Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016471.1 Corchorus olitorius cultivar O-4 contig16504, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3051
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Found at i:272 original size:126 final size:125
Alignment explanation
Indices: 43--847 Score: 1270
Period size: 126 Copynumber: 6.4 Consensus size: 125
33 TCATATAATT
* * *
43 CATATTCAGTAGGGTCATGTAGTT-TATATTCAGTAGGGTTCATGTAATTGCATATTCAGTAGGG
1 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGG-ACATGTAGTTGCATATTCAGTAGGG
* * *
107 ACAAGTAGTTACATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
65 ACATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
168 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGA
1 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGG-
*
233 ACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
65 ACATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
*
294 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGA
1 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGA
359 CATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
66 CATGTAGTTGCATATTCAGTA-GGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
*
420 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGT
1 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGA
485 CATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
66 CATGTAGTTGCATATTCAGTAGGG-ACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
* * *
546 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGT
1 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGA
* * * *
611 CATGTAGTTGCATATTCATTAGGGTCATTTAGTTGCATATTCAGTAGGGGACATGTAGTTG
66 CATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTA-GGGTCATGTAGTTG
* *
672 CATATTCAGTAGGGGTCATGTAGTTGCATATTCAGTAGGAGACATGTAGTTGCATATTTAGCAGG
1 CATATTCAGTA-GGGTCATGTAGTTGCATATTCAGTAGG-GACATGTAGTTGCATATTCAGTAGG
* * * *
737 GAATATGTAGTTGCATATTCAGTAGGGGGACATGTTGTTGCAGATTCAGTAGGGGCATGTAGTTG
64 G-ACATGTAGTTGCATATTCAGTA--GGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
* * * *
802 TATATTCAGTAGGGGCATGTAGTTGTATATTTAGTAGGGGACATGT
1 CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTA-GGGACATGT
848 TTTCACGAGC
Statistics
Matches: 638, Mismatches: 31, Indels: 18
0.93 0.05 0.03
Matches are distributed among these distances:
125 92 0.14
126 403 0.63
127 26 0.04
128 23 0.04
129 48 0.08
130 25 0.04
131 21 0.03
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (125 bp):
CATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGA
CATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTG
Found at i:316 original size:151 final size:151
Alignment explanation
Indices: 43--847 Score: 1301
Period size: 151 Copynumber: 5.3 Consensus size: 151
33 TCATATAATT
* * ** *
43 CATATTCAGTAGGGTCATGTAGTT-TATATTCAGTAGGGTTCATGTAATTGCATATTCAGTAGGG
1 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGG
* *
107 ACAAGTAGTTACATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATA
66 ACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATA
172 TTCAGTAGGGTCATGTAGTTG
131 TTCAGTAGGGTCATGTAGTTG
*
193 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGAACATGTAGTTGCATATTCAGTAGGG
1 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGG
*
258 TCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATA
66 ACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATA
323 TTCAGTAGGGTCATGTAGTTG
131 TTCAGTAGGGTCATGTAGTTG
