Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016476.1 Corchorus olitorius cultivar O-4 contig16509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105982

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1776--1854
36
2.2
36
97
2
151
39
10
7
43
1.67
3670--3723
18
3.0
18
94
0
99
40
16
25
16
1.89
6353--6384
16
2.0
16
100
0
64
31
18
12
37
1.88
12576--12615
19
2.1
19
86
9
55
40
7
0
52
1.30
12585--12629
18
2.5
17
82
10
54
51
6
0
42
1.28
15759--15805
23
2.0
23
95
0
85
36
17
2
44
1.60
43047--43095
4
12.2
4
80
8
55
0
22
4
73
1.00
43033--43088
28
2.0
29
96
3
105
0
23
7
69
1.12
49701--49735
3
11.7
3
87
0
52
0
25
40
34
1.56
49698--49735
15
2.5
15
100
0
76
0
23
42
34
1.55
69394--69423
12
2.5
12
100
0
60
40
10
23
26
1.86
86304--86365
27
2.3
27
88
0
97
46
4
41
6
1.51
87852--87891
20
2.0
20
100
0
80
35
20
5
40
1.74
88411--88471
24
2.5
24
91
2
95
47
3
42
6
1.45
88889--88928
15
2.7
16
77
14
50
12
0
30
57
1.36
94745--94794
17
2.9
17
87
0
73
24
14
24
38
1.92
98908--100239
335
4.0
329
80
7
1374
37
14
14
33
1.87
100721--100774
27
2.0
27
85
7
74
66
3
9
20
1.35

Tables:   1

The End!