Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016464.1 Corchorus olitorius cultivar O-4 contig16497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7681
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


Found at i:22 original size:16 final size:17

Alignment explanation


    Indices: 1--40  Score: 55
    Period size: 16  Copynumber: 2.4  Consensus size: 17

                     *       
          1 TTTTTTCTGGGTT-TTT
          1 TTTTTTCTGCGTTCTTT

                              
         17 TTTTTTCTGCGTTCGTTT
          1 TTTTTTCTGCGTTC-TTT

                  
         35 TTTTTT
          1 TTTTTT

         41 TTTTTAGATT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  16   12  0.57
  18    9  0.43

ACGTcount: A:0.00, C:0.10, G:0.15, T:0.75


Consensus pattern (17 bp):   
TTTTTTCTGCGTTCTTT
Done.