Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016484.1 Corchorus olitorius cultivar O-4 contig16517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83944

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5956--6113
78
2.0
78
97
0
298
26
12
26
34
1.92
6461--6809
182
1.9
182
95
1
628
23
16
20
39
1.92
24695--24720
2
13.0
2
100
0
52
0
0
50
50
1.00
28283--28338
28
2.0
29
89
3
87
23
12
5
58
1.54
33335--33361
1
27.0
1
100
0
54
100
0
0
0
0.00
42075--42139
21
3.2
20
73
20
55
53
9
7
29
1.60
44510--44575
31
2.1
32
88
8
100
25
30
10
33
1.90
53383--53420
18
2.1
18
95
0
67
44
15
0
39
1.47
54086--54145
29
2.0
30
83
3
77
45
5
0
50
1.23
59377--63819
323
13.7
324
78
9
3930
32
14
17
35
1.90
59376--63977
650
7.1
645
79
8
4190
32
14
17
35
1.90
63850--64120
143
1.9
143
89
1
427
28
18
17
36
1.93
65291--65318
13
2.2
13
100
0
56
64
7
0
28
1.20
67752--67812
32
1.9
32
93
0
104
47
6
19
26
1.74
68355--68431
40
1.9
40
91
0
127
38
20
10
29
1.86
69326--69350
7
3.6
7
100
0
50
44
0
12
44
1.41
74706--74783
30
2.5
31
95
4
149
24
8
10
56
1.61
75059--75085
12
2.2
12
100
0
54
33
0
18
48
1.49
76428--76514
29
2.9
29
77
3
84
45
13
19
20
1.84
81876--83942
322
6.5
319
84
5
2400
33
13
17
35
1.88
82070--83943
321
5.9
319
85
5
2416
33
13
17
35
1.89

Tables:   1

The End!