344 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGG
1 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGG
* *
409 TCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGACATGTAGTTGCATA
66 ACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATA
474 TTCAGTAGGGTCATGTAGTTG
131 TTCAGTAGGGTCATGTAGTTG
*
495 CATATTCAGTAGGGAACATGTAGTTGCATATTCAGTA-GGGTCATGTAGTTGCATATTCAGTAGG
1 CATATTCAGTAGGG-ACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGG
559 GACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCAT
65 GACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCAT
* *
624 ATTCATTAGGGTCATTTAGTTG
130 ATTCAGTAGGGTCATGTAGTTG
*
646 CATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGGGTCATGTAGTTGCATATTCAGTAGG
1 CATATTCAGTA-GGGACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGG
* * * *
711 AGACATGTAGTTGCATATTTAGCAGGGAAT-ATGTAGTTGCATATTCAGTAGGGGGACATGTTGT
65 -GACATGTAGTTGCATATTCAGTAGGG--TCATGTAGTTGCATATTCAGTA--GGGTCATGTAGT
* *
775 TGCAGATTCAGTAGGGGCATGTAGTTG
125 TGCATATTCAGTAGGGTCATGTAGTTG
* * * *
802 TATATTCAGTAGGGGCATGTAGTTGTATATTTAGTAGGGGACATGT
1 CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGGACATGT
848 TTTCACGAGC
Statistics
Matches: 618, Mismatches: 28, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
150 23 0.04
151 424 0.69
152 52 0.08
153 24 0.04
154 20 0.03
155 32 0.05
156 43 0.07
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (151 bp):
CATATTCAGTAGGGACATGTAGTTGCATATTCAGTAGGGGACATGTAGTTGCATATTCAGTAGGG
ACATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATATTCAGTAGGGTCATGTAGTTGCATA
TTCAGTAGGGTCATGTAGTTG
Found at i:841 original size:25 final size:25
Alignment explanation
Indices: 43--840 Score: 1249
Period size: 25 Copynumber: 31.6 Consensus size: 25
33 TCATATAATT
43 CATATTCAGTAGGGTCATGTAGTT-
1 CATATTCAGTAGGGTCATGTAGTTG
* *
67 TATATTCAGTAGGGTTCATGTAATTG
1 CATATTCAGTAGGG-TCATGTAGTTG
* * *
93 CATATTCAGTAGGGACAAGTAGTTA
1 CATATTCAGTAGGGTCATGTAGTTG
118 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
143 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
168 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
193 CATATTCAGTAGGGACATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
218 CATATTCAGTAGGGAACATGTAGTTG
1 CATATTCAGTAGGG-TCATGTAGTTG
244 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
269 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
294 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
319 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
344 CATATTCAGTAGGGACATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
369 CATATTCAGTAGGGGACATGTAGTTG
1 CATATTCAGTA-GGGTCATGTAGTTG
395 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
420 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
445 CATATTCAGTAGGGACATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
470 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
495 CATATTCAGTAGGGAACATGTAGTTG
1 CATATTCAGTAGGG-TCATGTAGTTG
521 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
546 CATATTCAGTAGGGACATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
571 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
596 CATATTCAGTAGGGTCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
* *
621 CATATTCATTAGGGTCATTTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
*
646 CATATTCAGTAGGGGACATGTAGTTG
1 CATATTCAGTA-GGGTCATGTAGTTG
672 CATATTCAGTAGGGGTCATGTAGTTG
