!