Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016465.1 Corchorus olitorius cultivar O-4 contig16498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61317

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1033--1071
15
2.6
15
87
0
51
41
15
43
0
1.46
10754--10804
16
3.1
16
72
13
50
74
1
23
0
0.92
18031--18066
19
1.9
18
88
5
54
44
13
16
25
1.85
25985--26017
13
2.5
13
85
14
50
9
15
0
75
1.03
31415--31532
57
2.1
57
100
0
236
36
11
13
38
1.82
33268--33339
29
2.5
29
100
0
144
54
6
31
6
1.54
42253--42312
31
2.0
31
83
3
77
23
13
20
43
1.86
46423--46576
31
5.0
31
85
0
146
22
21
20
35
1.96
46502--46588
31
2.8
31
89
0
129
16
19
25
39
1.92
48055--48159
31
3.4
31
86
0
156
32
22
24
20
1.98
58270--58306
17
2.1
18
90
5
58
18
10
0
70
1.16

Tables:   1

The End!