genome.fa.s16467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016467.1 Corchorus olitorius cultivar O-4 contig16500, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67915

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19--2476	322	7.5	333	77	9	1905	35	16	15	32	1.91
840--2483	653	2.5	647	77	8	1626	35	16	15	33	1.90
5236--5311	21	3.7	21	69	13	59	30	27	6	35	1.82
5324--5390	20	3.1	22	63	10	57	28	31	5	34	1.81
5226--5390	41	4.0	41	90	6	226	29	28	7	35	1.84
5226--5380	83	1.9	82	89	4	240	28	27	7	36	1.85
5360--5507	33	4.5	33	96	0	260	34	27	6	31	1.83
6054--6186	66	2.0	66	97	0	248	33	16	23	27	1.96
14552--14579	2	14.0	2	100	0	56	50	0	50	0	1.00
16005--17924	332	5.9	324	78	8	1868	36	16	14	32	1.90
16694--19127	315	7.6	314	77	9	1567	34	17	15	32	1.91
15996--17946	645	3.0	643	88	4	2803	36	16	14	31	1.90
17947--19127	326	3.6	331	83	7	1376	33	17	15	32	1.92
19134--20224	334	3.3	333	78	8	927	32	15	15	35	1.90
19480--21712	826	2.7	826	89	2	3325	34	14	15	35	1.88
22615--23112	257	2.0	250	88	4	739	31	16	15	36	1.90
22433--23744	580	2.3	569	84	4	1672	33	15	14	36	1.88
24408--24446	20	2.0	20	89	0	60	53	2	5	38	1.37
38271--38304	17	2.1	17	88	5	52	52	2	0	44	1.16
43492--43523	5	6.8	5	89	10	50	43	0	0	56	0.99
43481--43519	15	2.6	15	87	0	51	43	5	0	51	1.24
48238--48274	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54254--54422	38	4.2	39	73	20	150	32	17	21	28	1.96

Tables:   1

The End!