Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016477.1 Corchorus olitorius cultivar O-4 contig16510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37857
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Found at i:1334 original size:21 final size:21
Alignment explanation
Indices: 1308--1352 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
1298 CTTAAATCCA
1308 ATGTTGCTTAGATTTGGTTAG
1 ATGTTGCTTAGATTTGGTTAG
*
1329 ATGTTGGTTAGATTTGGTTAG
1 ATGTTGCTTAGATTTGGTTAG
1350 ATG
1 ATG
1353 ATGAAAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (21 bp):
ATGTTGCTTAGATTTGGTTAG
Found at i:1337 original size:11 final size:11
Alignment explanation
Indices: 1308--1352 Score: 67
Period size: 10 Copynumber: 4.3 Consensus size: 11
1298 CTTAAATCCA
*
1308 ATGTTGCTTAG
1 ATGTTGGTTAG
1319 AT-TTGGTTAG
1 ATGTTGGTTAG
1329 ATGTTGGTTAG
1 ATGTTGGTTAG
1340 AT-TTGGTTAG
1 ATGTTGGTTAG
1350 ATG
1 ATG
1353 ATGAAAAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 19 0.61
11 12 0.39
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (11 bp):
ATGTTGGTTAG
Found at i:1739 original size:15 final size:16
Alignment explanation
Indices: 1721--1750 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1711 ATAAATAATA
1721 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
1736 ATATTATAATCTAAA
1 ATATTATAATCTAAA
1751 AATAATCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:10611 original size:31 final size:31
Alignment explanation
Indices: 10573--10635 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
10563 ACAACGCCAC
10573 ATACTCATGAGGCAAACCCCAAGAGCATGTA
1 ATACTCATGAGGCAAACCCCAAGAGCATGTA
*
10604 ATACTCATGAGGTAAACCCCAAGAGCATGTA
1 ATACTCATGAGGCAAACCCCAAGAGCATGTA
10635 A
1 A
10636 GGCTAGCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (31 bp):
ATACTCATGAGGCAAACCCCAAGAGCATGTA
Found at i:11238 original size:39 final size:38
Alignment explanation
Indices: 11119--11259 Score: 192
Period size: 38 Copynumber: 3.7 Consensus size: 38
11109 TAGCCAACGG
**
11119 TTAACCCCCTGAGACACGGGTCCACTCTTACCAACAGT
1 TTAACCCCCTGAGGTACGGGTCCACTCTTACCAACAGT
* *
11157 TTAACCCCCTGAGGCACGAGTCCACTCTTACCAACAGT
1 TTAACCCCCTGAGGTACGGGTCCACTCTTACCAACAGT
* * * *
11195 TTAACCCCTTGTGGTATGGGTCCACTCTTTACCATCAGT
1 TTAACCCCCTGAGGTACGGGTCCACTC-TTACCAACAGT
*
11234 TTAACCCCCTGAGGTGCGGGTCCACT
1 TTAACCCCCTGAGGTACGGGTCCACT
11260 ATGCACATCC
Statistics
Matches: 90, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 58 0.64
39 32 0.36
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (38 bp):
TTAACCCCCTGAGGTACGGGTCCACTCTTACCAACAGT
Found at i:14783 original size:39 final size:38
Alignment explanation
Indices: 14657--14804 Score: 217
Period size: 38 Copynumber: 3.9 Consensus size: 38
14647 CTCGATCTAG
14657 CCAACAG-TTAACCCCCTGAGGCACGGGTCCACTCTTA
1 CCAACAGTTTAACCCCCTGAGGCACGGGTCCACTCTTA
*
14694 CCAACAGTTTAACCCCCTGAGGCACGAGTCCACTCTTA
1 CCAACAGTTTAACCCCCTGAGGCACGGGTCCACTCTTA
* * *
14732 CCAACAGTTTAACCCCCTGTGGTATGGGTCCACTCTTTA
1 CCAACAGTTTAACCCCCTGAGGCACGGGTCCACTC-TTA
* **
14771 CCATCAGTTTAACCCCCTGAGGTGCGGGTCCACT
1 CCAACAGTTTAACCCCCTGAGGCACGGGTCCACT
14805 ATGCACAGCC
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
37 7 0.07
38 60 0.60
39 33 0.33
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (38 bp):
CCAACAGTTTAACCCCCTGAGGCACGGGTCCACTCTTA
Found at i:18213 original size:328 final size:321
Alignment explanation
Indices: 17277--19158 Score: 1608
Period size: 328 Copynumber: 5.8 Consensus size: 321
17267 TTCGGCTAAA
* * *
17277 ATTT-GGC-AAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTATAATAC-ACAGAAAAAA
1 ATTTCGGCTAAAAACTGACCCGAAAAGTTTTT-CTCAATTTTTTGCCACAATACTA-A-AAAAAA
* * * * * * * *** * * **
17339 TTTAT-AATTCAACGCC-AAAAGATTAAAAGGTTTTTCATGCTTCTAATATTGGTATACCATTTT
63 TATATAAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGTTTCTAATATCATTTTTCTTTTTT
* * * * * *
17402 TTTCCAAATTTATTTCTAATTAAATCGAAACAAGATTCAGATTCTCCTAAAAA-AAA-CCTTAAA
128 TTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAA
* * * * ** *
17465 TCCAATGTGGCTGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAAC
193 TCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AAT
* * * *
17529 CATGCAAAAC-AGAGTCGAGAC-CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTATA
257 CATGCAAAACTAGAGCCG-GGCTCCAG-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
17592 CG
320 CG
* * * * * * * *
17594 ATTTGGGCT-AAAACTAAACCGAAAATTTTTATCTCAAATCTTTGTCACAATACTCAGAAAAAAT
1 ATTTCGGCTAAAAACTGACCCGAAAAGTTTT-TCTCAATTTTTTGCCACAATACT-AAAAAAAAT
* ** * **
17658 ATAT-AATTCAATGCCAAAAAAATTGAAGGGGTTTTCACGCATCTAATATCGTTTTTCCATTTTT
64 ATATAAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGTTTCTAATATCATTTTTCTTTTTTT
* * * *
17722 TTT-GAATTGATTTTTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATTCATAAAT
129 TTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAAT
* * * *
17786 GCAATGTGGTTGAGATTTGGCTAGATGAATA-AGATATTTCAAGGAGT-TTAT-CTGCCAAAAAT
194 CCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTT-TGC-GCCCAAAAT
* * * *
17848 CATGCAAAACT-GAACCGGGGC-CCCGAAACGTGTTTTTAGCCAAAAATCGTGATGGTTAGTACA
257 CATGCAAAACTAGAGCC-GGGCTCCAG-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACA
17911 CG
320 CG
* *
17913 ATTTCGGCTAAAAACTGACCCGAAAAGTTCTCTCTCAAGTTTTTGCCACAATACTAAAAAATATA
1 ATTTCGGCTAAAAACTGACCCGAAAAGTT-TTTCTCAATTTTTTGCCACAATACTAAAAAA-A-A
* * * * *
17978 TATATACAAATCAACT-CCAGAAAGATTAAAAGGTTTTTCACGTTTCTAATATCATTTTTCTTTT
63 TATATA-AATTCAA-TGCCAAAAAGATTGAAGGGGTTTTCACGTTTCTAATATCATTTTTC--TT
* * * * *
18042 TTCTTTTTTACGAATTAAATTGTAATTAAAT-GAAAACAAGATTTAGATGCTCATAAAAACAAAA
124 TT-TTTTTT-CGAATTAATTTCTAATTAAATCG-AAACAAGATTCAGATGCTCGTAAAAACAAAT
* * *
18106 CCTTAAATCCAATATGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCC
186 CCATAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCC
* * * * **
18171 CAAAATCTTGCAAAACTAG-GTCGGGCTCCAGAACACGTTTTTA-ACATAAAATTGTGATGGTTA
251 CAAAATCATGCAAAACTAGAGCCGGGCTCCAGAACGCGTTTTTAGCCA-AAAACCGTGATGGTTA
* *
18234 GTTCATG
315 GTACACG
* * * * * * *
18241 ATTTCGGCTAAAAACTAACCCGAAAAGTTTTTTTTAATTGTTTGCCATAATACTTAGAAAAAATT
1 ATTTCGGCTAAAAACTGACCCGAAAAGTTTTTCTCAATTTTTTGCCACAATAC-TAAAAAAAATA
* * *
18306 TAT-AATTCAATGTCAAAAAGATTGAAGGGGTTTTCACGTTTCTAAATATCGTTTTCCCATTTTT
65 TATAAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGTTTCT-AATATCATTTT-TC-TTTTT
** * * * *
18370 TAATT--AATTAATTTCTAATTAAATCGAAAAAAGATTCAGGTGCT-TTAAAAACAAATCCATAT
127 TTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAA
* * * * *
18432 ATCCAAGGTGGCTGAGATTTGGTTCCG-TGAATATAGATATTTCAAGGTGTTTTTGCGCCCAACA
192 ATCCAATGTGGCTGAGATTTGGTT-AGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAA
* * * *
18496 TCAAGCAAAAC-AGAGCC-TGCTCCGGAACGCGTTTTTAGCCAAAAAAAACGTGAT-G---GTAC
256 TCATGCAAAACTAGAGCCGGGCTCCAGAACGCGTTTTTAGCC--AAAAACCGTGATGGTTAGTAC
*
18555 ACA
319 ACG
* * * * * *
18558 ATTTGGGCTAAAATTTTGCAAAAATTGACCTGAAAAGTTCTTCCTCAATTTTTTGTCACAATGCT
1 ATTTCGGC--------T--AAAAACTGACCCGAAAAGTT-TTTCTCAATTTTTTGCCACAATACT
* * * * * * * * *
18623 CATAAAAAATATA-CAATTAAACGTCAAAAAGATTAAAGGGTTTTTCAAGTATCTAATATCATTT
55 -AAAAAAAATATATAAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGTTTCTAATATCATTT
** * * * * * *
18687 TTCCATTTTTTTCCAAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAGATATAA
119 TTCTTTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
* *
18752 ATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATTGATATTTCAAGGAGTCTTTGCG
184 ATCCATAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCG
* * * * * *
18817 CCCAAAATAATGCAAAACT-GAGCCTGGCTCCAGAACGCCTTTGTAGTCAAAAACCATGATGGTT
249 CCCAAAATCATGCAAAACTAGAGCCGGGCTCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTT
18881 AGTACACG
314 AGTACACG
* *
18889 ATTTTCGGATAAAAACTGACCCGAAAAGTTTTTCTCAATTTTTTGCAACAATACTCAGAAAAAAA
1 A-TTTCGGCTAAAAACTGACCCGAAAAGTTTTTCTCAATTTTTTGCCACAATACT-A-AAAAAAA
* * * * * * * ***
18954 -AAATATAATTCAATGACAAAAAGATTGACA-CGATTTCCACGCTTCTAAATATC-GTTTTCCCA
63 TATATA-AATTCAATGCCAAAAAGATTGA-AGGGGTTTTCACGTTTCT-AATATCATTTTTCTTT
* * * *
19016 TTTTTTACGAAATAATTTCTAATGAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCAT
125 TTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCAT
* * * * * *
19081 ATATCCAATGTGGCTCAAATTTTGTTCGATGAATATAGATTTTTCAAGGAGTCTTTGCGCCCAAA
190 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAA
19146 ATCATGCAAAACT
255 ATCATGCAAAACT
19159 GAGTCTGACT
Statistics
Matches: 1261, Mismatches: 233, Indels: 136
0.77 0.14 0.08
Matches are distributed among these distances:
317 15 0.01
318 100 0.08
319 152 0.12
320 154 0.12
321 74 0.06
322 26 0.02
323 202 0.16
324 45 0.04
325 22 0.02
326 13 0.01
327 97 0.08
328 289 0.23
329 57 0.05
