Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016461.1 Corchorus olitorius cultivar O-4 contig16494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51273

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1107
316
3.4
316
85
6
1438
32
15
15
35
1.90
899--1335
226
1.9
227
89
2
682
30
17
17
34
1.93
1126--2983
330
5.6
330
90
1
2865
32
15
16
35
1.90
1127--2987
659
2.8
655
91
2
2987
32
15
16
35
1.90
2776--3210
227
1.9
227
86
2
615
30
16
16
37
1.90
2448--3846
542
2.5
547
89
3
2095
32
14
16
36
1.89
3976--4918
334
2.8
332
86
4
1292
35
14
13
36
1.86
4914--6675
327
5.3
328
85
4
2196
34
14
15
35
1.88
6727--6794
36
1.9
36
84
3
93
26
2
8
61
1.40
26419--26448
13
2.3
13
94
0
51
33
10
13
43
1.77
26569--26616
18
2.7
18
93
0
87
58
16
0
25
1.38
27043--27090
17
2.8
17
83
0
60
25
22
16
35
1.95
35084--35433
172
2.0
172
99
0
693
37
17
11
33
1.86
39448--39503
20
2.7
21
75
10
62
28
25
26
19
1.99
43084--43119
2
18.5
2
88
5
56
47
0
52
0
1.00

Tables:   1

The End!