Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016460.1 Corchorus olitorius cultivar O-4 contig16493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137082

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10623--10703
26
3.1
26
71
13
76
53
22
9
14
1.71
10594--10703
52
2.1
53
89
3
168
51
21
10
15
1.74
10949--10982
3
11.3
3
87
12
52
64
2
0
32
1.08
30444--30470
2
13.5
2
100
0
54
48
0
0
51
1.00
33706--33740
2
16.5
2
91
5
52
48
2
2
45
1.32
33701--33733
16
2.1
16
100
0
66
42
6
6
45
1.53
36489--36518
14
2.1
14
93
0
51
43
3
6
46
1.46
42557--42699
30
4.8
29
81
8
144
24
24
26
24
2.00
42575--42699
60
2.1
60
84
3
162
25
24
27
22
2.00
44124--44175
14
3.6
14
74
23
54
25
5
13
55
1.60
44126--44188
29
2.2
29
97
0
117
25
6
12
55
1.60
51373--51413
18
2.3
18
87
8
57
7
9
0
82
0.83
51373--51413
15
2.6
16
88
7
57
7
9
0
82
0.83
57397--57432
3
12.0
3
93
0
63
63
0
33
2
1.08
57900--57924
4
6.2
4
100
0
50
52
0
0
48
1.00
58253--58290
17
2.3
17
81
4
51
52
5
0
42
1.24
59429--59460
3
10.3
3
93
6
55
31
0
3
65
1.08
62724--62775
12
4.2
12
76
9
50
42
30
3
23
1.72
72371--72436
7
9.1
7
76
18
64
66
1
0
31
1.01
81515--81565
17
2.9
17
80
13
59
82
3
13
0
0.81
83141--83238
29
3.3
27
68
25
65
37
15
17
29
1.90
83141--83257
60
2.0
60
91
5
193
36
14
21
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83164--83254
31
3.0
31
66
15
82
37
13
20
28
1.90
88475--88544
34
2.1
34
97
0
131
47
20
14
18
1.83
89030--89087
21
2.9
19
84
5
71
31
20
12
36
1.89
90701--90784
43
2.0
43
100
0
168
38
11
19
30
1.88
97117--97148
7
4.7
7
96
3
57
0
9
0
90
0.45
111359--111391
14
2.4
14
90
5
50
54
12
6
27
1.60
112802--112829
3
9.3
3
100
0
56
35
0
0
64
0.94
129800--130048
121
2.1
121
97
0
471
24
10
14
49
1.75
135400--135631
116
2.0
116
98
0
446
24
26
22
26
2.00
135975--137076
321
3.4
323
86
4
1543
33
15
15
34
1.90

Tables:   1

The End!