330 3 0.00
331 7 0.01
332 5 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (321 bp):
ATTTCGGCTAAAAACTGACCCGAAAAGTTTTTCTCAATTTTTTGCCACAATACTAAAAAAAATAT
ATAAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGTTTCTAATATCATTTTTCTTTTTTTTT
TCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCC
AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATG
CAAAACTAGAGCCGGGCTCCAGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACG
Found at i:18718 original size:648 final size:646
Alignment explanation
Indices: 17265--19172 Score: 2091
Period size: 648 Copynumber: 2.9 Consensus size: 646
17255 CCGGTATACG
* * * *
17265 ATTTCGGCTAAAATTTGGCAAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTATAATACA
1 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGC-ACAATACT
* * * * * *** *
17330 CAGAAAAAATTTATAATTCAACG-CCAAAAGATTAAAAGGTTTTTCATGCTTCTAATATTGGTAT
65 CAAAAAAAATATACAATTCAACGTCAAAAAGATTAAAAGGTTTTTCAAG-TTCTAATATCATTTT
* * * *
17394 ACCATTTTTTTCCAAATTTATTTCTAATTAAATCG-AAACAAGATTCAGATTCTCCT-AAAAAAA
129 TCCATTTTTTTCCAAATTAATTTCTAATTAAAT-GAAAACAAGATTCAGATGCTCATAAAAAAAA
* * * * *
17457 ACCTTAAATCCAATGTGGCTGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-
193 ACCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGC
* * * *
17521 CCAATAACCATGCAAAAC-AGAGTCGAGAC-CCCGAAACGCGTTTTTAGCCAAAAACCGTGATGG
258 CCAA-AATCATGCAAAACTAGAGTCG-GGCTCCAG-AACGCGTTTTTAGACAAAAACCGTGATGG
* * * *
17584 TTAGTAT-ACGATTTGGGCT-AAAACTAAACCGAAAA-TTTTTATCTCAAATCTTTGTCACAATA
320 TTAGT-TCACGATTTCGGCTAAAAACTAACCCGAAAAGTTTTT-T-TCAATTCTTTGCCACAATA
* * *
17646 CTCAGAAAAAATATATAATTCAATGCCAAAAAAATTGAAGGGGTTTTCACGCATCT-AATATCGT
382 CTCAGAAAAAATATATAATTCAATGACAAAAAGATTGAAGGGGTTTTCACGCTTCTAAATATCGT
* * *
17710 TTTTCCATTTTTT-TTGAATTGATTTTTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAAC
447 TTTCCCATTTTTTATT-AATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAAC
* * * * * * *
17774 AAATTCATAAATGCAATGTGGTTGAGATTTGGCTAGATGAATA-AGATATTTCAAGGAGTTTAT-
511 AAATCCATATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTTTTTG
* * * * * * *
17837 CTGCCAAAAATCATGCAAAACTGAACCGGGGCCCCGAAACGTGTTTTTAGCCAAAAATCGTGATG
576 C-GCCCAAAATCATGCAAAACTGAGCC--TGCTCCGGAACGCGTTTTTAGCCAAAAAACGTGATG
*
17902 GTTAGTACACG
638 G-T-GTACACA
* *
17913 ATTTCGGC--------T--AAAAACTGACCCGAAAAGTTC-TCTCTCAAGTTTTTGCCACAATAC
1 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTC-CTCAATTTTTTG-CACAATAC
* * * *
17967 TAAAAAATATATATATACAAATCAAC-TCCAGAAAGATTAAAAGGTTTTTCACGTTTCTAATATC
64 TCAAAAA-A-A-ATATACAATTCAACGT-CAAAAAGATTAAAAGGTTTTTCAAG-TTCTAATATC
** * * * * *
18031 ATTTTTCTTTTTTCTTTTTTACGAATTAAATTGTAATTAAATGAAAACAAGATTTAGATGCTCAT
124 ATTTTTC---CAT-TTTTTTCCAAATTAATTTCTAATTAAATGAAAACAAGATTCAGATGCTCAT
*
18096 AAAAACAAAACCTTAAATCCAATATGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
185 AAAAA-AAAACCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
* * **
18161 TCTTTGTGCCCAAAATCTTGCAAAACTAG-GTCGGGCTCCAGAACACGTTTTTA-ACATAAAATT
249 TCTTTGTGCCCAAAATCATGCAAAACTAGAGTCGGGCTCCAGAACGCGTTTTTAGACA-AAAACC
* * * *
18224 GTGATGGTTAGTTCATGATTTCGGCTAAAAACTAACCCGAAAAGTTTTTTTTAATTGTTTGCCAT
313 GTGATGGTTAGTTCACGATTTCGGCTAAAAACTAACCCGAAAAGTTTTTTTCAATTCTTTGCCAC
* * * *
18289 AATACTTAGAAAAAATTTATAATTCAATGTCAAAAAGATTGAAGGGGTTTTCACGTTTCTAAATA
378 AATACTCAGAAAAAATATATAATTCAATGACAAAAAGATTGAAGGGGTTTTCACGCTTCTAAATA
* ** *
18354 TCGTTTTCCCATTTTTTAATTAATTAATTTCTAATTAAATCGAAAAAAGATTCAGGTGCT-TTAA
443 TCGTTTTCCCATTTTTT-ATTAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAA
* *
18418 AAACAAATCCATATATCCAAGGTGGCTGAGATTTGGTTCCG-TGAATATAGATATTTCAAGGTGT
507 AAACAAATCCATATATCCAATGTGGCTGAGATTTGGTT-CGATGAATATAGATATTTCAAGGAGT
* * *
18482 TTTTGCGCCCAACATCAAGCAAAACAGAGCCTGCTCCGGAACGCGTTTTTAGCCAAAAAAAACGT
571 TTTTGCGCCCAAAATCATGCAAAACTGAGCCTGCTCCGGAACGCGTTTTTAGCC--AAAAAACGT
18547 GAT-G-GTACACA
634 GATGGTGTACACA
* * *
18558 ATTTGGGCTAAAATTTTGCAAAAATTGACCTGAAAAGTTCTTCCTCAATTTTTTGTCACAATGCT
1 ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTG-CACAATACT
* * *
18623 CATAAAAAATATACAATTAAACGTCAAAAAGATTAAAGGGTTTTTCAAGTATCTAATATCATTTT
65 CAAAAAAAATATACAATTCAACGTCAAAAAGATTAAAAGGTTTTTCAAGT-TCTAATATCATTTT
* * * *
18688 TCCATTTTTTTCCAAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAGATATAAA
129 TCCATTTTTTTCCAAATTAATTTCTAATTAAATGAAAACAAGATTCAGATGCTCATA-AAAAAAA
* * *
18753 TCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATTGATATTTCAAGGAGTCTTTGCGC
193 ACCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGC
* * * * * * *
18818 CCAAAATAATGCAAAACT-GAGCCTGGCTCCAGAACGCCTTTGTAGTCAAAAACCATGATGGTTA
258 CCAAAATCATGCAAAACTAGAGTCGGGCTCCAGAACGCGTTTTTAGACAAAAACCGTGATGGTTA
* * * * * *
18882 GTACACGATTTTCGGATAAAAACTGACCCGAAAAGTTTTTCTCAATTTTTTGCAACAATACTCAG
323 GTTCACGA-TTTCGGCTAAAAACTAACCCGAAAAGTTTTTTTCAATTCTTTGCCACAATACTCAG
* * * *
18947 AAAAAAAAAATATAATTCAATGACAAAAAGATTGACA-CGATTTCCACGCTTCTAAATATCGTTT
387 --AAAAAATATATAATTCAATGACAAAAAGATTGA-AGGGGTTTTCACGCTTCTAAATATCGTTT
** * *
19011 TCCCATTTTTTACGAAATAATTTCTAATGAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAA
449 TCCCATTTTTTATTAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAA
* * * * *
19076 TCCATATATCCAATGTGGCTCAAATTTTGTTCGATGAATATAGATTTTTCAAGGAGTCTTTGCGC
514 TCCATATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTTTTTGCGC
*
19141 CCAAAATCATGCAAAACTGAGTCTGACTCCGG
579 CCAAAATCATGCAAAACTGAGCCTG-CTCCGG
19173 TACACGATTT
Statistics
Matches: 1048, Mismatches: 160, Indels: 100
0.80 0.12 0.08
Matches are distributed among these distances:
637 2 0.00
638 40 0.04
639 2 0.00
640 1 0.00
641 11 0.01
642 34 0.03
645 15 0.01
646 44 0.04
647 127 0.12
648 328 0.31
649 148 0.14
650 40 0.04
651 151 0.14
652 57 0.05
653 3 0.00
654 1 0.00
655 42 0.04
656 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (646 bp):
ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCACAATACTC
AAAAAAAATATACAATTCAACGTCAAAAAGATTAAAAGGTTTTTCAAGTTCTAATATCATTTTTC
CATTTTTTTCCAAATTAATTTCTAATTAAATGAAAACAAGATTCAGATGCTCATAAAAAAAAACC
TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCA
AAATCATGCAAAACTAGAGTCGGGCTCCAGAACGCGTTTTTAGACAAAAACCGTGATGGTTAGTT
CACGATTTCGGCTAAAAACTAACCCGAAAAGTTTTTTTCAATTCTTTGCCACAATACTCAGAAAA
AATATATAATTCAATGACAAAAAGATTGAAGGGGTTTTCACGCTTCTAAATATCGTTTTCCCATT
TTTTATTAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCATAT
ATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTTTTTGCGCCCAAAAT
CATGCAAAACTGAGCCTGCTCCGGAACGCGTTTTTAGCCAAAAAACGTGATGGTGTACACA
Found at i:19806 original size:320 final size:318
Alignment explanation
Indices: 19199--20423 Score: 1237
Period size: 322 Copynumber: 3.8 Consensus size: 318
19189 AACTTTTGCA
* * * * * * *
19199 AAAATTGACCTGAAAAGGTTTTCCTCAATTTTTTGCTACAATACACAAAAAAAAAATTTATAATT
1 AAAACTGACCCGAAAA-TTTTTTCTCAATTTTTTGCTACAATACTC--AGAAAAAATATATAATT
* * * * * * * *
19264 CAACGCC-AAAAGATTTAAAGGTTTTTCATGCTTCTAATATTGGTTTACCATTTTTTTCCAAATT
63 CAATGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATT
* * * * * *
19328 TATTTCTAATTAAATCAAAACAAGATTCAGATTCTCCTAAAAACAAAACCTTAAATCCAATGTGG
127 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGG
* * * * *
19393 CTGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTCTTTCTG-CCAATAACCATGCAAAAC
192 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCCAA-AATCATGCAAAAC
* * * * * * *
19457 -AAAGTCGAGACCCCGAAACGCGTTTTTAGCCATAAATCGTGATGGTTAGTATACGATTTGGGCT
256 TGAA-CCG-GGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * *
19521 AAAACTGAACCGAAAATTTTTATCTCAATTCTTTGCTACAATACTCAGAAAAAATATATAATCCA
1 AAAACTGACCCGAAAATTTTT-TCTCAATTTTTTGCTACAATACTCAGAAAAAATATATAATTCA
* * * * * *
19586 TTGCCAAAAAAAATTGAAGGGGTTTTGACGCTTCTAATATCGTTTTTCAATTTTTTT-GAATTTA
65 ATGCC-AAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAA
* * *
19650 TTTTTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATGCAATGTGGTT
129 TTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCT
* * * *
19715 GAGATTTGGCTACATGAATATAGATATTTCAAGGAGTCCTTCTGCCAAAAATCATGCAAAACTGA
194 GAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCCAAAATCATGCAAAACTGA
*
19780 ACCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACAGGATTTCGGCT
259 ACC-GGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * * * * * * *
19841 AAAAACTGATCCGAAAAGTTCTTTCTCAATTTTTGGCCACAATAGT-AAAAAAAAAATACAAATC
1 -AAAACTGACCCGAAAA-TTTTTTCTCAATTTTTTGCTACAATACTCAGAAAAAATATATAATTC
* * * * * *
19905 AACT-CCAGAAAGATTAAAAGGTTTTTCATGCTTCTAATATCGTTTTTCCCTTTTTTTTATGAAT
64 AA-TGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTT-CCATTTTTTT-CGAAT
* * * * * * *
19969 TAATTTGTAATTAAATGGAAACAAGATT-TGAATACTCGTAAAAACAAAACCTTAAATCCAATTT
126 TAATTTCTAATTAAATCGAAACAAGATTCAG-ATGCTCGTAAAAACAAATCCATAAATCCAATGT