1 CATATTCAGTA-GGGTCATGTAGTTG
*
698 CATATTCAGTAGGAGACATGTAGTTG
1 CATATTCAGTAGG-GTCATGTAGTTG
* *
724 CATATTTAGCAGGGAAT-ATGTAGTTG
1 CATATTCAGTAGGG--TCATGTAGTTG
* *
750 CATATTCAGTAGGGGGACATGTTGTTG
1 CATATTCAGTA--GGGTCATGTAGTTG
* *
777 CAGATTCAGTAGGGGCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
* *
802 TATATTCAGTAGGGGCATGTAGTTG
1 CATATTCAGTAGGGTCATGTAGTTG
* *
827 TATATTTAGTAGGG
1 CATATTCAGTAGGG
841 GACATGTTTT
Statistics
Matches: 722, Mismatches: 40, Indels: 23
0.92 0.05 0.03
Matches are distributed among these distances:
24 13 0.02
25 513 0.71
26 175 0.24
27 18 0.02
28 3 0.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (25 bp):
CATATTCAGTAGGGTCATGTAGTTG
Found at i:1797 original size:322 final size:323
Alignment explanation
Indices: 845--3048 Score: 2570
Period size: 322 Copynumber: 6.9 Consensus size: 323
835 GTAGGGGACA
* * *
845 TGTTTTCACGAGCATCTGAATCTTAG-TTCTATTAAATT-GTAAATTAATTTGGAAAAAAATGGA
1 TGTTTTTACGAGCATCTGAATCTT-GTTTCTATTTAATTAG-AAATTAATTCGGAAAAAAATGGA
* * * *
908 AAAACTATATTATTAGAAGTGTGAAAAACCCGCCAATCTTTTTGGAGTTGAGTTATATA-TATTT
64 AAAAC--TA-TATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATATACT-TTT
* * * * *
972 TCTTAGTATTGTTGCAAAAATTTCATG-GAAAAA-TTTTCGGATAAGTTTTTAACCGAAAATCGT
125 TCTGAGTATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCA-TTTTTAGCCG-AAATCGT
* ** * *
1035 GTAC--A--ATCACGGGTTTTAACTAAAAACGCGTTTCGGGGCCTCAGTTCAGTTTTGCATGATT
188 GTACTAACCATCACGGTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATT
* * * ** *
1096 TTTGGCAGAAAAACTCCTTGAAATATCTATATTCATATAACCAAGTCTCAGCCACATTAAATTTA
253 TTTGGCAGAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATA
1161 AGGATT
318 AGGATT
* * *
1167 TATTTTTACGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTC-G-AAAAAATGGAAA
1 TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * * * *
1230 AA-TGATATTAGAAGCGAGAGAATCCCGTCAATCTTTTTGGCGTTGAA-TTATAAAC-TTTTCTA
66 AACT-ATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTT-AAGTTATATACTTTTTCTG
*** * * *
1292 AGTATTAAGGCGAAAATATTC-GGAAAAAAATTTTTAGG-TCAGTTTTTAGCCGAAA-CTGTGTA
129 AGTATTGTTGCAAAAAT-TTCACGAAAAAAATTTTTCGGATCA-TTTTTAGCCGAAATC-GTGTA
* * * **
1354 CTAATCATCACGGTTTTTGGCTAAAAACACGTTTCGGGGCCTCGGCTCAGTTTCACATGATTTTT
191 CTAACCATCACGGTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTTT
* * * *
1419 GGCAGAAAAACTCCTTGAAATATGTATATTTATCTAACCAAATTTCAGCTGCATTGGATATAAGG
256 GGCAGAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGG
1484 ATT
321 ATT
* * *
1487 TGTTTTTACGAGCATCTAAATCTTGTTTCTTTTTAATTTGAAATTAATTCGGAAAAAAATGGAAA
1 TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * * * *
1552 AACTATACTAGAAGCGTGAAAAACCAGTCAATCTTTTTGCCAG-TAAGTTATATGCTTTTTATGA
66 AACTATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGC-GTTAAGTTATATACTTTTTCTGA
* * * * * *
1616 GTATTGTTGCATAAGTTTCAAGAAAAAAAATTTT-GGATC-TGTTTAGTCGAAATCGTGTACTAA
130 GTATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCATTTTTAGCCGAAATCGTGTACTAA
* **
1679 CCATCACGGTTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGAAATTTGGC
195 CCATCACGG-TTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTTTGGC
* *
1744 AGAAAAACTCCTTGATATATCTATATTCATCTAATCAAATCTCAGCCGCATTGGATATAAGGATT
259 AGAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGATT
* * *
1809 TGTTTTCACGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCGAAAAAAAATGGAAA
1 TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * *
