Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016478.1 Corchorus olitorius cultivar O-4 contig16511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63560

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1713--1781
36
1.9
36
96
0
129
23
8
7
60
1.51
2555--2638
45
1.9
43
85
4
114
38
3
7
51
1.47
3369--3393
12
2.1
12
100
0
50
36
8
32
24
1.84
20722--20761
19
2.1
19
85
0
53
37
2
12
47
1.55
21103--21154
25
2.1
24
82
13
61
53
1
3
40
1.30
22222--22264
21
2.0
21
90
0
68
0
32
16
51
1.45
25240--25298
31
1.9
31
89
0
91
25
16
8
49
1.74
26392--26429
12
3.2
12
92
0
67
52
0
0
47
1.00
26377--26424
14
3.5
15
81
13
59
54
0
2
43
1.12
26366--26422
16
3.6
16
81
13
73
56
0
3
40
1.17
27950--27986
15
2.5
15
90
0
56
16
35
29
18
1.93
29790--29869
36
2.2
36
86
4
117
47
7
38
6
1.57
32254--32416
60
2.7
58
77
9
175
36
15
19
28
1.93
32462--32620
60
2.7
60
87
2
212
30
15
15
38
1.89
32523--32624
31
3.4
31
67
15
95
31
16
15
36
1.91
44738--44767
2
15.0
2
100
0
60
0
0
50
50
1.00
45586--45667
41
2.0
41
100
0
164
26
12
24
36
1.91
49573--49600
13
2.2
13
100
0
56
25
17
14
42
1.87
52647--52696
24
2.1
24
88
7
75
16
38
20
26
1.92

Tables:   1

The End!