* *
20033 GGTTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAA
190 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCCAAAATCATGCAAAA
* * * * * *
20098 CTGAGCCGGGCTCC-AGAACACGTTTTTAG-AATAAAACCGTGATGGTTAGTACATGATTTCGAC
255 CTGAACCGGGCCCCGA-AACGCGTTTTTAGCCA-AAAACCGTGATGGTTAGTACACGATTTCGGC
20161 T
318 T
* * * * * *
20162 AAAAACTGACCTGAAAAGTTTTTTTTTCAATTGTTTGCCATAATACTCAGAAAAAATTTATAATT
1 -AAAACTGACCCGAAAA--TTTTTTCTCAATTTTTTGCTACAATACTCAGAAAAAATATATAATT
* * * * * * * **
20227 CAATGTCAAAAAGATTGACGCGATTTTCACGCTTCTAAATATTGTTTTCCCATTTTTTACGAAAC
63 CAATGCCAAAAAGATTGAAGGGTTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTCGAATT
* * * * * *
20292 AATTTCTAATGAAATCGAAACAACATTCAAATGTTCGTAAAAACAAATCCATATATCCAATGTGA
127 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGG
* * *
20357 CTCAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGC-CCCCAAAATCATGCAAAAC
192 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCCAAAATCATGCAAAAC
20421 TGA
256 TGA
20424 GTCTGACTCC
Statistics
Matches: 746, Mismatches: 136, Indels: 42
0.81 0.15 0.05
Matches are distributed among these distances:
319 34 0.05
320 208 0.28
321 109 0.15
322 339 0.45
323 46 0.06
324 10 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (318 bp):
AAAACTGACCCGAAAATTTTTTCTCAATTTTTTGCTACAATACTCAGAAAAAATATATAATTCAA
TGCCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATT
TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGA
GATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCCAAAATCATGCAAAACTGAAC
CGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
Found at i:22080 original size:321 final size:320
Alignment explanation
Indices: 20479--22323 Score: 1679
Period size: 321 Copynumber: 5.8 Consensus size: 320
20469 ACTCGAAAAA
* * *
20479 TTTTCCTCAATTTTT-TGCAACAATACACAGAAAAAATTTATAATTCAACGCC-AAAAGATTAAA
1 TTTTTCTCAATTTTTGT-C-ACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAA
* * * * * * *
20542 AGGTTTTTCATGCTTCTAATATTGCTTTACCATTTTTTTCCAAATTTATTTCTAATTAAATCGAA
64 GGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTACAAATTAATTTCTAATTAAATCGAA
* * * * * *
20607 ACAAGATTCAGATTCTCCTAAAAACAAA-CCTTAAATCCAATGTGGCTGAGAATTGATTGGATGA
129 ACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAGATGA
* ** * * ** * * *
20671 TTATAGATATTTCAAGGAGTCTTTATG-TCAATAACCATGCAAAACAAAGTCGAGAC-CCCGAAA
194 ATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AATCATGCAAAACTGAGCCG-GGCTCCAG-AA
* * * * * *
20734 CGCATTTTTAGCGAAAAACCGTGATGGTTGGTATACGATTTGGGCT-AAAACTGAACCG-AAAGT
256 CGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGT
* * * * *
20797 TTTTATCTCAATTCTTTGTCACAATACTCAGAAAGAATATATAATCCAATGCCAAAAAAATTGAA
1 TTTT-TCTCAATT-TTTGTCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAA
* * * * * * *
20862 GGGGTTTTCAGGCTTCTAATATCATTTTTCCATTTTTTT-CGAATTGATTTTTAATTAAATTGAA
64 GGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTACAAATTAATTTCTAATTAAATCGAA
* * * *
20926 ACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATGCAATGTGGTTGAGATATGGCTAGATGA
129 ACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAGATGA
* * * * * *
20991 ATAT-GAATATTTCAAGGAGACTTT-CTGCCAAAAATCATGCATAACTGAACTGGGGC-CCCGAA
194 ATATAG-ATATTTCAAGGAGTCTTTGC-GCCCAAAATCATGCAAAACTGAGC-CGGGCTCCAG-A
* * * * * *
21053 ACGCGTTTTTAGCCAAAAA-C-TG-T-GATCGTACACGATTTCGACTAAAACCTGACCCGAAATG
255 ACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAG
21114 T
320 T
* * * * * * * * * *
21115 TCTCTCTCAATTTTTTTC-CATAGCACTAAAAAAAAATATACAAATCAACTCCAGAAAGATTAAA
1 TTTTTCTCAATTTTTGTCACA-A-TACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAA
* * * ** * * *
21179 AGGTTTTTCATGCTTCTAATATCATTTTTCTTTTTTCTTTTTACGAATTAATTTGTAATTAAATG
64 GGGTTTTTCACGCTTCTAATATCGTTTTTC--CATT-TTTTTACAAATTAATTTCTAATTAAATC
** * * * *
21244 GAAGTAAGATTTAAATGCTCGTAAACACAAA-CCTTAAATCCAATGTGGCTGAGATTTGGTTAGA
126 GAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAGA
* *
21308 TGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAACTAAGCCGGGCTCCAGAA
191 TGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAGCCGGGCTCCAGAA
* * * *
21373 CACGTTTTTAGCATAAAACTGTGATGGTTAGTACATGATTTCGGCTAAAAACTGACCCGAAAAGT
256 CGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAG-
21438 TT
320 -T
* * * * * **** *
21440 TTTTTTTCAATTGTTTGCCATAATACTTAG-AAAAATTTATAATTCAAAATTAAAAAGATTGAAG
1 TTTTTCTCAATT-TTTGTCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAG
* * * *
21504 GGGTTTTCACGTTTCTAAATATCGTTTTCCCATTTTTTTACGAATTAATTTCTAATTAAATCGAA
65 GGTTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTACAAATTAATTTCTAATTAAATCGAA
* ** *
21569 ACAAGATTCAGATGCT-TTAAAAACAAATCCATCTATCCAATGTGGCTGAGATTTGGTTCGATGA
129 ACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAGATGA
* * * * *
21633 ATATAGATATTTCAAGGAGTCTTTGCGCCCAACATCAAGCAAAACAGAG-C---CTTC-TAACGC
194 ATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAGCCGGGCTCCAGAACGC
* ** * * ** ** * * *
21693 -ATTTTAGCCAAAAAAAAGTGATGCACACAATTTGGGCTAAAATTT-TGC-CAAAATTGACCCGA
259 GTTTTTAG-CAAAAAACCGTGATG------GTTAGTAC-ACGATTTCGGCTAAAAACTGACCCGA
21755 AAAGT
316 AAAGT
* * * * *
21760 TCTTCCTCAATTTTTCGTCACAATGCTGAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAA
1 TTTTTCTCAATTTTT-GTCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAG
* * * *
21825 GGTTTTTCAAG-TATCTAATATCATTTTTCCATTTTTTTTTCAAATTAATTTCTAATTAAA-CAA
65 GGTTTTTCACGCT-TCTAATATCGTTTTTCCA-TTTTTTTACAAATTAATTTCTAATTAAATCGA
* *
21888 AACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
128 AACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAGATG
* *
21953 AATATTGATATTTCAAGGAGTCTTTGCGCCCAAAATTATGCAAAACTGAGCCGGGCTCCAGAACG
193 AATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAGCCGGGCTCCAGAACG
* * * ** * **
22018 CCTCTGTAGCAAAAAATTGTGATGGTTAGTACACGATTTCGGATAAAAACTGACAAGAAAAG-
258 CGTTTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGT
* * *
22080 TTTTTCTTAATTTTT-TGCAACAATACTCTAAAAAAAATATATAATTCAACGCCAAAAAGATTGA
1 TTTTTCTCAATTTTTGT-C-ACAATACTC-AGAAAAAATATATAATTCAACGCCAAAAAGATTAA
* * * * * *
22144 CGAGATTTTCACGCTTCTAAATATCGATTTCCCA-TTTTTTACGAAA--AATTTTCTAATGAAAT
63 AGGGTTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTAC-AAATTAA-TTTCTAATTAAAT
* * * *
22206 CGAAACAAGATTCAAATGCTCGTAAAAACAAATCCATACATCCAATGTGGCTCAGATTTGGTTCG
125 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAG
*
22271 ATAAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAG
190 ATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAG
22324 TCTGACTTCG
Statistics
Matches: 1228, Mismatches: 240, Indels: 115
0.78 0.15 0.07
Matches are distributed among these distances:
315 2 0.00
316 27 0.02
317 91 0.07
318 16 0.01
319 118 0.10
320 306 0.25
321 382 0.31
322 148 0.12
323 40 0.03
324 42 0.03
325 28 0.02
326 23 0.02
327 5 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (320 bp):
TTTTTCTCAATTTTTGTCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAGG
GTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTACAAATTAATTTCTAATTAAATCGAAAC
AAGATTCAGATGCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGGTTAGATGAAT
ATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAGCCGGGCTCCAGAACGCGT
TTTTAGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAAGT
Found at i:24216 original size:320 final size:317
Alignment explanation
Indices: 23612--32497 Score: 6901
Period size: 320 Copynumber: 28.0 Consensus size: 317
23602 AAAGATTGAC
* * * * *
23612 CCGAAAAGTTTTTCCTTAATTTTTTGCTACAATACACAGAAAAAATTTATAATTCAACGCC-AAA
1 CCGAAAA-TTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * * *
23676 AGATTAAAGGGTTTTTCATGCTCCTAATATTGTTTTACCATTTTTTTCCAAATTTATTTCTAATT
64 AGATTAAAGGG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTAATTTCTAATT
* * * * * * *
23741 AAATCGAAACAATATTCAGATTCTCTTAAAAACAAAACTTTAAATCCAATATGGCTGCA-AATTG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTG-AGATTTG
* * * ** * * *
23805 ATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAACCATGCAAAACAGAGTCGAGA
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AATCATGCAAAACAGAGCCG-GG
* * * * * * *
23869 CCCCAAAATGCGTTTTAAGCAAAAAACCGTGATGGTTAGTATACGATTTGGGCT-AAAACTGAA
254 CTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * *
23932 CCGAAAATTTTTATCTCGATTCTTTGTCACAATACTCATAAAAAATATATAATCCAATGCCAAAA
1 CCGAAAATTTTT-TCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * *
23997 AAATTAAAGCGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTTATTTTTAATTA
64 AGATTAAAG-GGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTA
* * *
24062 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATGCAATGTGGTTGAGATTTGGC
128 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGGT
* * * * * *
24127 TAGATGAGTATAGATATTTCAAGGAGTCTTTCCGCCAAAAATAATGCAAAACAGAACCGGGGCCC
193 TAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCC-GGGCTC
* *
24192 CGAAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAC
257 CGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * * * *
24253 CCGAAAAGTTCTCTCTCAAATTTTTGCCACAATACTCA-AAAAAATATACAAATCAACT-CCAGA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAA-TGCCAAA
* * *
24316 AAGATTAAAAGGTTTTTCATGCTTCTAATATCGTTTTTCC-TTTTTTTACGAATTAATTTGTAAT
63 AAGATT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTAATTTCTAAT
* * * * * *
24380 TAAATGGAAACACGATTTAGATGCTTGTAAAAACAAAACCT-TAAATCCAATGTGGTTGAGATTT
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGATTT
* * *
24444 GGTTAGATGAATATAGATATTTCAAGGAGACTTTGTGCCCAAAATCATGCAAAACTA-AGCTGGG
190 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAAC-AGAGCCGGG
* * * *
24508 CTCC-AGAACACGTTTTTA-ACATAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAACAGA
254 CTCCGA-AACGCGTTTTTAGCCA-AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
*
24571 C
317 A
* * * * * * * *
24572 CCGAAAAGTGTTTTATTAATTGTTTGCCATAATACTTAGAAAAAATTTATAATTCAATGTCAAAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * *
24637 AGATTGAAGGGGTTTTCACGTTTCTAAATATTG-TTTTCCTATTTTTTTACGAATTAATTACAAA
64 AGATT-AAAGGGTTTTCACGCTTCT-AATATCGTTTTTCC-ATTTTTTT-CGAATTAATTTCTAA
* * * * * *
24701 TTAGATCGAAACAATATTCAGATGCT-TTAAAAACAAATCCATATATCCAATGTGGCTGAAATTT
125 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTT
* ** * * ***
24765 CGTTCCATGAATATTGATATTTCAAGGAGTCTTTGCGCCCAACATCAAAAAAAAAAAACAGAGCC
190 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATC----ATGCAAAACAGAGCC
* *** * * *
24830 -TGCTCCGAAACGCGTTTTTAGCCAAAAA--AAAATGTGATGGTACACAATTTCGGCTAAAATTT
251 GGGCTCCGAAACGCGTTTTTAGCCAAAAACCGTGATG-GTTAGTACACGATTTCGGCTAAAA---
*
24892 TACAAAAATTGAC
312 -AC------TGAA
* * * * *
24905 CCGAAAAGTTCTTCCTCAATTTTTTGTCACAATGCTCTGAAAAAATATATAATTCAACGCCAAAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * *
24970 AGATTAAAGGGTTTTTCAAG-TATCTAATATCGTTTTTCCATTTTTTTTCCAGATTGATTTCTAG
64 AGATTAAAGGG-TTTTCACGCT-TCTAATATCGTTTTTCCA-TTTTTTTCGA-ATTAATTTCTAA
* * *
25034 TTAAATCAAAACAAGGTTCAGATGCTCGTAAAAACAAATCCT-T-AATCCAATGTGGCTGAGATC
125 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CTATAAATCCAATGTGGCTGAGATT
* * * * *
25097 TGGTTAGATGAATATTGATATTTCAAGTACTCTTTGCGCCCAAAATAATGCAAAACTGAGCCGGG
189 TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGG
* * * * * * *
25162 CTCCAAAACGCCTTTGTT-GCC-AAAATCGCGATGGTTAGTACACGATTTCGGATGAAAACTGAC
254 CTCCGAAACGCGTTT-TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
** * *
25225 CCGAAAAGGTTTTCTCAATTTTTTGCAACAATACTCAGAAAAAATACATAATTCAACGCCAAAAA
1 CCGAAAATTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAAAA
* * * * * * *
25290 GATTGACGAGATTTTCACGCTTCTAAATATCGTTTTCCCATTTTTTACGAAAT-ATTTCTAATGA
65 GATTAAAG-GGTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTA
* * * * * *
25354 AATCTAAACAAGATTCAAATGCTCGTAAAAATAAATCCATATATCCAATGTGGCTCAGATTTGGT
128 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGGT
* ** * * * *
25419 TCGATGAATATAGATATTTCAACCAGTTTTTGCGCCTAAAATCATGCAAAACTGAGTCC-GACTC
193 TAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAG-CCGGGCTC
** * * * * *
25483 CGGTACACG-ATTT----------C-----GGCTA--A-A--ATTT-TGC-AAAAATTG-A
257 CGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * * *
25520 CTCGAAAAGCTTTTCCTCAATTTTTTGCTACAATACACAGAAAAAATTTATAATTCAACGCC-AA
1 C-CGAAAA-TTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAA
* * * * * * * *
25584 AAGATTAAAGGGTTTTTGATGTTTCCAATATTGTTTTACCATTTTTTTTCTAAATTTATTTCTAA
63 AAGATTAAAGGG-TTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTC-GAATTAATTTCTAA
** * * * * *
25649 TTAAATCGAATTAAGATTCATATTCTCTTAAAAACAAAACCT-TAAATCCAATGTGGCTGAGAAT
125 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGATT
* * * * ** * * * *
25713 TGATTAGATGATTATAGATAATTCAAGGGGTCTTTATG-CCAATAACCATGCAAAACAAAGTCGA
189 TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AATCATGCAAAACAGAGCCGG
* * * * * *
25777 GATCCCG-AATGCGTTTTTAGCCAAAAACAGTGATGATTAGTACACGATTTGGGCT-AAAACCGA
253 GCT-CCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA
*
25840 G
317 A
* * * * *
25841 CCAAAAATTTTTATCTCAATTCTTTGTCAAAATACTCATAAAAAATATATAATCCAATGCCAAAA
1 CCGAAAATTTTT-TCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* ** * *
25906 AAATTGATGGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTTATTTTTAATTA
64 AGATT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTA
* * * *
25971 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAAATGCAATGTGGTTGAGATTTGGC
128 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGGT
** * * * * *
26036 TAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAACTAAATCGGGGCCC
193 TAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAAC-AGAGCCGGGCTC
* *
26101 CGAAATGCGTTTTTAGCCAAAAAACCGTGATGATTAGTACACGATTTCGGCTAAAAACTGAA
257 CGAAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* ** * * * * *
26163 CCGAAAAGTTCTCCCTCAATTTTTTGCCAAAATACTACA-AAAAAA-ATACAAATCAACT-CTAG
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACT-CAGAAAAAATATATAATTCAA-TGCCAA
* *
26225 AAAGATTAAATGGTTTTTCACGCTTCTAATATCGTTTTTCC-TTATTTTTACGAATTAATTTGTA
62 AAAGATTAAA-GGGTTTTCACGCTTCTAATATCGTTTTTCCATT-TTTTT-CGAATTAATTTCTA
* * *
26289 ATTAAATGGAAACAAGATTTAGATGCTCGTAAAAACAAAACCT-TAAATCCAATGTGGCTGAGAT
124 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGAT
*
26353 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAACTAG-GCCG
188 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAAC-AGAGCCG
* * * * *
26417 GGCTCC-ATAACACGTTTTTA-ACATAAAACCATGATGATTAGTACATGATTTCGGCTAAAAACT
252 GGCTCCGA-AACGCGTTTTTAGCCA-AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
*
26480 GAC
315 GAA
* * * * * *
26483 CCGAAAATTTTTTTTTAATTATTTGCCATAATACTCAAAAAAAAT-TATAATTCAATGTCAAAAA
1 CCGAAAATTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAAA
* * * *
26547 GATTGAAGGGGTTTTCACGTTTCTAAATATC-ATTTTCCTATTTTTTTACGAATTAATTACTAAT
65 GATT-AAAGGGTTTTCACGCTTCT-AATATCGTTTTTCC-ATTTTTTT-CGAATTAATTTCTAAT
* *
26611 TAAATCGAAACAAGATTCAGATGCT-TTAAAAACAAATCTATACATCCAATGTGGCTGAGATTTG
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTG
** * * * * *
26675 GTTCCATGAATATTGATATTTCAAGGAGTCTTTGCGCCCAACATCAAGAAAAACAGAGCC-TGCT
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGCT
* **** * * * * *
26739 CC-AGAACACGTTTTTAG-CAAAAA-AAAAATGTGATGGTACACAATTTGGGGTAAAATTTTGCA
256 CCGA-AACGCGTTTTTAGCCAAAAACCGTGATG-GTTAGTACACGATTT-CGG-------CT--A
* *
26801 AAAAATGAC
309 AAAACTGAA
* * * *
26810 CCGAAAAGTTTTTCCTCAATTTTTTGTCACAATGCTCTGAAAAAATATATAATTCAACGCCAAAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * *
26875 AGATTAAAGGGTTTTTCAAG-TATCTAATATCGTTTTTCCATTTTTTTTCCAAATTAATTTCTAG
64 AGATTAAAGGG-TTTTCACGCT-TCTAATATCGTTTTTCCA-TTTTTTT-CGAATTAATTTCTAA
* *
26939 TTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCT-TAAATCCAATATGGCTGAGATT
125 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CTATAAATCCAATGTGGCTGAGATT
* * * *
27003 TGGTTAGATGAATATTGATATTTCAAGGAATCTTTGCGCCCAAAATGATGCAAAACTGAGCCGGG
189 TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGG
** * * * * *
27068 CT-TTAGGACGCCTTTGTAGCCAAAAATCGTGATGGTTAGT--AC-A--TCGGATAAAAACTG-A
254 CTCCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* *
27126 -C-AAAGA--TTTTCTCAATTTTTTGCAACAATACTCCGAAAAAATATATAATTCAACGCCAAAA
1 CCGAAA-ATTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * * * *
27187 AGATTGACGAGATTTTCACGCTTCTAAATATCGTTTTCCCATTTTTTACGAAATAATTTCTAATG
64 AGATTAAAG-GGTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATT
* * * ** *
27252 AAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCATATATCCAATGTGATTCAGATTTGG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGG
* * **
27317 TTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCCAAAATC-TGCAAAACTTA-----G-TC
192 TTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGCTC
* * ** * ** * *
27375 TG--ACTC--TGGTA--C----A-C--GAT--TTCG-ACTAAAATTT-TGC-AAAAA-TCGAC
257 CGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC-ACGATTTCGGCTAAAAACT-GAA
* * * * *
27419 CCGAAAAGTTTTTCCTCAATTTTTTGATACAATACACAGAAAAAATTTATAATTCAACGCC-AAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
** * * * *
27483 AGATTAAAGAATTTTTCATGCTTCTAATATTGTTTTACCA-TTTTTTCGAAATTTATTTCTAATT
64 AGATTAAAG-GGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCG-AATTAATTTCTAATT
* * * *
27547 AAATCGAAACAAGATTCAGATTCTCTTAAAAACAAAACCT-TAAATCCAATGTGGCTGAGAATTG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGATTTG
* * * ** * * *
