Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016469.1 Corchorus olitorius cultivar O-4 contig16502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110808

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9170--9228
19
3.0
19
80
9
64
33
15
11
38
1.84
10502--10560
21
3.0
19
82
5
64
32
16
11
38
1.86
10503--10560
19
2.9
19
82
5
62
31
17
12
39
1.86
10622--10687
34
1.9
34
100
0
132
50
6
12
31
1.64
13779--13805
14
1.9
14
100
0
54
55
0
44
0
0.99
20927--21041
31
3.7
31
86
0
140
15
19
26
39
1.91
20920--21041
62
2.0
62
85
0
163
15
18
26
39
1.91
20916--21051
62
2.2
62
82
0
155
16
19
26
37
1.93
29661--29958
156
1.9
158
88
1
456
33
14
14
38
1.86
30069--30117
25
2.0
24
84
11
64
44
8
2
44
1.45
35286--35318
2
16.5
2
100
0
66
48
0
0
51
1.00
42013--42047
17
2.1
17
100
0
70
22
22
25
28
1.99
52490--52551
27
2.3
27
83
5
81
27
33
19
19
1.96
64605--64643
2
19.5
2
94
0
69
51
2
0
46
1.14
76761--76804
21
2.0
24
86
13
67
9
54
0
36
1.32
85741--85782
19
2.2
19
83
8
50
54
7
2
35
1.41
107601--107626
13
2.0
13
100
0
52
15
15
7
61
1.55
110768--110808
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!