Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016472.1 Corchorus olitorius cultivar O-4 contig16505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94532

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41--1505
318
4.6
314
80
7
1435
34
14
16
34
1.89
59--1502
637
2.3
626
80
7
1535
34
15
16
34
1.89
5981--6146
72
2.3
72
87
2
226
21
12
22
44
1.84
12690--12726
18
2.1
18
89
0
56
27
21
21
29
1.99
20073--20114
2
21.0
2
100
0
84
50
0
0
50
1.00
23074--23144
32
2.3
31
80
7
81
33
22
11
32
1.90
23791--23862
33
2.2
33
94
0
126
26
8
22
43
1.81
32237--32479
124
2.0
123
89
2
373
32
7
20
39
1.81
43854--43963
55
2.0
55
100
0
220
41
20
16
21
1.90
54726--54808
41
2.0
41
92
0
139
57
6
8
27
1.52
75179--75233
27
2.0
27
100
0
110
43
29
14
12
1.82
78450--78486
19
1.9
19
94
0
65
40
13
18
27
1.88
88904--88954
25
2.1
25
88
3
77
52
23
11
11
1.70
89543--89683
31
4.5
31
91
0
192
29
25
26
18
1.98
92169--92323
51
3.0
51
91
0
256
38
16
18
27
1.91

Tables:   1

The End!