27611 ATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAACCATGCAAAACAGAGTCGAGA
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AATCATGCAAAACAGAGCCG-GG
* * * * *
27675 CCCCGAAACGCGTTTTTAGCAAAAAAACCATGATGGTTAGTATACGATTTGGGCT-AAAACTGAA
254 CTCCGAAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * *
27739 CCGAAAATTTTTATCTCAATTCTTTGTCACAATACTTAGAAAAAATATATAATCCAATGCCAAAA
1 CCGAAAATTTTT-TCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * *
27804 AAATTGAAGGGGTTTTCACGCTTCTAATATCGTTTATCCATTTTTTTCGAATTTATTTTTAATTA
64 AGATT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTA
* * * *
27869 AATCGAAACAAGATTTAGATGCTCGAAAAAACAAATCTATAAATGCAATGTGGTTGAGATTTGGT
128 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGGT
* * * * * * * *
27934 TAGATGAGTACAGATATTTCAAGGACTCTTT-CTGCCAAAAATCATGCAAAACTGAATCGGGGCG
193 TAGATGAATATAGATATTTCAAGGAGTCTTTGC-GCCCAAAATCATGCAAAACAG-AGCCGGGCT
* *
27998 CGGAAACGCGTTTTTAGCCAAAAAACCGTGA----T-G----CGATTTCGGCTAAAAACTGAT
256 CCGAAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * * *
28052 CCGAAAAGTTCTCTCTCAATTTTTTGCAACAATACTCA-AAGAAAATATACAAATCAACT-CCAG
1 CCGAAAA-TTTTTTCTCAATTTTTTGC-ACAATACTCAGAA-AAAATATATAATTCAA-TGCCAA
* * *
28115 AAAGATTAAAAGGTTTTTCACGCTTCTAATATCGTTTTTCCTATTTTTTACGAATTAATTTTTAA
62 AAAGATT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTCC-ATTTTTTTCGAATTAATTTCTAA
* * * *
28180 TTAAATCGAAACAAGATTCAGATGCT-TTAAAAACAAATCCATATATCCAATGTGGTTGAGATTT
125 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTT
** * * * *
28244 GGTTCCATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAACATCAAGAAAAACAGAGCC-TGC
190 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGC
* *** ** *
28308 TCCGGATTTCGTTTTTAGCCAATAAATTGTGATGG-TA-TACA--ATTTTGGCTAAAATTATGCA
255 TCCGAAACGCGTTTTTAGCCAA-AAACCGTGATGGTTAGTACACGATTTCGGCTAAAA--A--C-
*
28369 AAAATTGAC
314 -----TGAA
* * * * * *
28378 CCGAAAAGTTCTTCCTCAATTTTTTGTCTCAATGCTCTGAAAAAATATATAATTCAACGCCAAAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * *
28443 AGATTAAAGGGTTTTTCAAG-TACCTAATACCGTTTTTCCA---------AATTAATTTCTAGTT
64 AGATTAAAGGG-TTTTCACGCT-TCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATT
* *
28498 AAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCT-TAAATCCAATGTGGCCGAGATTTG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CTATAAATCCAATGTGGCTGAGATTTG
* * * *
28562 GTTAGATGAATATTGATATTTCAAGGAGTCTTTGCGCCCAAAATAATGCAAAACTGAGCCAGGCT
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGCT
* * * * * * *
28627 CC-AGAACGCCTTTGTAGCCAAAAATCGCGATGGTTAGTACACGATTTCGGATGAAAACT-TA
256 CCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * *
28688 CTCGAAAAGTTTTTCTCAATTTTTTGCAACAATACTCAGAAAAAATATATAACTCAACGCCAAAA
1 C-CGAAAATTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * * * * *
28753 AGACTGACGAGATTTTCACGCTTCTAAATATCGTTTTCCCATTTTTTACGAAATAATTTCTAATG
64 AGATTAAAG-GGTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATT
* * * * * *
28818 AAATCGAAACAAGATTCAAATGCACGTAAAAATAAATCCATATATCCAATGTGGCTCAGATTTGG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGG
* * * * * *
28883 TTCGATGAATATAGCTATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACTGAGTCTGACTC
192 TTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGCTC
** * * * * * *
28948 CGGTACACG-ATTT----------C-----GGCTA--A-A--ATTT-TGC-AAAAATTGAC
257 CGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * *
28986 CCGAAAAGTTTTTCCTCAATTTTTTGCTACAATACACAGAAAAAATTTATAATTCAACGCC-AAA
1 CCGAAAA-TTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * * *
29050 AGATTAAAGGGTTTTTCATGCTTCTAATTTTGTTTTACCATTTTTTTCCAAATTTATTTCTAATT
64 AGATTAAAGGG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTAATTTCTAATT
* * * *
29115 AAATCGAAACAAGATTCAGATTCTCTTAAAAACAAAACCT-TAAATCCAATGTGGCTGAGAATTG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGATTTG
* * * ** * * ** *
29179 ATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAACCATGCAAAACAGAGTCAAGA
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AATCATGCAAAACAGAGCCGGGC
* * * * *
29243 TCCCGAAACGCGTTTTTAGCCAAAAATCGTGACGGTTAGTATACGATTTGGGCTAAAATC-GAA
255 T-CCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * *
29306 CCGAAAATTTTTATCTCAATTCTTTGTCAAAATACTCATAAAAAATATATAATCCAATGCCAAAA
1 CCGAAAATTTTT-TCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCC-AAA
* * ** * * *
29371 AAAAGTGAGGGGGTTTTCACGCTTCTAATATCTTTTTTCCATTTTTTTCGAATTGATTTTTAATT
63 AAGA-TTAAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATT
* * * *
29436 AAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCATAAATGC-A--TGGTTGAGATTTGG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGG
* ** * *
29498 CTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAACTA-AACCGAGGC
192 TTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAAC-AGAGCCG-GGC
* * *
29562 CCCGAAATGCGTTTTTAGCCAAAAACCGTGATGATTAGTACACGATTTCGGCTAAAAACTGAA
255 TCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * ** * * * *
29625 CCGAATAGTTCTCCCTCAATTTTTTGCCCAAATACT-A-ATAAAAATATACAAATCAACT-CCAG
1 CCGAA-AATTTTTTCTCAATTTTTTGCAC-AATACTCAGA-AAAAATATATAATTCAA-TGCCAA
* * * *
29687 AAAGATTAAAAGGTTTTTCATGCTTCTAATATCGTTTTTCCTTTTTTTATC-AATTAATTTGTAA
62 AAAGATT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT-TCGAATTAATTTCTAA
* * * * *
29751 TTAAATGGAAACAAGATTTAGATGCTCGTAAAAACAAAACCT-TAAACCCAATGTGGTTGAGATT
125 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGATT
* * * * *
29815 TGATTAGATGAATAT-GAATATTTCAAGGAGTCTTTGTGCCGAAAATCATGCAAAATTA-AGCTG
189 TGGTTAGATGAATATAG-ATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAA-CAGAGCCG
* * ** * * * *
29878 GGCTCCCG-AACACGTTTTTAACTTAAAACCGTAATGGTTAGTAAATGATTTCGGCTAAAAATTG
252 GGCT-CCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTG
*
29942 AC
316 AA
* * * * *
29944 CCGAAAAGTTTTTTTTTCAATTGTTTGTCATAATACTCAGCAAAAAAAATTATAATTCAATGTCA
1 CCGAAAA--TTTTTTCTCAATTTTTTG-CACAATACTCAG-AAAAAATA-TATAATTCAATGCCA
* * * *
30009 AAAAGATTGAAGGGATTTTCATGTTTCTAAATATCGTTTTCCCATTTTTTTACGAATTAATTAT-
61 AAAAGATTAAAGGG-TTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTT-CGAATTAATT-TC
* * *
30073 TAATTAAATCGAAACAAGATTCAGATGCT-TTAAAAACAAATCCATATATCCAATGTGGCTGAGA
122 TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGA
** * * *
30137 TTTGGTTCCATGAATATAGATATTTCAAGGAGCCTTTGCGCCCAACATCAAGCAAAACAGAGCC-
187 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCG
* * * * * * * *
30201 TGCTCTGGAACGCGTTTTTAGCTAAAAAAACGTGA---AT-GTACACAATTTAGGCTAAAATTTT
252 GGCTCCGAAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACGATTTCGGC--------T
* *
30262 GCAAAAATTGAC
308 --AAAAACTGAA
* * ** *
30274 CCGAAAAGTTCTTCCTCAATTTTTTGCCACAACCCTCAGAAAAAATATATAGTTC-ATCGCCAAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAAT-GCCAAA
* * * * *
30338 AAGATTAAATGGTTTTTCAAG-TATCTAATATCGTTTTTCCATTTTTTTTCCAAATTAATTCCCA
63 AAGATTAAA-GGGTTTTCACGCT-TCTAATATCGTTTTTCCA-TTTTTTT-CGAATTAATTTCTA
* * * *
30402 GTTAAATCAAAACAATATTCAGATGCTCGTAAAAACAAATCCT-TAAATCCAATATGGCTGAGAT
124 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CTATAAATCCAATGTGGCTGAGAT
* * * * * *
30466 TTAGTTAGATGAATATTGATATTTCAAAGAGTCTTTGCACCCAAAATAATGCAAAACTGAGCCAA
188 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCC--
* * * *
30531 GGGC-CC-AGAACGCCTTTGTAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGATAAAAACT
251 GGGCTCCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
30594 G-A
315 GAA
*
30596 -CAAAAATAGTTTTTCTCAATTTTTTGCAACAATACTCAGAAAAAATATATAATTCAATGCCAAA
1 CCGAAAAT--TTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAA
* * * * * * *
30660 AAGATTGACGAGATTTTCACGCTTCTAAATATCGATTTCCCATTTTTTACGAAATAATTTCTAAT
63 AAGATTAAAG-GGTTTTCACGCTTCT-AATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAAT
* * * * *
30725 GAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCATATATCCAATGTAGC-GCAGATTT
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTG-AGATTT
* * * * * * *
30789 GGTTCGATGAATATAGATATTTCAAGAAGTCTTTGCGCAC-AAATCATGCAAAACTGAGTCTGAC
190 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGC
** * * * * * *
30853 TCCGGTACACG-ATTT----------C-----GGCTA--A-A--ATTT-TGC-AAAAATTGAC
255 TCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * *
30893 CCGAAAAGTTTTTCCTCAATTTTTTGCTACAATACACAGAAAAAATTTATAATTCAACGCC-AAA
1 CCGAAAA-TTTTTTCTCAATTTTTTGC-ACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * * *
30957 AGATTAAAGGGTTTTTCATGCTTCTAATATTGTTTTACCATTTTTTTCCAAATTTATTTCTAATT
64 AGATTAAAGGG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT-CGAATTAATTTCTAATT
** * * *
31022 AAATCGAAACAAGATTCAGATTTTCTTAAAAACAAAACCT-TAAATCCAATGTGGCTGAGAATTG
127 AAATCGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGATTTG
