Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016462.1 Corchorus olitorius cultivar O-4 contig16495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76489

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--46
2
21.5
2
100
0
86
48
0
0
51
1.00
8162--8194
17
1.9
17
93
0
57
0
0
15
84
0.61
14354--14424
35
2.0
35
97
0
133
42
21
18
18
1.90
20317--20364
24
2.0
24
88
8
71
43
8
16
31
1.78
31562--31699
71
2.0
70
88
7
208
42
18
10
27
1.84
31945--31975
14
2.2
14
100
0
62
64
6
6
22
1.40
32826--32920
31
3.1
31
100
0
190
52
12
12
22
1.72
32857--33102
108
2.3
108
93
2
426
50
14
11
23
1.76
32965--33031
31
2.2
31
97
0
125
53
10
11
23
1.68
32975--33033
16
3.7
17
67
15
54
52
10
13
23
1.71
57810--58016
103
2.0
103
95
0
369
32
9
12
45
1.73
58241--58268
12
2.3
12
100
0
56
14
28
7
50
1.69
71692--72942
325
3.8
328
86
3
1717
35
17
14
32
1.90
72873--73021
79
1.9
79
90
2
237
36
14
14
33
1.87
72203--73675
736
2.0
736
86
4
2087
34
18
14
32
1.91
72942--75455
655
3.8
651
85
6
3240
34
18
14
32
1.91
73752--75455
333
5.2
332
85
4
2214
34
18
14
32
1.91
75470--76489
332
3.1
333
90
3
1560
34
19
14
31
1.92

Tables:   1

The End!