1874 AACTATATTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTTCTGAG
66 AACTATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATATACTTTTTCTGAG
* *
1939 TATTGTTGCAAAAATTTCACG-GAAAAATTTTTCGGATCAGTTTTTAGTCGAAATCGTG---T-A
131 TATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCA-TTTTTAGCCGAAATCGTGTACTAA
* * * *
1999 CCATCATGG-TTTTTGACTAAAAACGCGTTTCGTGGCCCCGACTCAGTTTTGCATGATTTTTGGC
195 CCATCACGGTTTTTTG-CTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTTTGGC
* * * * * *
2063 AGAAAAACTCCTTGAAATATCTATA-TCTATATAACCAAGTCTAAGCCACATTTGATTTAAGGTA
259 AGAAAAACTCCTTGAAATATCTATATTC-ATCTAACCAAATCTCAGCCGCATTGGATATAAGG-A
2127 TT
322 TT
* * * *
2129 TATTTTTGCGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTC-G-AAAAAATGGAAA
1 TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * * * *
2192 AA-TGATATTAGAAGCGAGAAAATCTCGTCAATCTTTTTGGCGTTGAA-TTATAAAC-TTTTCTA
66 AACT-ATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTT-AAGTTATATACTTTTTCTG
*** * *
2254 AGTATTAAGGCGAAAAGA-TTCA-GAAAAAAATTTTTAGG-TCAGTTTTTAGCCGAAA-CTATGT
129 AGTATTGTTGC-AAAA-ATTTCACGAAAAAAATTTTTCGGATCA-TTTTTAGCCGAAATC-GTGT
* * *
2315 ACTAATCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTCGCATGATTTT
190 ACTAACCATCACGGTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTT
* *
2380 TGGCAGAAAAACTCCTTGAAATATCTATATTTATCTAACCAAATTTCAGCCGCATTGGATATAAG
255 TGGCAGAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAG
2445 GATT
320 GATT
* * *
2449 TGTTTTTACGAGCATCTGAATCTTGTTTCTTTTTAATTAGAAATTAATTTGGGAAAAAATGGAAA
1 TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* *
2514 AACTATACTAGAAGCGTGAAAAACCAGTCAATCTTTTTGGCAG-TAAGTTATATGA-TTTTTCTG
66 AACTATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGC-GTTAAGTTATAT-ACTTTTTCTG
* * * * *
2577 AGTATTGTTGCATAAGTTTCACGAAAAAAA-ATTTCGGATAAGTTTTTAGCCGAAATCTTGTACT
129 AGTATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCA-TTTTTAGCCGAAATCGTGTACT
* * * *
2641 ATCCATTACGGTTTCTTTGTTAAAAACGCGTTTC-GGGCCTCGGCTCAGTTTTGCATGACTTTTG
193 AACCATCACGGTTT-TTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTTTG
* * * *
2705 GCAGAAAAACTACTTG-ATTATCTATATTCATTTAACCAAATCACAGCCGCATTGGATATAAGGA
257 GCAGAAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGA
2769 TT
322 TT
* * * **
2771 TGTTTTCAGGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCAAAAAAAAATGGAAA
1 TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * ** * * *
2836 AACTATATTAGAAGTGTAAAAAACCCGTCAATCTTTTTGGCGTTGTGTTATAAATTTTTTCTAAG
66 AACTATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATATACTTTTTCTGAG
2901 TATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACGT-
131 TATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCA-TTTTTAGCCGAAATCGTGTAC-TA
* * * * *
2965 A-CATCATGG-TTTTAGACTAAAAACGCGTTTCGGGGCCCCGGCTTAGTTTTGCAAGATTTTTGG
194 ACCATCACGGTTTTTTG-CTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTTTGG
*
3028 CAGAAAGACTCCTTGAAATAT
258 CAGAAAAACTCCTTGAAATAT
3049 TTA
Statistics
Matches: 1602, Mismatches: 219, Indels: 121
0.82 0.11 0.06
Matches are distributed among these distances:
315 1 0.00
316 30 0.02
317 94 0.06
318 93 0.06
319 95 0.06
320 276 0.17
321 169 0.11
322 640 0.40
323 168 0.10
324 36 0.02
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (323 bp):
TGTTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
AACTATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATATACTTTTTCTGAG
TATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCATTTTTAGCCGAAATCGTGTACTAAC
CATCACGGTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGATTTTTGGCAG
AAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGATT
Found at i:2143 original size:642 final size:633
Alignment explanation
Indices: 853--3048 Score: 2528
Period size: 640 Copynumber: 3.4 Consensus size: 633
843 CATGTTTTCA
* * *
853 CGAGCATCTGAATCTTAG-TTCTATTAAATT-GTAAATTAATTTGGAAAAAAATGGAAAAACTAT
1 CGAGCATCTAAATCTT-GTTTCTATTTAATTAG-AAATTAATTCGGAAAAAAATGGAAAAAC--T
* * * *
916 ATTATTAGAAGTGTGAAAAACCCGCCAATCTTTTTGGAGTTGAGTTATATATA-TTTTCT-TAGT
62 A-TATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATA-A-ACTTTT-TATAGT
* * * *
979 ATTGTTGCAAAAATTTCATG--GAAAAATTTTCGGATAAGTTTTTAACCGAAAATCGTGTAC-A-
123 ATTGTTGCAAAAATTTCAAGAAAAAAAATTTTCGGATCA-TTTTTAGCCG-AAATCGTGTACTAC
* * *
1040 ATCACGGGTTTTAACTAAAAACGCGTTTCGGGGCCTCAG-TTCAGTTTTGCATGATTTTTGGCAG
186 ATCACGGTTTTTAGCTAAAAACGCGTTTCGGGGCCTCGGCTT-AGTTTTGCATGATTTTTGGCAG
* * * ** * *
1104 AAAAACTCCTTGAAATATCTATATTCATATAACCAAGTCTCAGCCACATTAAATTTAAGGATTTA
250 AAAAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGATTTG
* *
1169 TTTTTACGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAAA-T
315 TTTTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAAACT
* * * * * * *
1233 GATATTAGAAGCGAGAGAATCCCGTCAATCTTTTTGGCGTTGAATTATAAACTTTTCTAAGTATT
380 -ATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTCTGAGTATT
*** * *
1298 AAGGCGAAAATATT--CGGAAAAAAATTTTTAGG-TCAGTTTTTAGCCGAAA-CTGTGTACTAAT
444 GTTGCAAAAAT-TTCACGG--AAAAATTTTTCGGATCAGTTTTTAGCCGAAATC-GTGTAC----
* * **
1359 CATCACGGTTTTTGGCTAAAAACACGTTTCGGGGCCTCGGCTCAGTTTCACATGATTTTTGGCAG
501 CATCATGGTTTTT-GCTAAAAACGCGTTTC-GGGCCTCGGCTCAGTTTTGCATGATTTTTGGCAG
* * * * *
1424 AAAAACTCCTTGAAATATGTATATTTATCTAACCAAATTTCAGCTGCATTGGATATAAGGATTTG
564 AAAAACTCCTTGAAATATCTATA-TTATATAACCAAATCTAAGCCGCATTGGATATAAGGATTTG
*
1489 TTTTTA
628 TTTTTG
* * *
1495 CGAGCATCTAAATCTTGTTTCTTTTTAATTTGAAATTAATTCGGAAAAAAATGGAAAAACTATAC
1 CGAGCATCTAAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACTATAT
* * **
1560 TAGAAGCGTGAAAAACCAGTCAATCTTTTTGCCAG-TAAGTTATATGCTTTTTATGAGTATTGTT
66 TAGAAGCGTGAAAAACCCGTCAATCTTTTTGGC-GTTAAGTTATAAACTTTTTAT-AGTATTGTT
* * * *
1624 GCATAAGTTTCAAGAAAAAAAATTTT-GGATC-TGTTTAGTCGAAATCGTGTACTAACCATCACG
129 GCAAAAATTTCAAGAAAAAAAATTTTCGGATCATTTTTAGCCGAAATCGTGTACT-A-CATCACG
* **
1687 GTTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGAAATTTGGCAGAAAAAC
192 G-TTTTTAGCTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGATTTTTGGCAGAAAAAC
* * *
1752 TCCTTGATATATCTATATTCATCTAATCAAATCTCAGCCGCATTGGATATAAGGATTTGTTTTCA
256 TCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGATTTGTTTTTA
*
1817 CGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCGAAAAAAAATGGAAAAACTATAT
321 CGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCG--AAAAAATGGAAAAACTATAT
*
1882 TAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTTCTGAGTATTGTTG
384 TAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATA-TTTTTCTGAGTATTGTTG
*
1947 CAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGTCGAAATCGTGTACCATCATGGTTTT
448 CAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACCATCATGGTTTT
* *
2012 TGACTAAAAACGCGTTTCGTGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAAACTCCTTG
513 TG-CTAAAAACGCGTTTCG-GGCCTCGGCTCAGTTTTGCATGATTTTTGGCAGAAAAACTCCTTG
* * * * *
2077 AAATATCTATATCTATATAACCAAGTCTAAGCCACATTTGATTTAAGGTATTTATTTTTG