* * * ** * * *
31086 ATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAACCATGCAAAACAGAGTCGAGA
191 GTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAA-AATCATGCAAAACAGAGCCG-GG
** * * * * *
31150 C-CCGAAACGCGTTTTTAGTAAAAAAACCATGAAGGTTAGTATACGATTTGGGCT-AAAACTGTA
254 CTCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * *
31213 CCGAAAATTTTTATCTCAA----TT---C--T--T-TGAAAAACTATATAATCCAATGCCAAAAA
1 CCGAAAATTTTT-TCTCAATTTTTTGCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAA
* * *
31266 -ATTTGAAGGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTTATTTTTAATTA
65 GA-TT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTA
* * * *
31330 AATTGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATGCAATGTGGTTGAGATTTGGC
128 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGGT
* * * * * *
31395 TAGATGAATATAGATATTTCAAGGACTCTTT-CTGCCAAAAATCATGCAAAACTGAATCGGGGCC
193 TAGATGAATATAGATATTTCAAGGAGTCTTTGC-GCCCAAAATCATGCAAAACAG-AGCCGGGCT
* * *
31459 CCGAAACGTGTTTTTAGCCAAAAACCGTGA-----CGTACACGATTTCGGCTAAAAACTGAC
256 CCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
* * * * * * *
31516 CCGAAAAGTTCTCTCTCAATTTTTTGCCACAATACTTAAAAAAAATATACAAATCAACT-CCAGA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAA-TGCCAAA
* * * ** *
31580 AATATTAAAAGGTTTTTCATGCTTCTAATATCGTTTTTCGTTTTTTTTTACGAATTAATTTGTAA
63 AAGATT-AAAGGGTTTTCACGCTTCTAATATCGTTTTTC-CATTTTTTT-CGAATTAATTTCTAA
* * * *
31645 TTAAATGGAAACAAAAATTTAGATGCTCGTAAAAACAAAACCT-TAAATCCAATGTGGCTGAGAT
125 TTAAATCGAAAC-AAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATCCAATGTGGCTGAGAT
* *
31709 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAACTA-AGTCG
188 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAAC-AGAGCCG
* * * *
31773 GACTCC-AGAACACGTTTTTA-ACATAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAACT
252 GGCTCCGA-AACGCGTTTTTAGCCA-AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
31836 G-A
315 GAA
* * * * * *
31838 CCTGAAATGTTTTTTTTTCAATTGTTTGCCATAATACTCAGAAAAAATTTATAATTCAATGTCAA
1 CC-GAAA--ATTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAA
* * * * * *
31903 AAAGATTGAAGGGGTTTTCACGTTTCAAAATATCATTTTCCCATTTTTTTACCAATTAATTTCTA
62 AAAGATT-AAAGGGTTTTCACGCTTC-TAATATCGTTTTTCCATTTTTTT-CGAATTAATTTCTA
* * * * * *
31968 ATTAAATCGAAACAAGATTTAGATGCT-TTAAAAACAAATCCATATATTCAATGTGGTTGAGATT
124 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATT
** * * * * * *
32032 TGGTTCCATGAATATAAATATTTGAAGGAGTCTTTGCGCCCAACATCAAGCAAATCAGAGCC-TG
189 TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGG
* ***** * * * *
32096 CTCCGGAACGCGTTTTTAG-CAAAAAAAAAAATGTGATGGTACACAATTTGGGCTAAAATTTTGT
254 CTCCGAAACGCGTTTTTAGCCAAAAACCGTGATG-GTTAGTACACGATTTCGGC----------T
* *
32160 AAAAATTGAC
308 AAAAACTGAA
* * * **
32170 CCGAAAAGTTCTTCCTCAATTTTTTGTCACAATGCTCAGAAAAAATATATAATTCAACACCAAAA
1 CCGAAAA-TTTTTTCTCAATTTTTTG-CACAATACTCAGAAAAAATATATAATTCAATGCCAAAA
* * * *
32235 AGATTAAAAGGTTTTTCAAG-TATCTAATATCGTTTTTCCATATTTTTCCAAATTAATTTCTAAT
64 AGATT-AAAGGGTTTTCACGCT-TCTAATATCGTTTTTCCAT-TTTTTTCGAATTAATTTCTAAT
* * *
32299 TAAATCAAAACAAGATTCAGATGCACGTAAAAACAAATACT-TAAATCCAATGTGGCTAAGATTT
126 TAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CTATAAATCCAATGTGGCTGAGATTT
* * * * *
32363 GGTTAGATGAATATTGATATTTCAAGGAGTCTTTGCGCCCAAAATAATGCGAAACTGAGCCAGGC
190 GGTTAGATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGC
* * * * * * *
32428 TTC-AGAACGCCTTTGTAGCCAAAAACCATGATGGTTAGTATATGATTTCGGATAAAAACTG-A
255 TCCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
32490 CCTGAAAA
1 CC-GAAAA
32498 GTTATATATA
Statistics
Matches: 6831, Mismatches: 1265, Indels: 939
0.76 0.14 0.10
Matches are distributed among these distances:
289 3 0.00
291 5 0.00
292 7 0.00
293 2 0.00
294 15 0.00
295 145 0.02
296 218 0.03
297 318 0.05
298 180 0.03
299 18 0.00
300 6 0.00
301 3 0.00
302 18 0.00
303 30 0.00
304 8 0.00
305 5 0.00
306 5 0.00
307 144 0.02
308 61 0.01
309 9 0.00
310 78 0.01
311 154 0.02
312 89 0.01
313 183 0.03
314 67 0.01
315 4 0.00
316 113 0.02
317 268 0.04
318 328 0.05
319 661 0.10
320 1031 0.15
321 684 0.10
322 426 0.06
323 149 0.02
324 216 0.03
325 68 0.01
326 102 0.01
327 93 0.01
328 134 0.02
329 183 0.03
330 302 0.04
331 63 0.01
332 38 0.01
333 184 0.03
334 12 0.00
335 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (317 bp):
CCGAAAATTTTTTCTCAATTTTTTGCACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAG
ATTAAAGGGTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCGAATTAATTTCTAATTAAAT
CGAAACAAGATTCAGATGCTCGTAAAAACAAATCTATAAATCCAATGTGGCTGAGATTTGGTTAG
ATGAATATAGATATTTCAAGGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGGCTCCGAA
ACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAA
Found at i:29937 original size:319 final size:321
Alignment explanation
Indices: 28976--32500 Score: 2853
Period size: 321 Copynumber: 11.1 Consensus size: 321
28966 AAAATTTTGC
* * * * * *
28976 AAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTACAATACACAGAAAAAATTTATAATTC
1 AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
* * * * * * *
29041 AACGCC-AAAAGATTAAAGGGTTTTTCATGCTTCTAATTTTGTTTTACCATTTTTTTCCAAATTT
66 AACTCCAAAAAGATTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTTCGAATTA
* *
29105 ATTTCTAATTAAATCGAAACAAGATTCAGATTCTCTTAAAAACAAAACCTTAAATCCAATGTGGC
131 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGTGGC
* * * * * *
29170 TGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAACCATGCAAAAC-
196 TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAA-AATCATGCAAAACT
** * * * * *
29233 AGAG-TCAAGATCCCGAAACGCGTTTTTAGCCAAAAATCGTGACGGTTAGTATACGATTTGGGCT
260 A-AGCT-GGGCTCCCG-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * * * *
29297 AAAATC-GAACCGAAAA-TTTTTATCTCAATTCTTTGTCAAAATACTCATAAAAAATATATAATC
1 AAAAACTGAACCGAAAAGTTTTT-TCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* * * * * * *
29360 CAA-TGCCAAAAAAAAGTGAGGGGGTTTTCACGCTTCTAATATCTTTTTTCCA-TTTTTTTCGAA
65 CAACT-CC-AAAAAGATTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTTCGAA
* * * * * *
29423 TTGATTTTTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCATAAATGC-A--T
128 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGT
* * * *
29485 GGTTGAGATTTGGCTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAA
193 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAA
* * * *
29550 CTAAACCGAGGC-CCCGAAATGCGTTTTTAGCCAAAAACCGTGATGATTAGTACACGATTTCGGC
258 CTAAGCTG-GGCTCCCG-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGC
29614 T
321 T
* * ** * *
29615 AAAAACTGAACCGAATAGTTCTCCCTCAATTTTTTGCC-CAAATACT-A-ATAAAAATATACAAA
1 AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCAC-AATACTCAGA-AAAAATATATAAT
* *
29677 TCAACTCCAGAAAGATTAAAAGGTTTTTCATGCTTCTAATATCGTTTTTCC-TTTTTTTATC-AA
64 TCAACTCCAAAAAGATTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTT-TCGAA
* * * *
29740 TTAATTTGTAATTAAATGGAAACAAGATTTAGATGCTCGTAAAAACAAAACCTTAAACCCAATGT
128 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGT
* * *
29805 GGTTGAGATTTGATTAGATGAATAT-GAATATTTCAAGGAGTCTTTGTGCCGAAAATCATGCAAA
193 GGCTGAGATTTGGTTAGATGAATATAG-ATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAA
* * * ** * * *
29869 ATTAAGCTGGGCTCCCGAACACGTTTTTAACTTAAAACCGTAATGGTTAGTAAATGATTTCGGCT
257 ACTAAGCTGGGCTCCCGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * * * * *
29934 AAAAATTGACCCGAAAAGTTTTTTTTTCAATTGTTTGTCATAATACTCAGCAAAAAAAATTATAA
1 AAAAACTGAACCGAAAAG-TTTTTTCTCAATTTTTTGCCACAATACTCAG-AAAAAATA-TATAA
* * * * * *
29999 TTCAA-TGTCAAAAAGATTGAAGGGATTTTCATGTTTCTAAATATCGTTTTCCCATTTTTTTACG
63 TTCAACT-CCAAAAAGATTAAAGGGTTTTTCATGCTTCT-AATATCGTTTTTCCATTTTTTTTCG
* * * *
30063 AATTAATTAT-TAATTAAATCGAAACAAGATTCAGATGCT-TTAAAAACAAATCCATATATCCAA
126 AATTAATT-TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAA
** * * * *
30126 TGTGGCTGAGATTTGGTTCCATGAATATAGATATTTCAAGGAGCCTTTGCGCCCAACATCAAGCA
190 TGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCA
** * * * *
30191 AAAC-AGAGCCT--GCTCTGGAACGCGTTTTTAGCTAAAAAAACGTGA---AT-GTACACAATTT
255 AAACTA-AG-CTGGGCTCCCGAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACGATTT
*
30249 AGGCTAAAATTTT
317 CGGC--------T
* * * * ** *
30262 GCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCACAACCCTCAGAAAAAATATATAGT
1 --AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAAT
* * * * *
30327 TCATCGCCAAAAAGATTAAATGGTTTTTCAAG-TATCTAATATCGTTTTTCCATTTTTTTTCCAA
64 TCAACTCCAAAAAGATTAAAGGGTTTTTCATGCT-TCTAATATCGTTTTTCCATTTTTTTT-CGA
* * * * * * *
30391 ATTAATTCCCAGTTAAATCAAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATA
127 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATG
* * * ** *
