Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016463.1 Corchorus olitorius cultivar O-4 contig16496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73367

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3148
333
9.6
332
85
4
4253
33
18
15
31
1.93
21--3148
654
4.8
653
85
4
4113
34
18
15
31
1.93
1--3148
987
3.2
986
89
2
4676
33
18
15
31
1.93
6201--6326
30
4.2
30
85
3
148
39
19
13
26
1.89
9659--10272
330
1.9
328
88
3
930
34
18
14
31
1.92
9993--10561
287
2.0
289
85
2
786
33
19
16
30
1.94
10276--15489
333
15.8
331
85
4
6684
34
18
15
32
1.92
10276--15489
992
5.3
991
86
4
6830
34
18
15
32
1.92
15357--15651
162
1.8
162
86
2
432
33
15
19
30
1.94
15485--17947
331
7.5
330
83
5
2944
35
18
14
31
1.91
21419--21466
22
2.1
24
92
7
82
8
22
14
54
1.67
24684--24758
38
1.9
39
84
7
100
56
1
0
42
1.08
24753--24796
11
4.0
11
82
8
54
50
18
11
20
1.77
26556--26594
20
1.9
20
85
15
53
10
17
0
71
1.12
29247--29312
31
2.1
32
86
10
93
33
21
9
36
1.85
31568--31594
2
13.5
2
100
0
54
48
0
0
51
1.00
38878--38916
19
2.0
20
90
5
62
43
5
23
28
1.75
45027--45088
30
2.1
30
90
0
97
25
20
4
48
1.70
49089--49128
21
1.9
21
100
0
80
30
20
10
40
1.85
68696--68738
21
2.0
21
95
0
77
34
13
25
25
1.93
72434--72537
31
3.4
31
72
2
84
34
18
9
37
1.83

Tables:   1

The End!