576 AAATATCTATAT-TATATAACCAAATCTAAGCCGCATTGGATATAAGG-ATTTGTTTTTG
*
2137 CGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTC-G-AAAAAATGGAAAAA-TGATA
1 CGAGCATCTAAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACT-ATA
* * * **
2199 TTAGAAGCGAGAAAATCTCGTCAATCTTTTTGGCGTTGAA-TTATAAACTTTTCTA-AGTATTAA
65 TTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTT-AAGTTATAAACTTTT-TATAGTATTGT
* * * *
2262 GGCGAAAAGA-TTC-AGAAAAAAATTTTTAGG-TCAGTTTTTAGCCGAAA-CTATGTACTAATCA
128 TGC-AAAA-ATTTCAAGAAAAAAAATTTTCGGATCA-TTTTTAGCCGAAATC-GTGTACT-A-CA
* * *
2323 TCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTCGCATGATTTTTGGCAGAA
187 TCACGGTTTTTAGCTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGATTTTTGGCAGAA
* *
2388 AAACTCCTTGAAATATCTATATTTATCTAACCAAATTTCAGCCGCATTGGATATAAGGATTTGTT
252 AAACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGATTTGTT
* *
2453 TTTACGAGCATCTGAATCTTGTTTCTTTTTAATTAGAAATTAATTTGGGAAAAAATGGAAAAACT
317 TTTACGAGCATCTGAATCTTGTTTCTATTTAATTAGAAATTAA-TT-CGAAAAAATGGAAAAACT
* * *
2518 ATACTAGAAGCGTGAAAAACCAGTCAATCTTTTTGGCAG-TAAGTTATATGATTTTTCTGAGTAT
380 ATATTAGAAGCGTGAAAAACCCGTCAATCTTTTTGGC-GTTGAGTTATAT-ATTTTTCTGAGTAT
* * * ** * * *
2582 TGTTGCATAAGTTTCACGAAAAAAAATTTCGGATAAGTTTTTAGCCGAAATCTTGTACTATCCAT
443 TGTTGCAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACCAT-CA-
* *
2647 TACGGTTTCTTTGTTAAAAACGCGTTTCGGGCCTCGGCTCAGTTTTGCATGACTTTTGGCAGAAA
506 T--GG-TT-TTTGCTAAAAACGCGTTTCGGGCCTCGGCTCAGTTTTGCATGATTTTTGGCAGAAA
* * *
2712 AACTACTTG-ATTATCTATATTCATTTAACCAAATC-ACAGCCGCATTGGATATAAGGATTTGTT
567 AACTCCTTGAAATATCTATATT-ATATAACCAAATCTA-AGCCGCATTGGATATAAGGATTTGTT
*
2775 TTCAG
630 TT-TG
* * **
2780 -GAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCAAAAAAAAATGGAAAAACTATAT
1 CGAGCATCTAAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACTATAT
* * ** * *
2844 TAGAAGTGTAAAAAACCCGTCAATCTTTTTGGCGTTGTGTTATAAATTTTTTCTAAGTATTGTTG
66 TAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATAAACTTTTTAT-AGTATTGTTG
* * *
2909 CAAAAATTTCACGAAAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACGTACATCATGG
130 CAAAAATTTCAAGAAAAAAAATTTTCGGATCA-TTTTTAGCCGAAATCGTGTAC-TACATCACGG
* * *
2974 -TTTTAGACTAAAAACGCGTTTCGGGGCCCCGGCTTAGTTTTGCAAGATTTTTGGCAGAAAGACT
193 TTTTTAG-CTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGATTTTTGGCAGAAAAACT
3038 CCTTGAAATAT
257 CCTTGAAATAT
3049 TTA
Statistics
Matches: 1336, Mismatches: 157, Indels: 119
0.83 0.10 0.07
Matches are distributed among these distances:
637 12 0.01
638 12 0.01
639 84 0.06
640 354 0.26
641 159 0.12
642 299 0.22
643 43 0.03
644 187 0.14
645 153 0.11
646 31 0.02
647 2 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (633 bp):
CGAGCATCTAAATCTTGTTTCTATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACTATAT
TAGAAGCGTGAAAAACCCGTCAATCTTTTTGGCGTTAAGTTATAAACTTTTTATAGTATTGTTGC
AAAAATTTCAAGAAAAAAAATTTTCGGATCATTTTTAGCCGAAATCGTGTACTACATCACGGTTT
TTAGCTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGATTTTTGGCAGAAAAACTCCTT
GAAATATCTATATTCATCTAACCAAATCTCAGCCGCATTGGATATAAGGATTTGTTTTTACGAGC
ATCTGAATCTTGTTTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAAACTATATTAGAAGC
GTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTCTGAGTATTGTTGCAAAAATT
TCACGGAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACCATCATGGTTTTTGCTAAAA
ACGCGTTTCGGGCCTCGGCTCAGTTTTGCATGATTTTTGGCAGAAAAACTCCTTGAAATATCTAT
ATTATATAACCAAATCTAAGCCGCATTGGATATAAGGATTTGTTTTTG