30456 TGGCTGAGATTTAGTTAGATGAATATTGATATTTCAAAGAGTCTTTGCACCCAAAATAATGCAAA
192 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAA
* * * * * *
30521 ACTGAGCCAAGGGC-CCAGAACGCCTTTGTAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG
257 ACTAAG-C-TGGGCTCCCGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
*
30585 AT
320 CT
** *
30587 AAAAACTG-ACAAAAATAG-TTTTTCTCAATTTTTTGCAACAATACTCAGAAAAAATATATAATT
1 AAAAACTGAACCGAAA-AGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* * * * * * * *
30650 CAA-TGCCAAAAAGATTGACGAGATTTTCACGCTTCTAAATATCGATTTCCCA-TTTTTTACGAA
65 CAACT-CCAAAAAGATTAAAGGGTTTTTCATGCTTCT-AATATCGTTTTTCCATTTTTTTTCGAA
* * * * * *
30713 ATAATTTCTAATGAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCATATATCCAATGT
128 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGT
* * * * *
30778 AGC-GCAGATTTGGTTCGATGAATATAGATATTTCAAGAAGTCTTTGCGCAC-AAATCATGCAAA
193 GGCTG-AGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAA
* * * * * * * *
30841 ACTGAGTCT-GACTCCGGTACACG-ATTT----------C-----GGCTA--A-A--ATTT-TGC
257 ACTAAG-CTGGGCTCCCGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGC
30883 -
321 T
* * * * * *
30883 AAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTACAATACACAGAAAAAATTTATAATTC
1 AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
* * * * * *
30948 AACGCC-AAAAGATTAAAGGGTTTTTCATGCTTCTAATATTGTTTTACCATTTTTTTCCAAATTT
66 AACTCCAAAAAGATTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTTCGAATTA
** *
31012 ATTTCTAATTAAATCGAAACAAGATTCAGATTTTCTTAAAAACAAAACCTTAAATCCAATGTGGC
131 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGTGGC
* * * * * *
31077 TGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTCTTTATG-CCAATAACCATGCAAAAC-
196 TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAA-AATCATGCAAAACT
* * ** * * * *
31140 AGAG-TCGAG-ACCCGAAACGCGTTTTTAGTAAAAAAACCATGAAGGTTAGTATACGATTTGGGC
260 A-AGCT-GGGCTCCCG-AACGCGTTTTTAG-CCAAAAACCGTGATGGTTAGTACACGATTTCGGC
31203 T
321 T
* * * *
31204 -AAAACTGTACCGAAAA-TTTTTATCTCAA----TT----C--T--T-TGAAAAACTATATAATC
1 AAAAACTGAACCGAAAAGTTTTT-TCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* * *
31254 CAA-TGCCAAAAA-ATTTGAAGGGGTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTCGAA
65 CAACT-CCAAAAAGA-TTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTTCGAA
* * * * *
31316 TTTATTTTTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAAC-AAATCTATAAATGCAATG
128 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCT-TAAATCCAATG
* * * * *
31380 TGGTTGAGATTTGGCTAGATGAATATAGATATTTCAAGGACTCTTTCTGCCAAAAATCATGCAAA
192 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAA
* * * *
31445 ACTGAATCGGGGC-CCCGAAACGTGTTTTTAGCCAAAAACCGTGA-----CGTACACGATTTCGG
257 ACT-AAGCTGGGCTCCCG-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
31504 CT
320 CT
* * * * * * *
31506 AAAAACTGACCCGAAAAGTTCTCTCTCAATTTTTTGCCACAATACTTAAAAAAAATATACAAATC
1 AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
* * * **
31571 AACTCCAGAAATATTAAAAGGTTTTTCATGCTTCTAATATCGTTTTTCGTTTTTTTTTACGAATT
66 AACTCCAAAAAGATTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTT-CGAATT
* * * *
31636 AATTTGTAATTAAATGGAAACAAAAATTTAGATGCTCGTAAAAACAAAACCTTAAATCCAATGTG
130 AATTTCTAATTAAATCGAAAC-AAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGTG
31701 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAAC
194 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAAC
* * * * *
31766 TAAG-TCGGACTCCAGAACACGTTTTTA-ACATAAAACCGTGATGGTTAGTACATGATTTCGGCT
259 TAAGCT-GGGCTCCCGAACGCGTTTTTAGCCA-AAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * * *
31829 AAAAACTG-ACCTGAAATGTTTTTTTTTCAATTGTTTGCCATAATACTCAGAAAAAATTTATAAT
1 AAAAACTGAACC-GAAAAG-TTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAAT
* * * * * * * * * *
31893 TCAA-TGTCAAAAAGATTGAAGGGGTTTTCACGTTTCAAAATATCATTTTCCCATTTTTTTACCA
64 TCAACT-CCAAAAAGATTAAAGGGTTTTTCATGCTTC-TAATATCGTTTTTCCATTTTTTTTCGA
* * * * * *
31957 ATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCT-TTAAAAACAAATCCATATATTCAATG
127 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATG
* ** * * * * *
32021 TGGTTGAGATTTGGTTCCATGAATATAAATATTTGAAGGAGTCTTTGCGCCCAACATCAAGCAAA
192 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAA
* * ***** * * * *
32086 TC-AGAGCCT--GCTCCGGAACGCGTTTTTAG-CAAAAAAAAAAATGTGATGGTACACAATTTGG
257 ACTA-AG-CTGGGCTCCCGAACGCGTTTTTAGCCAAAAACCGTGATG-GTTAGTACACGATTTCG
32147 GCTAAAATTTTGT
319 GC----------T
* * * * * *
32160 AAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGTCACAATGCTCAGAAAAAATATATAATTC
1 AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
* * * * * *
32225 AACACCAAAAAGATTAAAAGGTTTTTCAAG-TATCTAATATCGTTTTTCCATATTTTTCCAAATT
66 AACTCCAAAAAGATTAAAGGGTTTTTCATGCT-TCTAATATCGTTTTTCCATTTTTTTTCGAATT
* *
32289 AATTTCTAATTAAATCAAAACAAGATTCAGATGCACGTAAAAACAAATA-CTTAAATCCAATGTG
130 AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA-ACCTTAAATCCAATGTG
* * * * *
32353 GCTAAGATTTGGTTAGATGAATATTGATATTTCAAGGAGTCTTTGCGCCCAAAATAATGCGAAAC
194 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAAC
* ** * * * * * * * *
32418 TGAGCCAGGCTTCAGAACGCCTTTGTAGCCAAAAACCATGATGGTTAGTATATGATTTCGGAT
259 TAAGCTGGGCTCCCGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
32481 AAAAACTG-ACCTGAAAAGTT
1 AAAAACTGAACC-GAAAAGTT
32501 ATATATATAT
Statistics
Matches: 2536, Mismatches: 501, Indels: 334
0.75 0.15 0.10
Matches are distributed among these distances:
295 14 0.01
296 138 0.05
297 70 0.03
298 7 0.00
300 1 0.00
301 1 0.00
302 14 0.01
303 24 0.01
304 3 0.00
306 5 0.00
307 144 0.06
308 60 0.02
309 2 0.00
310 1 0.00
311 1 0.00
312 1 0.00
313 1 0.00
314 4 0.00
315 1 0.00
316 54 0.02
317 108 0.04
318 181 0.07
319 208 0.08
320 203 0.08
321 214 0.08
322 197 0.08
323 117 0.05
324 186 0.07
325 64 0.03
326 23 0.01
327 66 0.03
328 91 0.04
329 91 0.04
330 173 0.07
331 43 0.02
332 13 0.01
333 12 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32
Consensus pattern (321 bp):
AAAAACTGAACCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
AACTCCAAAAAGATTAAAGGGTTTTTCATGCTTCTAATATCGTTTTTCCATTTTTTTTCGAATTA
ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAACCTTAAATCCAATGTGGC
TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCCCAAAATCATGCAAAACTA
AGCTGGGCTCCCGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
Found at i:30466 original size:652 final size:647
Alignment explanation
Indices: 28950--32500 Score: 3635
Period size: 652 Copynumber: 5.6 Consensus size: 647
28940 TCTGACTCCG
* *
28950 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTA
1 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCA
* * * *
29015 CAATACACAGAAAAAATTTATAATTCAACGCC-AAAAGATTAAAGGGTTTTTCATGCTTCTAATT
66 CAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCTTCTAATA
* * * * *
29079 TTGTTTTACCATTTTTTTCCAAATTTATTTCTAATTAAATCGAAACAAGATTCAGATTCTCTTAA
131 TCGTTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAA
* * *
29144 AAACAAAACCTTAAATCCAATGTGGCTGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTC
196 AAACAAAACCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTC
* * ** * * * *
29209 TTTATG-CCAATAACCATGCAAAAC-AGAGTCAAGATCCCGAAACGCGTTTTTAGCCAAAAATCG
261 TTTGTGCCCAA-AATCATGCAAAACTA-AGTCGGGCTCCAG-AACGCGTTTTTAACCAAAAACCG
* * * * * *
29272 TGACGGTTAGTATACGATTTGGGCTAAAATC-GAACCGAAAA-TTTTTATCTCAATTCTTTGTCA
323 TGATGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTCTCAATTGTTTGTCA
* * * * * *
29335 AAATACTCATAAAAAATATATAATCCAATGCCAAAAAAAAGTGAGGGGGTTTTCACGCTTCT-AA
388 TAATACTCAGAAAAAATATATAATTCAATGCC-AAAAAGATTGAAGGGGTTTTCACGCTTCTAAA
* * * *
29399 TATCTTTTTTCCATTTTTTT-CGAATTGATTTTTAATTAAATCGAAACAAGATTTAGATGCTCGT
452 TATCGTTTTCCCATTTTTTTACGAATT-AATTTTAATTAAATCGAAACAAGATTCAGATGCTCGT
* * * *
29463 AAAAACAAATCCATAAATGC-A--TGGTTGAGATTTGGCTAGATGAATATAGATATTTCAAGGAG
516 AAAAACAAATCCATATATCCAATGTGGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG
** * * * * * * *
29525 TCTTTATGCCAAAAATCATGCAAAACTA-AACCGAGGCCCCGAAATGCGTTTTTAGCCAAAAACC
581 TCTTTGCGCCCAAAATCATGCAAAAC-AGAGCC--GGCTCCGGAACGCGTTTTTAGCAAAAAAAC
29589 GTGATGATT
643 --G-TGA-T
* * * *
29598 AGTACACGATTTCGGC--------T--AAAAACTGAACCGAATAGTTCTCCCTCAATTTTTTGCC
1 -GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCC
* * * *
29653 -CAAATACT-A-ATAAAAATATACAAATCAACTCCAGAAAGATTAAAAGGTTTTTCATGCTTCTA
65 AC-AATACTCAGA-AAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCTTCTA
* * * *
29715 ATATCGTTTTTCC-TTTTTTTATC-AATTAATTTGTAATTAAATGGAAACAAGATTTAGATGCTC
128 ATATCGTTTTTCCATTTTTTT-CCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTC
* *
29778 GTAAAAACAAAACCTTAAACCCAATGTGGTTGAGATTTGATTAGATGAATAT-GAATATTTCAAG
