Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016481.1 Corchorus olitorius cultivar O-4 contig16514, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23470

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8584--8639
2
28.0
2
100
0
112
0
50
0
50
1.00
10495--10531
19
1.9
19
88
0
56
37
16
13
32
1.87
10508--10656
76
2.0
76
97
0
280
34
16
18
30
1.93
10632--10769
68
2.0
68
97
0
258
39
18
18
23
1.92
11894--11943
5
10.4
5
89
8
68
26
20
0
54
1.45
11904--11947
13
3.2
13
93
6
70
22
20
0
56
1.42
12674--13410
381
1.9
383
82
2
928
36
13
15
34
1.87
13042--14448
339
4.3
323
82
7
1549
32
14
17
35
1.90
13199--14448
644
1.9
649
84
6
1652
31
14
18
35
1.91
14719--19183
323
13.9
321
83
5
5378
32
14
17
35
1.90
19836--20280
234
1.9
233
83
4
583
33
13
15
37
1.86
20070--22910
322
8.9
321
83
5
3374
33
14
16
35
1.89
20064--22908
641
4.4
639
84
4
3413
33
14
16
35
1.89
20070--22906
962
3.0
955
86
4
3769
33
14
16
35
1.89
23030--23164
68
2.0
68
97
0
252
20
27
30
22
1.98

Tables:   1

The End!