Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016483.1 Corchorus olitorius cultivar O-4 contig16516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97752

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
164--211
25
2.0
24
87
4
69
31
6
4
58
1.42
3188--3212
2
12.5
2
100
0
50
52
0
0
48
1.00
4241--4268
2
14.0
2
100
0
56
50
0
0
50
1.00
17184--17494
162
1.9
162
98
0
604
40
15
17
27
1.89
47213--47239
6
4.5
6
100
0
54
85
0
14
0
0.61
47594--47639
23
2.0
24
95
4
85
30
4
8
56
1.49
47594--47645
23
2.4
21
87
12
70
28
5
7
57
1.50
47896--47943
24
2.0
24
100
0
96
58
0
16
25
1.38
51317--51377
29
2.1
29
100
0
122
36
31
16
16
1.91
53069--53239
93
1.8
92
93
1
297
29
28
12
29
1.93
53299--53332
16
2.1
16
100
0
68
23
14
17
44
1.86
53431--53518
39
2.5
33
83
16
108
37
32
11
18
1.86
64257--64288
3
10.7
3
100
0
64
34
31
34
0
1.58
64310--64335
6
4.3
6
100
0
52
69
0
15
15
1.20
66642--66833
96
2.0
96
100
0
384
23
18
15
41
1.89
67082--67153
34
2.0
37
89
7
114
25
20
26
27
1.99
69419--69607
98
1.9
98
94
0
333
34
14
16
33
1.90
76256--76280
13
1.9
13
100
0
50
52
8
16
24
1.70
77078--77128
26
2.0
26
92
0
84
33
23
1
41
1.66
77293--77352
30
2.0
30
96
0
111
48
16
13
21
1.80
79733--79871
66
2.1
67
95
1
253
32
10
12
45
1.75
80293--80318
7
3.7
7
100
0
52
0
11
0
88
0.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91726--91762
5
7.6
5
90
6
58
83
0
16
0
0.64
93098--93130
17
1.9
17
93
0
57
0
18
0
81
0.68
93096--93152
23
2.5
22
81
10
62
0
21
0
78
0.74
94871--94951
23
3.5
24
75
17
66
50
1
3
44
1.27
94867--94926
21
3.0
21
81
15
74
50
0
6
43
1.28
94889--94951
21
3.0
19
84
11
63
52
1
3
42
1.27
94919--94951
10
3.0
11
86
13
50
54
3
0
42
1.15

Tables:   1

The End!