192 GTAAAAACAAAACCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAG-ATATTTCAAG
* * * * **
29842 GAGTCTTTGTGCCGAAAATCATGCAAAATTAAG-CTGGGCTCCCGAACACGTTTTTAACTTAAAA
256 GAGTCTTTGTGCCCAAAATCATGCAAAACTAAGTC-GGGCTCCAGAACGCGTTTTTAACCAAAAA
* * * * *
29906 CCGTAATGGTTAGTAAATGATTTCGGCTAAAAATTGACCCGAAAAGTTTTTTTTTCAATTGTTTG
320 CCGTGATGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTCTCAATTGTTTG
* * * * *
29971 TCATAATACTCAGCAAAAAAAATTATAATTCAATGTCAAAAAGATTGAAGGGATTTTCATGTTTC
385 TCATAATACTCAG-AAAAAATA-TATAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGCTTC
30036 TAAATATCGTTTTCCCATTTTTTTACGAATTAATTATTAATTAAATCGAAACAAGATTCAGATGC
448 TAAATATCGTTTTCCCATTTTTTTACGAATTAATT-TTAATTAAATCGAAACAAGATTCAGATGC
* * *
30101 T-TTAAAAACAAATCCATATATCCAATGTGGCTGAGATTTGGTTCCATGAATATAGATATTTCAA
512 TCGTAAAAACAAATCCATATATCCAATGTGGTTGAGATTTGGTTCGATGAATATAGATATTTCAA
* * * * *
30165 GGAGCCTTTGCGCCCAACATCAAGCAAAACAGAGCCTGCTCTGGAACGCGTTTTTAGCTAAAAAA
577 GGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGCTCCGGAACGCGTTTTTAGC-AAAAAA
30230 ACGTGAAT
641 ACGTG-AT
* *
30238 GTACACAATTTAGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCA
1 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCA
** * * * *
30303 CAACCCTCAGAAAAAATATATAGTTCATCGCCAAAAAGATTAAATGGTTTTTCAAG-TATCTAAT
66 CAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCT-TCTAAT
* * * * *
30367 ATCGTTTTTCCATTTTTTTTCCAAATTAATTCCCAGTTAAATCAAAACAATATTCAGATGCTCGT
130 ATCGTTTTTCCA-TTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
* * * *
30432 AAAAACAAATCCTTAAATCCAATATGGCTGAGATTT-AGTTAGATGAATATTGATATTTCAAAGA
194 AAAAACAAAACCTTAAATCCAATGTGGCTGAGATTTGA-TTAGATGAATATAGATATTTCAAGGA
** * * * * * * *
30496 GTCTTTGCACCCAAAATAATGCAAAACTGAGCCAAGGGC-CCAGAACGCCTTTGTAGCCAAAAAT
258 GTCTTTGTGCCCAAAATCATGCAAAACTAAGTC--GGGCTCCAGAACGCGTTTTTAACCAAAAAC
* * * * *
30560 CGTGATGGTTAGTACACGATTTCGGATAAAAACTGA--C-AAAAATAGTTTTTCTCAATTTTTTG
321 CGTGATGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAAAGT-TTTTTTCTCAATTGTTTG
* * * *
30622 -CAACAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGACGAGATTTTCACGCTTCT
385 TC-ATAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGCTTCT
* * * *
30686 AAATATCGATTTCCCA-TTTTTTACGAAATAATTTCTAATGAAATCGAAACAAGATTCAAATGCT
449 AAATATCGTTTTCCCATTTTTTTACGAATTAATTT-TAATTAAATCGAAACAAGATTCAGATGCT
* *
30750 CGTAAAAACAAATCCATATATCCAATGTAG-CGCAGATTTGGTTCGATGAATATAGATATTTCAA
513 CGTAAAAACAAATCCATATATCCAATGTGGTTG-AGATTTGGTTCGATGAATATAGATATTTCAA
* * * *
30814 GAAGTCTTTGCGCAC-AAATCATGCAAAACTGA----G-T-CTG-A--C-----T--C-------
577 GGAGTCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGCTCCGGAACGCGTTTTTAGCAAAAAAA
30855 C--G--
642 CGTGAT
* *
30857 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTA
1 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCA
* * *
30922 CAATACACAGAAAAAATTTATAATTCAACGCC-AAAAGATTAAAGGGTTTTTCATGCTTCTAATA
66 CAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCTTCTAATA
* * * ** *
30986 TTGTTTTACCATTTTTTTCCAAATTTATTTCTAATTAAATCGAAACAAGATTCAGATTTTCTTAA
131 TCGTTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAA
* * *
31051 AAACAAAACCTTAAATCCAATGTGGCTGAGAATTGATTGGATGATTATAGATATTTCAAGGAGTC
196 AAACAAAACCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTC
* * * *
31116 TTTATG-CCAATAACCATGCAAAAC-AGAGTCGAGAC-CC-GAAACGCGTTTTTAGTA-AAAAAA
261 TTTGTGCCCAA-AATCATGCAAAACTA-AGTCG-GGCTCCAG-AACGCGTTTTTA--ACCAAAAA
* * * *
31176 CCATGAAGGTTAGTATACGATTTGGGCT-AAAACTGTA-CCGAAAA-TTTTTATCTCAA-----T
320 CCGTGATGGTTAGTATACGATTTCGGCTAAAAACTG-ACCCGAAAAGTTTTTTTCTCAATTGTTT
* *
31233 -TC-T--T--T--GAAAAACTATATAATCCAATGCCAAAAA-ATTTGAAGGGGTTTTCACGCTTC
384 GTCATAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGA-TTGAAGGGGTTTTCACGCTTC
* * *
31289 T-AATATCGTTTTTCCATTTTTTT-CGAATTTATTTTTAATTAAATTGAAACAAGATTCAGATGC
448 TAAATATCGTTTTCCCATTTTTTTACGAA-TTAATTTTAATTAAATCGAAACAAGATTCAGATGC
* * * * *
31352 TCGTAAAAACAAATCTATAAATGCAATGTGGTTGAGATTTGGCTAGATGAATATAGATATTTCAA
512 TCGTAAAAACAAATCCATATATCCAATGTGGTTGAGATTTGGTTCGATGAATATAGATATTTCAA
* * * * * * * * *
31417 GGACTCTTT-CTGCCAAAAATCATGCAAAACTGAATCGGGGCCCCGAAACGTGTTTTTAGCCAAA
577 GGAGTCTTTGC-GCCCAAAATCATGCAAAACAG-AGC-CGGCTCCGGAACGCGTTTTTAGCAAAA
* *
31481 AACCGTGAC
639 AAACGTGAT
*
31490 GTACACGATTTCGGC--------T--AAAAACTGACCCGAAAAGTTC-TCTCTCAATTTTTTGCC
1 GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTC-CTCAATTTTTTGCC
* * * * * * *
31544 ACAATACTTAAAAAAAATATACAAATCAACTCCAGAAATATTAAAAGGTTTTTCATGCTTCTAAT
65 ACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCTTCTAAT
** * * * * * *
31609 ATCGTTTTTCGTTTTTTTTTACGAATTAATTTGTAATTAAATGGAAACAAAAATTTAGATGCTCG
130 ATCGTTTTTC-CATTTTTTTCCAAATTAATTTCTAATTAAATCGAAAC-AAGATTCAGATGCTCG
*
31674 TAAAAACAAAACCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGA
193 TAAAAACAAAACCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGA
* *
31739 GTCTTTGTGCCCAAAATCATGCAAAACTAAGTCGGACTCCAGAACACGTTTTTAA-CATAAAACC
258 GTCTTTGTGCCCAAAATCATGCAAAACTAAGTCGGGCTCCAGAACGCGTTTTTAACCA-AAAACC
* * * * * *
31803 GTGATGGTTAGTACATGATTTCGGCTAAAAACTGACCTGAAATGTTTTTTTTTCAATTGTTTGCC
322 GTGATGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTCTCAATTGTTTGTC
* * * *
31868 ATAATACTCAGAAAAAATTTATAATTCAATGTCAAAAAGATTGAAGGGGTTTTCACGTTTCAAAA
387 ATAATACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGCTTCTAAA
* * * *
31933 TATCATTTTCCCATTTTTTTACCAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCT-TT
452 TATCGTTTTCCCATTTTTTTACGAATTAATTT-TAATTAAATCGAAACAAGATTCAGATGCTCGT
* * * *
31997 AAAAACAAATCCATATATTCAATGTGGTTGAGATTTGGTTCCATGAATATAAATATTTGAAGGAG
516 AAAAACAAATCCATATATCCAATGTGGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAG
* * * *
32062 TCTTTGCGCCCAACATCAAGCAAATCAGAGCCTGCTCCGGAACGCGTTTTTAGCAAAAAAAAAAA
581 TCTTTGCGCCCAAAATCATGCAAAACAGAGCCGGCTCCGGAACGCGTTTTTAGC----AAAAAAA
*
32127 TGTGAT
642 CGTGAT
* * * *
32133 GGTACACAATTTGGGCTAAAATTTTGTAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGTC
1 -GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCC
* * *
32198 ACAATGCTCAGAAAAAATATATAATTCAACACCAAAAAGATTAAAAGGTTTTTCAAG-TATCTAA
65 ACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCT-TCTAA
* * *
32262 TATCGTTTTTCCATATTTTTCCAAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCACGT
129 TATCGTTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
* * *
32327 AAAAACAAATA-CTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATATTGATATTTCAAGGA
194 AAAAACAAA-ACCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGA
* * * * * * * * * * *
32391 GTCTTTGCGCCCAAAATAATGCGAAACTGAGCCAGGCTTCAGAACGCCTTTGTAGCCAAAAACCA
258 GTCTTTGTGCCCAAAATCATGCAAAACTAAGTCGGGCTCCAGAACGCGTTTTTAACCAAAAACCG
* * *
32456 TGATGGTTAGTATATGATTTCGGATAAAAACTGACCTGAAAAGTT
323 TGATGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAAAGTT
32501 ATATATATAT
Statistics
Matches: 2393, Mismatches: 366, Indels: 283
0.79 0.12 0.09
Matches are distributed among these distances:
602 1 0.00
603 108 0.05
604 73 0.03
605 1 0.00
606 1 0.00
608 1 0.00
610 1 0.00
612 3 0.00
613 1 0.00
615 2 0.00
616 25 0.01
617 155 0.06
618 40 0.02
619 92 0.04
620 1 0.00
622 4 0.00
623 58 0.02
624 39 0.02
625 62 0.03
626 122 0.05
627 16 0.01
629 1 0.00
631 1 0.00
632 2 0.00
633 16 0.01
634 2 0.00
636 1 0.00
637 45 0.02
638 156 0.07
639 138 0.06
640 79 0.03
641 163 0.07
642 85 0.04
643 17 0.01
644 74 0.03
647 2 0.00
648 58 0.02
649 176 0.07
650 69 0.03
651 29 0.01
652 287 0.12
653 83 0.03
654 101 0.04
655 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (647 bp):
GTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAAGTTCTTCCTCAATTTTTTGCCA
CAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAAAAGGTTTTTCATGCTTCTAATA
TCGTTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAA
AAACAAAACCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTC
TTTGTGCCCAAAATCATGCAAAACTAAGTCGGGCTCCAGAACGCGTTTTTAACCAAAAACCGTGA
TGGTTAGTATACGATTTCGGCTAAAAACTGACCCGAAAAGTTTTTTTCTCAATTGTTTGTCATAA
TACTCAGAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGGTTTTCACGCTTCTAAATATC
GTTTTCCCATTTTTTTACGAATTAATTTTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
CAAATCCATATATCCAATGTGGTTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
GCGCCCAAAATCATGCAAAACAGAGCCGGCTCCGGAACGCGTTTTTAGCAAAAAAACGTGAT
Found at i:36252 original size:20 final size:20
Alignment explanation
Indices: 36227--36266 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36217 GAGCAAACTG
36227 TACATACTAATCAATTTTGT
1 TACATACTAATCAATTTTGT
36247 TACATACTAATCAATTTTGT
1 TACATACTAATCAATTTTGT
36267 GGGTCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (20 bp):
TACATACTAATCAATTTTGT
Done.