Found at i:2786 original size:962 final size:961
Alignment explanation
Indices: 845--3048 Score: 3630
Period size: 962 Copynumber: 2.3 Consensus size: 961
835 GTAGGGGACA
* *
845 TGTTTTCACGAGCATCTGAATCTTAG-TTCTATTAAATT-GTAAATTAATTTGGAAAAAAATGGA
1 TGTTTTCACGAGCATCTGAATCTT-GTTTCTATTAAATTAG-AAATTAATTCGAAAAAAAATGGA
* * *
908 AAAACTATATTATTAGAAGTGTGAAAAACCCGCCAATCTTTTTGGAGTTGAGTTATATATATTTT
64 AAAAC--TA-TATTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTT
* * * *
973 CTTAGTATTGTTGCAAAAATTTCATGGAAAAA-TTTTCGGATAAGTTTTTAACCGAAAATCGTGT
126 CTAAGTATTGTTGCAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGCCG-AAATCGTGT
* * * * * *
1037 ACAATCACGGGTTTTAACTAAAAACGCGTTTCGGGGCCTC-AGTTCAGTTTTGCATGATTTTTGG
190 ACCATCATGGTTTTTGACTAAAAACGCGTTTCGGGGCCCCGA-CTCAGTTTTGCATGATTTTTGG
*
1101 CAGAAAAACTCCTTGAAATATCTATATTCATATAACCAAGTCTCAGCCACATTAAATTTAAGGAT
254 CAGAAAAACTCCTTGAAATATCTATATTCATATAACCAAGTCTAAGCCACATTAAATTTAAGGAT
1166 TTATTTTTACGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAA
319 TTATTTTTACGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAA
*
1231 ATGATATTAGAAGCGAGAGAATCCCGTCAATCTTTTTGGCGTTGAATTATAAACTTTTCTAAGTA
384 ATGATATTAGAAGCGAGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATAAACTTTTCTAAGTA
* * *
1296 TTAAGGCGAAAATATTCGGAAAAAAATTTTTAGGTCAGTTTTTAGCCGAAACTGTGTACTAATCA
449 TTAAGGCGAAAAGATTCAGAAAAAAATTTTTAGGTCAGTTTTTAGCCGAAACTATGTACTAATCA
1361 TCACGGTTTTTGGCTAAAAACACGTTTCGGGGCCTCGGCTCAGTTTCACATGATTTTTGGCAGAA
514 TCACGGTTTTTGGCTAAAAACACGTTTCGGGGCCTCGGCTCAGTTTCACATGATTTTTGGCAGAA
* *
1426 AAACTCCTTGAAATATGTATATTTATCTAACCAAATTTCAGCTGCATTGGATATAAGGATTTGTT
579 AAACTCCTTGAAATATCTATATTTATCTAACCAAATTTCAGCCGCATTGGATATAAGGATTTGTT
*
1491 TTTACGAGCATCTAAATCTTGTTTCTTTTTAATTTGAAATTAATTCGGAAAAAAATGGAAAAACT
644 TTTACGAGCATCTAAATCTTGTTTCTTTTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACT
*
1556 ATACTAGAAGCGTGAAAAACCAGTCAATCTTTTTGCCAGTAAGTTATATGCTTTTTATGAGTATT
709 ATACTAGAAGCGTGAAAAACCAGTCAATCTTTTTGCCAGTAAGTTATATGATTTTTATGAGTATT
* *
1621 GTTGCATAAGTTTCAAGAAAAAAAATTTTGGATCTGTTTAGTCGAAATCGTGTACTAACCATCAC
774 GTTGCATAAGTTTCAAGAAAAAAAATTTCGGATCTGTTTAGCCGAAATCGTGTACTAACCATCAC
* *
1686 GGTTTTTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTTAGTTTTGCATGAAATTTGGCAGAAAAA
839 GGTTTCTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGAAATTTGGCAGAAAAA
* * *
1751 CTCCTTGATATATCTATATTCATCTAATCAAATCTCAGCCGCATTGGATATAAGGATT
904 CTACTTGATATATCTATATTCATCTAACCAAATCACAGCCGCATTGGATATAAGGATT
1809 TGTTTTCACGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCGAAAAAAAATGGAAA
1 TGTTTTCACGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCGAAAAAAAATGGAAA
*
1874 AACTATATTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTTCTGAG
66 AACTATATTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTTCTAAG
*
1939 TATTGTTGCAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGTCGAAATCGTGTACCATC
131 TATTGTTGCAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACCATC
*
2004 ATGGTTTTTGACTAAAAACGCGTTTCGTGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAA
196 ATGGTTTTTGACTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAA
**
2069 ACTCCTTGAAATATCTATA-TCTATATAACCAAGTCTAAGCCACATTTGATTTAAGGTATTTATT
261 ACTCCTTGAAATATCTATATTC-ATATAACCAAGTCTAAGCCACATTAAATTTAAGG-ATTTATT
*
2133 TTTGCGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAAATGAT
324 TTTACGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAAATGAT
*
2198 ATTAGAAGCGAGAAAATCTCGTCAATCTTTTTGGCGTTGAATTATAAACTTTTCTAAGTATTAAG
389 ATTAGAAGCGAGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATAAACTTTTCTAAGTATTAAG
2263 GCGAAAAGATTCAGAAAAAAATTTTTAGGTCAGTTTTTAGCCGAAACTATGTACTAATCATCACG
454 GCGAAAAGATTCAGAAAAAAATTTTTAGGTCAGTTTTTAGCCGAAACTATGTACTAATCATCACG
* *
2328 GTTTTTGGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTCGCATGATTTTTGGCAGAAAAACT
519 GTTTTTGGCTAAAAACACGTTTCGGGGCCTCGGCTCAGTTTCACATGATTTTTGGCAGAAAAACT
2393 CCTTGAAATATCTATATTTATCTAACCAAATTTCAGCCGCATTGGATATAAGGATTTGTTTTTAC
584 CCTTGAAATATCTATATTTATCTAACCAAATTTCAGCCGCATTGGATATAAGGATTTGTTTTTAC
* * *
2458 GAGCATCTGAATCTTGTTTCTTTTTAATTAGAAATTAATTTGGGAAAAAATGGAAAAACTATACT
649 GAGCATCTAAATCTTGTTTCTTTTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACTATACT
* *
2523 AGAAGCGTGAAAAACCAGTCAATCTTTTTGGCAGTAAGTTATATGATTTTTCTGAGTATTGTTGC
714 AGAAGCGTGAAAAACCAGTCAATCTTTTTGCCAGTAAGTTATATGATTTTTATGAGTATTGTTGC
* * * * * *
2588 ATAAGTTTCACGAAAAAAAATTTCGGATAAGTTTTTAGCCGAAATCTTGTACTATCCATTACGGT
779 ATAAGTTTCAAGAAAAAAAATTTCGGAT--CTGTTTAGCCGAAATCGTGTACTAACCATCACGGT
* **
2653 TTCTTTGTTAAAAACGCGTTTC-GGGCCTCGGCTCAGTTTTGCATGACTTTTGGCAGAAAAACTA
842 TTCTTTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGAAATTTGGCAGAAAAACTA
*
2717 CTTGAT-TATCTATATTCATTTAACCAAATCACAGCCGCATTGGATATAAGGATT
907 CTTGATATATCTATATTCATCTAACCAAATCACAGCCGCATTGGATATAAGGATT
* *
2771 TGTTTTCAGGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCAAAAAAAAATGGAAA
1 TGTTTTCACGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCGAAAAAAAATGGAAA
* * *
2836 AACTATATTAGAAGTGTAAAAAACCCGTCAATCTTTTTGGCGTTGTGTTATAAATTTTTTCTAAG
66 AACTATATTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTTCTAAG
*
2901 TATTGTTGCAAAAATTTCACGAAAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACGTA
131 TATTGTTGCAAAAATTTCACG-GAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTAC---
* * * *
2966 CATCATGGTTTTAGACTAAAAACGCGTTTCGGGGCCCCGGCTTAGTTTTGCAAGATTTTTGGCAG
192 CATCATGGTTTTTGACTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAG
*
3031 AAAGACTCCTTGAAATAT
257 AAAAACTCCTTGAAATAT
3049 TTA
Statistics
Matches: 1160, Mismatches: 68, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
960 2 0.00
961 203 0.17
962 683 0.59
963 83 0.07
964 111 0.10
965 1 0.00
966 77 0.07
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (961 bp):
TGTTTTCACGAGCATCTGAATCTTGTTTCTATTAAATTAGAAATTAATTCGAAAAAAAATGGAAA
AACTATATTAGAAGTGTGAAAAACCCGTCAATCTTTTTGGCGTTGAGTTATATATTTTTTCTAAG
TATTGTTGCAAAAATTTCACGGAAAAATTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACCATC
ATGGTTTTTGACTAAAAACGCGTTTCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAA
ACTCCTTGAAATATCTATATTCATATAACCAAGTCTAAGCCACATTAAATTTAAGGATTTATTTT
TACGAGCATCTAAATCTTGATTCTATTTAATTAGAAATTAATTCGAAAAAATGGAAAAATGATAT
TAGAAGCGAGAAAATCCCGTCAATCTTTTTGGCGTTGAATTATAAACTTTTCTAAGTATTAAGGC
GAAAAGATTCAGAAAAAAATTTTTAGGTCAGTTTTTAGCCGAAACTATGTACTAATCATCACGGT
TTTTGGCTAAAAACACGTTTCGGGGCCTCGGCTCAGTTTCACATGATTTTTGGCAGAAAAACTCC
TTGAAATATCTATATTTATCTAACCAAATTTCAGCCGCATTGGATATAAGGATTTGTTTTTACGA
GCATCTAAATCTTGTTTCTTTTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAACTATACTAG
AAGCGTGAAAAACCAGTCAATCTTTTTGCCAGTAAGTTATATGATTTTTATGAGTATTGTTGCAT
AAGTTTCAAGAAAAAAAATTTCGGATCTGTTTAGCCGAAATCGTGTACTAACCATCACGGTTTCT
TTGCTAAAAACGCGTTTCGGGGCCTCGGCTCAGTTTTGCATGAAATTTGGCAGAAAAACTACTTG
ATATATCTATATTCATCTAACCAAATCACAGCCGCATTGGATATAAGGATT
Done.