Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016475.1 Corchorus olitorius cultivar O-4 contig16508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70336

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
330--419
45
2.0
45
97
0
171
47
13
13
25
1.79
5678--10693
332
15.1
331
82
5
5451
33
13
15
38
1.86
5678--10693
665
7.6
666
86
4
5584
33
13
15
38
1.86
11823--11884
30
2.1
30
90
6
99
27
20
4
46
1.71
12125--12166
15
2.7
15
88
3
57
83
9
2
4
0.88
12170--12251
41
2.0
41
97
0
155
31
32
9
25
1.88
12333--12371
20
2.0
20
84
0
51
10
12
2
74
1.17
12776--13028
51
5.0
50
93
0
398
38
16
17
26
1.91
19029--19133
51
2.0
52
88
1
158
40
15
19
24
1.90
19087--19198
60
1.9
59
88
1
170
37
12
21
28
1.90
19725--19763
9
4.3
9
93
0
60
43
0
35
20
1.52
31345--31371
13
2.1
13
100
0
54
48
14
0
37
1.45
46007--46050
20
2.0
21
83
12
54
31
11
15
40
1.83
54778--54836
30
2.0
30
100
0
118
33
16
10
38
1.83
60807--60934
62
2.0
64
92
3
215
32
6
12
48
1.66
65118--65155
14
2.7
15
84
8
53
36
0
0
63
0.95
67180--67258
36
2.2
36
97
2
151
39
10
7
43
1.67
69075--69128
18
3.0
18
94
0
99
40
16
25
16
1.89

Tables:   1

The End!